CmoCh02G017810 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G017810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Adaptin ear-binding coat-associated protein, putative
Location	Cmo_Chr02: 10150335 .. 10152595 (-)
RNA-Seq Expression	CmoCh02G017810
Synteny	CmoCh02G017810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTTCTTTCTTTCCTTCTTTCGTTCTGATGTCTTCTGCTCACCTTGATAGTTAATTCCTCAATAAATTCAATTCCTTTGGCTTTGGGGATCCCATTTTCCCCAATTCCATCTCTGTAAATCCTCAAGCTTTCTTCTCAATCGATCTCACATTCTCACAATTTCACGATGTCGTTTGAGGAGGACGAGGAGACCTTCGAGCACACTCTCCTTGTCGTTCGCGAGGTATCCGTTTACAAAATCCCTCCTCGAACCACATCCGGCGGCTACAAGTGCGGCGAGTGGCTCCAATCCGATAAGATCTGGTCCGGCCGCCTGAGGGTTGTGTCCTGTAAGGACCGATGTGAGATCCGGTTGGAAGATCCCAACTCCGGTGAACTCTTTGCTGCTTGTTTTATTAATCCTGGTCAGCGGGACAACTCCGTCGAGACCGTTCTTGACTCTTCTCGATACTTCGTTTTGAAGATCGAGGATGGACGGGGTAAGCACGCTTTCGTAGGGTTAGGCTTTGCCGAGCGAAATGAAGCTTTTGATTTCAATGTCGCATTGTCCGACCATGAGAAGTACGTCAGGAGGGATCATGAGAAGGATCCCAGTACTGGCAGCGATGTCAATGAAGAGAGCCAAATTGATATTCATCCTGCTGTCAATCACAGACTGAAGGTATTGCCCTAATTTTGTTTTTCATCAGCGACTGAAGTTGATTAATTTGGTGTTACAGTCGTTTGAAGTGATTTTATGGACATTTGATGATGTGCTTACGTGAAATGTGATGACTGTGAACTGATCTGATAAATGAAATCTCTGATCTAAGTATTAGGCAAATAAATGGTTCACATTGAATAGAATAGATTTGCTCATGGCAGGCTTAGTCTCTTGGGTAGTGGTGGTGTTAGTTTATAAGAAAGTTACTCTGCGCTTTATTCGTATGCCTTCATTATGTCCCAGGTCTTCAATGTTATCGAGTTTTCAAAATCAGAACGCTTTATATTGTCATTGTGATCTTGTGTTTCTTTATGATGGGCTGGTTGATAGGAAGGTGAAACAATTCGAATCAATGTGAAGCACAAACCATCGGGTGGAACTGGTATGCTATCAGCTGCTGGCATGTCAGGGTTTGGTACTGGAAAGCCAAAAGCATTGAGTCTTGCTCCACCACCAACTGGAGCTGTGAAAATCAGGTCTCCTCTTCCACCCCCTCCAAATGACCCTGCTGCTCGAAAGCTATCTGCCAGCGCATGCCGCGATGTTGGTCACGAGGGAAAAAAGGACAATGTAAGGCATGCAGCCGATCCATTATCAGATCTTTCCCAACTTGAGGTACAGTTTCTGCTGTTAGTTGTTTCTTTCCTTATACCTTTGATACAGAGAATAATGGTATTCTTAAGTGACTATAAATTGCCCCTTTAGCTTACGTATTATGGTTCATCTGTGTCCTTTATGCGCAACCCACTTAAATCTATATTAGTTTTAGGAAACACAATTACTAAGTTTGATTAGACTCAAATATTGGTTTCTCTCCTTTGTGATTGGAGATGACAACTACTCTTAGACGCTACTGTTGAAGCTTGCCCTTTTATTTGCCATGTCAACTTGAAGAATAGTGCCGGGTGTAATGAATATATTGAGTTATTTCTAATGCTTAAGCAACAGGCTTATGTTTTTTCTATTTTTTGAAGATGGATCTGACTGATCCCTGTTCTTTAGGTTATCTTATAACATCGGTAGCTCATGTAGCATGAGTGTATGACTCCTTAGTTACTCATGTCAATTATAAACGAGTCTAGAACAATTTTTAACTCTTGTTTCATCACGGTTGCAGAAAAATCTTCCTTCTGCTCCAGGTTCAACAAAGGCAGCAGCATCAGGATGGGCAGCATTCTGATCAATGTAAGCTGGTGTTTGATATCAAAAGATCTTAGTTTGATGTTTTTTCTGGAGGTTTCGTAATCTTCATTTTTTGTTCATCTTGAGGGTGAAAGGGGAAGAAAAAGGTGAAAGGGGAGTTATAAGTGATAATACCATATACCATCTTTTGGAAAATAATCTTGGAATATATATGTATACTTCTCCAGTTATTTTCCCTACCTAATGGAGATATTTATCTCGAGTTGTCTCTGTATCCCATTTCAATCCATTGCCTTCGATTTCTGTTTCTAATTGAATTGATTCCATTTTGTAATTCTACTTATAACTATGTCCTTGCGAATTTTCATGTGTCGTGTACATAATAAAGGTGATAGGCCTCACTGAGCCAGTG

mRNA sequence

TTTCTTTCTTTCTTTCCTTCTTTCGTTCTGATGTCTTCTGCTCACCTTGATAGTTAATTCCTCAATAAATTCAATTCCTTTGGCTTTGGGGATCCCATTTTCCCCAATTCCATCTCTGTAAATCCTCAAGCTTTCTTCTCAATCGATCTCACATTCTCACAATTTCACGATGTCGTTTGAGGAGGACGAGGAGACCTTCGAGCACACTCTCCTTGTCGTTCGCGAGGTATCCGTTTACAAAATCCCTCCTCGAACCACATCCGGCGGCTACAAGTGCGGCGAGTGGCTCCAATCCGATAAGATCTGGTCCGGCCGCCTGAGGGTTGTGTCCTGTAAGGACCGATGTGAGATCCGGTTGGAAGATCCCAACTCCGGTGAACTCTTTGCTGCTTGTTTTATTAATCCTGGTCAGCGGGACAACTCCGTCGAGACCGTTCTTGACTCTTCTCGATACTTCGTTTTGAAGATCGAGGATGGACGGGGTAAGCACGCTTTCGTAGGGTTAGGCTTTGCCGAGCGAAATGAAGCTTTTGATTTCAATGTCGCATTGTCCGACCATGAGAAGTACGTCAGGAGGGATCATGAGAAGGATCCCAGTACTGGCAGCGATGTCAATGAAGAGAGCCAAATTGATATTCATCCTGCTGTCAATCACAGACTGAAGCGACTGAAGTTGATTAATTTGGTGTTACAGTCGTTTGAAGTGATTTTATGGACATTTGATGATGCAAATAAATGGTTCACATTGAATAGAATAGATTTGCTCATGGCAGGCTTAGTCTCTTGGGTAGTGGTGGTGTTAGTTTATAAGAAAGTTACTCTGCGCTTTATTCGTATGCCTTCATTATGTCCCAGGTCTTCAATGTTATCGAGTTTTCAAAATCAGAACGCTTTATATTGTCATTGTGATCTTGTGTTTCTTTATGATGGGCTGGAAGGTGAAACAATTCGAATCAATGTGAAGCACAAACCATCGGGTGGAACTGGTATGCTATCAGCTGCTGGCATGTCAGGGTTTGGTACTGGAAAGCCAAAAGCATTGAGTCTTGCTCCACCACCAACTGGAGCTGTGAAAATCAGGTCTCCTCTTCCACCCCCTCCAAATGACCCTGCTGCTCGAAAGCTATCTGCCAGCGCATGCCGCGATGTTGGTCACGAGGGAAAAAAGGACAATGTAAGGCATGCAGCCGATCCATTATCAGATCTTTCCCAACTTGAGATGGATCTGACTGATCCCTGTTCTTTAGAAAAATCTTCCTTCTGCTCCAGGTTCAACAAAGGCAGCAGCATCAGGATGGGCAGCATTCTGATCAATGTAAGCTGGTGTTTGATATCAAAAGATCTTAGTTTGATGTTTTTTCTGGAGGTTTCGTAATCTTCATTTTTTGTTCATCTTGAGGGTGAAAGGGGAAGAAAAAGGTGAAAGGGGAGTTATAAGTGATAATACCATATACCATCTTTTGGAAAATAATCTTGGAATATATATGTATACTTCTCCAGTTATTTTCCCTACCTAATGGAGATATTTATCTCGAGTTGTCTCTGTATCCCATTTCAATCCATTGCCTTCGATTTCTGTTTCTAATTGAATTGATTCCATTTTGTAATTCTACTTATAACTATGTCCTTGCGAATTTTCATGTGTCGTGTACATAATAAAGGTGATAGGCCTCACTGAGCCAGTG

Coding sequence (CDS)

ATGTCGTTTGAGGAGGACGAGGAGACCTTCGAGCACACTCTCCTTGTCGTTCGCGAGGTATCCGTTTACAAAATCCCTCCTCGAACCACATCCGGCGGCTACAAGTGCGGCGAGTGGCTCCAATCCGATAAGATCTGGTCCGGCCGCCTGAGGGTTGTGTCCTGTAAGGACCGATGTGAGATCCGGTTGGAAGATCCCAACTCCGGTGAACTCTTTGCTGCTTGTTTTATTAATCCTGGTCAGCGGGACAACTCCGTCGAGACCGTTCTTGACTCTTCTCGATACTTCGTTTTGAAGATCGAGGATGGACGGGGTAAGCACGCTTTCGTAGGGTTAGGCTTTGCCGAGCGAAATGAAGCTTTTGATTTCAATGTCGCATTGTCCGACCATGAGAAGTACGTCAGGAGGGATCATGAGAAGGATCCCAGTACTGGCAGCGATGTCAATGAAGAGAGCCAAATTGATATTCATCCTGCTGTCAATCACAGACTGAAGCGACTGAAGTTGATTAATTTGGTGTTACAGTCGTTTGAAGTGATTTTATGGACATTTGATGATGCAAATAAATGGTTCACATTGAATAGAATAGATTTGCTCATGGCAGGCTTAGTCTCTTGGGTAGTGGTGGTGTTAGTTTATAAGAAAGTTACTCTGCGCTTTATTCGTATGCCTTCATTATGTCCCAGGTCTTCAATGTTATCGAGTTTTCAAAATCAGAACGCTTTATATTGTCATTGTGATCTTGTGTTTCTTTATGATGGGCTGGAAGGTGAAACAATTCGAATCAATGTGAAGCACAAACCATCGGGTGGAACTGGTATGCTATCAGCTGCTGGCATGTCAGGGTTTGGTACTGGAAAGCCAAAAGCATTGAGTCTTGCTCCACCACCAACTGGAGCTGTGAAAATCAGGTCTCCTCTTCCACCCCCTCCAAATGACCCTGCTGCTCGAAAGCTATCTGCCAGCGCATGCCGCGATGTTGGTCACGAGGGAAAAAAGGACAATGTAAGGCATGCAGCCGATCCATTATCAGATCTTTCCCAACTTGAGATGGATCTGACTGATCCCTGTTCTTTAGAAAAATCTTCCTTCTGCTCCAGGTTCAACAAAGGCAGCAGCATCAGGATGGGCAGCATTCTGATCAATGTAAGCTGGTGTTTGATATCAAAAGATCTTAGTTTGATGTTTTTTCTGGAGGTTTCGTAA

Protein sequence

MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEAFDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFEVILWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQNQNALYCHCDLVFLYDGLEGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDLTDPCSLEKSSFCSRFNKGSSIRMGSILINVSWCLISKDLSLMFFLEVS

Homology

[Close]

BLAST of CmoCh02G017810 vs. ExPASy Swiss-Prot
Match: Q681Q7 (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 PE=1 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 3.7e-91
Identity = 196/356 (55.06%), Postives = 224/356 (62.92%), Query Frame = 0


Query: 1   MSF--EEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR 60
           MSF  EE+EETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR
Sbjct: 1   MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR 60

Query: 61  CEIRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERN 120
           CEIRLED NSG+LFAACF++PG+R+NSVE  LDSSRYFVL+I+DGRGK+AF+GLGFAERN
Sbjct: 61  CEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERN 120

Query: 121 EAFDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFE 180
           EAFDFNVALSDHEKYVRR+ EK+  TG     ++ IDIHPAVNHRLK             
Sbjct: 121 EAFDFNVALSDHEKYVRREKEKE--TGETSESDNHIDIHPAVNHRLK------------- 180

Query: 181 VILWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 QNALYCHCDLVFLYDGLEGETIRINVKHKP-SGGTGMLSAAGMSGFGTGKPKALSLAPPP 300
                            EGETIRINVK KP + GTGMLSAA +S  GTGKPK L+LAPPP
Sbjct: 241 -----------------EGETIRINVKPKPTTNGTGMLSAA-LS--GTGKPKPLALAPPP 251

Query: 301 TGAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDL 354
             A   RSPLPPPPNDP A ++++  C+    E +++      +PLSDLSQL+ +L
Sbjct: 301 KAAGVTRSPLPPPPNDPVASRIASDGCK----ESRRN------EPLSDLSQLKKNL 251

[Close]

BLAST of CmoCh02G017810 vs. ExPASy Swiss-Prot
Match: Q9D1J1 (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus OX=10090 GN=Necap2 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.1e-32
Identity = 70/136 (51.47%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  EV VY+IPPR T+ GY+  EW      WSGRLR+ +      I+LED
Sbjct: 2   EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query: 66  PNSGELFAACFIN--PGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEAFDF 125
             SGELFA   ++  PG    +VE+V DSSRYFV++IEDG G+ AF+GLGF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHE 140
           NVAL DH K+V++  E
Sbjct: 122 NVALQDHFKWVKQQCE 134

[Close]

BLAST of CmoCh02G017810 vs. ExPASy Swiss-Prot
Match: Q6P756 (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Necap2 PE=1 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 8.7e-32
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  EV VY+IPPR T+ GY+  EW      WSGRLR+ +      I+LED
Sbjct: 2   EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61

Query: 66  PNSGELFAACFIN--PGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEAFDF 125
             SGELFA   ++  PG    +VE+V DSSRYFV++IEDG G+ AF+G+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHE 140
           NVAL DH K+V++  E
Sbjct: 122 NVALQDHFKWVKQQCE 134

[Close]

BLAST of CmoCh02G017810 vs. ExPASy Swiss-Prot
Match: Q9NVZ3 (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens OX=9606 GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-31
Identity = 68/136 (50.00%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  +V VY+IPPR T+ GY+  EW      WSGRLR+ +      I+LED
Sbjct: 2   EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61

Query: 66  PNSGELFAACFIN--PGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEAFDF 125
             SGELFA   ++  PG    +VE+V DSSRYFV++IEDG G+ AF+G+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHE 140
           NVAL DH K+V++  E
Sbjct: 122 NVALQDHFKWVKQQCE 134

[Close]

BLAST of CmoCh02G017810 vs. ExPASy Swiss-Prot
Match: Q5E9Q4 (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus OX=9913 GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.9e-31
Identity = 68/136 (50.00%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 6   DEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLED 65
           +E  +E  L V  +V VY+IPPR T+ GY+  EW      WSGRLR+ +      I+LED
Sbjct: 2   EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLED 61

Query: 66  PNSGELFAACFIN--PGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEAFDF 125
             SGELFA   ++  PG    +VE+V DSSRYFV++IEDG G+ AF+G+GF +R +AFDF
Sbjct: 62  RTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 121

Query: 126 NVALSDHEKYVRRDHE 140
           NVAL DH K+V++  E
Sbjct: 122 NVALQDHFKWVKQQCE 134

[Close]

BLAST of CmoCh02G017810 vs. ExPASy TrEMBL
Match: A0A6J1EXN4 (uncharacterized protein At1g03900-like OS=Cucurbita moschata OX=3662 GN=LOC111437427 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 1.1e-135
Identity = 261/353 (73.94%), Postives = 262/353 (74.22%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFEVI 180
           FDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLK               
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLK--------------- 180

Query: 181 LWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQNQN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 ALYCHCDLVFLYDGLEGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA 300
                          EGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA
Sbjct: 241 ---------------EGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA 263

Query: 301 VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDL 354
           VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLE +L
Sbjct: 301 VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEKNL 263

[Close]

BLAST of CmoCh02G017810 vs. ExPASy TrEMBL
Match: A0A6J1K5Y6 (uncharacterized protein At1g03900-like OS=Cucurbita maxima OX=3661 GN=LOC111491465 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 9.7e-135
Identity = 259/353 (73.37%), Postives = 261/353 (73.94%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDG+GKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFEVI 180
           FDFNVALSDHEKYVRRDHEKDPSTGSD NEESQIDIHPAVNHRLK               
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPSTGSDANEESQIDIHPAVNHRLK--------------- 180

Query: 181 LWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQNQN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 ALYCHCDLVFLYDGLEGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA 300
                          EGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA
Sbjct: 241 ---------------EGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA 263

Query: 301 VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDL 354
           VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLE +L
Sbjct: 301 VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEKNL 263

[Close]

BLAST of CmoCh02G017810 vs. ExPASy TrEMBL
Match: A0A6J1DPS7 (uncharacterized protein At1g03900 OS=Momordica charantia OX=3673 GN=LOC111022692 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 1.3e-123
Identity = 245/364 (67.31%), Postives = 253/364 (69.51%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA 120
           IRLEDPNSG+LFAACF+NPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGDLFAACFVNPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPS-TGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFEV 180
           FDFNVALSDHEKY RRD EKD S  G+D+NEES IDIHPAVNHRLK              
Sbjct: 121 FDFNVALSDHEKYARRDQEKDTSGGGADINEESHIDIHPAVNHRLK-------------- 180

Query: 181 ILWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQNQ 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 NALYCHCDLVFLYDGLEGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTG 300
                           EGETIRINVKHK S GTGMLSAAG+SG GTGKPK LSLAPPPTG
Sbjct: 241 ----------------EGETIRINVKHKTSSGTGMLSAAGLSGSGTGKPKTLSLAPPPTG 274

Query: 301 AVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDLTDPCSL 360
           A KIRSPLPPPPNDPAARKLSASACRDVGHE +KDNVRHA DPLSDLSQLE +L      
Sbjct: 301 AGKIRSPLPPPPNDPAARKLSASACRDVGHEVQKDNVRHATDPLSDLSQLERNLPSAPGS 274

Query: 361 EKSS 364
            K+S
Sbjct: 361 AKTS 274

[Close]

BLAST of CmoCh02G017810 vs. ExPASy TrEMBL
Match: A0A6J1HUU0 (uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467022 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 1.1e-122
Identity = 239/353 (67.71%), Postives = 249/353 (70.54%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGG KCGEWLQSDKIWSGRLRV SCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVASCKDRCE 60

Query: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACF+NPGQR+NSVE VLDSSRYFVLKIEDG+GKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFEVI 180
           FDFNVALSDHEKYVRRDHEKDP+ G +VNEES IDIHPAVNHRLK               
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPTGGGNVNEESHIDIHPAVNHRLK--------------- 180

Query: 181 LWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQNQN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 ALYCHCDLVFLYDGLEGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA 300
                          EGETIRINVKHKPS GTGMLSAAG+SG GTGKPK LSLAPPPTGA
Sbjct: 241 ---------------EGETIRINVKHKPSSGTGMLSAAGLSGSGTGKPKTLSLAPPPTGA 263

Query: 301 VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDL 354
            KI SPLPPPPNDPAARKLSASACRDVG EGK+DNV +A+DPLSDLSQLE +L
Sbjct: 301 RKISSPLPPPPNDPAARKLSASACRDVGREGKRDNVSNASDPLSDLSQLERNL 263

[Close]

BLAST of CmoCh02G017810 vs. ExPASy TrEMBL
Match: A0A6J1HLP0 (uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464096 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 2.5e-122
Identity = 239/353 (67.71%), Postives = 248/353 (70.25%), Query Frame = 0


Query: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCE 60
           MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGG KCGEWLQSDKIWSGRLRVVSCKDRCE
Sbjct: 1   MSFEEDEETFEHTLLVVREVSVYKIPPRTTSGGCKCGEWLQSDKIWSGRLRVVSCKDRCE 60

Query: 61  IRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERNEA 120
           IRLEDPNSGELFAACF+NPGQR+NSVE VLDSSRYFVLKIEDG+GKHAFVGLGFAERNEA
Sbjct: 61  IRLEDPNSGELFAACFVNPGQRENSVEAVLDSSRYFVLKIEDGQGKHAFVGLGFAERNEA 120

Query: 121 FDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFEVI 180
           FDFNVALSDHEKYVRRDHEKDP+ G DVNEES IDIHPAVNHRLK               
Sbjct: 121 FDFNVALSDHEKYVRRDHEKDPTGGGDVNEESHIDIHPAVNHRLK--------------- 180

Query: 181 LWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQNQN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 ALYCHCDLVFLYDGLEGETIRINVKHKPSGGTGMLSAAGMSGFGTGKPKALSLAPPPTGA 300
                          EGETIRINVKHKPS GTGMLSAAG+SG GTGKPK LSLAPPPTGA
Sbjct: 241 ---------------EGETIRINVKHKPSSGTGMLSAAGLSGSGTGKPKTLSLAPPPTGA 263

Query: 301 VKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDL 354
            KI SPLPPPPNDPAARKLSAS CRDVG EGK+DNV  A++PLSDLSQLE +L
Sbjct: 301 RKISSPLPPPPNDPAARKLSASTCRDVGREGKRDNVSTASNPLSDLSQLERNL 263

[Close]

BLAST of CmoCh02G017810 vs. TAIR 10
Match: AT1G03900.1 (non-intrinsic ABC protein 4 )

HSP 1 Score: 336.7 bits (862), Expect = 2.6e-92
Identity = 196/356 (55.06%), Postives = 224/356 (62.92%), Query Frame = 0


Query: 1   MSF--EEDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR 60
           MSF  EE+EETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR
Sbjct: 1   MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDR 60

Query: 61  CEIRLEDPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIEDGRGKHAFVGLGFAERN 120
           CEIRLED NSG+LFAACF++PG+R+NSVE  LDSSRYFVL+I+DGRGK+AF+GLGFAERN
Sbjct: 61  CEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERN 120

Query: 121 EAFDFNVALSDHEKYVRRDHEKDPSTGSDVNEESQIDIHPAVNHRLKRLKLINLVLQSFE 180
           EAFDFNVALSDHEKYVRR+ EK+  TG     ++ IDIHPAVNHRLK             
Sbjct: 121 EAFDFNVALSDHEKYVRREKEKE--TGETSESDNHIDIHPAVNHRLK------------- 180

Query: 181 VILWTFDDANKWFTLNRIDLLMAGLVSWVVVVLVYKKVTLRFIRMPSLCPRSSMLSSFQN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 QNALYCHCDLVFLYDGLEGETIRINVKHKP-SGGTGMLSAAGMSGFGTGKPKALSLAPPP 300
                            EGETIRINVK KP + GTGMLSAA +S  GTGKPK L+LAPPP
Sbjct: 241 -----------------EGETIRINVKPKPTTNGTGMLSAA-LS--GTGKPKPLALAPPP 251

Query: 301 TGAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLSDLSQLEMDL 354
             A   RSPLPPPPNDP A ++++  C+    E +++      +PLSDLSQL+ +L
Sbjct: 301 KAAGVTRSPLPPPPNDPVASRIASDGCK----ESRRN------EPLSDLSQLKKNL 251

[Close]

BLAST of CmoCh02G017810 vs. TAIR 10
Match: AT3G58600.1 (Adaptin ear-binding coat-associated protein 1 NECAP-1 )

HSP 1 Score: 132.9 bits (333), Expect = 5.8e-31
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 5   EDEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLE 64
           E+ E  E  L  V E  VY IPPR T+  Y+  EW  +   W G L+VVS  + C I+L 
Sbjct: 27  EEREAIEIALFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLV 86

Query: 65  DPNSGELFAACFINPGQRDNSVETVLDSSRYFVLKIE---DGRGKHAFVGLGFAERNEAF 124
           D  +GEL+A  F+  G+  + VE V+DSSRYFVL++E   DGR +HAF+GLGF ER EA+
Sbjct: 87  DKTTGELYAQAFLREGEL-HPVEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAY 146

Query: 125 DFNVALSDHEKYVRR 137
           DF  AL DH KY+ +
Sbjct: 147 DFQAALHDHMKYLNK 160

The following BLAST results are available for this feature:

BLAST of CmoCh02G017810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q681Q7	3.7e-91	55.06	Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 P...	[more]
Q9D1J1	5.1e-32	51.47	Adaptin ear-binding coat-associated protein 2 OS=Mus musculus OX=10090 GN=Necap2...	[more]
Q6P756	8.7e-32	50.74	Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus OX=10116 GN=N...	[more]
Q9NVZ3	1.1e-31	50.00	Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens OX=9606 GN=NECAP2 ...	[more]
Q5E9Q4	1.9e-31	50.00	Adaptin ear-binding coat-associated protein 2 OS=Bos taurus OX=9913 GN=NECAP2 PE...	[more]

BLAST of CmoCh02G017810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXN4	1.1e-135	73.94	uncharacterized protein At1g03900-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1K5Y6	9.7e-135	73.37	uncharacterized protein At1g03900-like OS=Cucurbita maxima OX=3661 GN=LOC1114914...	[more]
A0A6J1DPS7	1.3e-123	67.31	uncharacterized protein At1g03900 OS=Momordica charantia OX=3673 GN=LOC111022692...	[more]
A0A6J1HUU0	1.1e-122	67.71	uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1HLP0	2.5e-122	67.71	uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of CmoCh02G017810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03900.1	2.6e-92	55.06	non-intrinsic ABC protein 4	[more]
AT3G58600.1	5.8e-31	48.89	Adaptin ear-binding coat-associated protein 1 NECAP-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 14..137 e-value: 2.2E-48 score: 165.2
IPR012466	NECAP, PHear domain	PFAM	PF07933	DUF1681	coord: 11..145 e-value: 2.5E-50 score: 170.2
IPR012466	NECAP, PHear domain	CDD	cd13228	PHear_NECAP	coord: 12..132 e-value: 4.54099E-74 score: 224.742
None	No IPR available	PANTHER	PTHR12847:SF13	SUBFAMILY NOT NAMED	coord: 1..172 coord: 256..354
None	No IPR available	PANTHER	PTHR12847	ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED	coord: 1..172 coord: 256..354
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 7..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G017810.1	CmoCh02G017810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006897	endocytosis
cellular_component	GO:0030125	clathrin vesicle coat
cellular_component	GO:0016020	membrane