CmoCh02G004430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	la-related protein 6C
Location	Cmo_Chr02: 2324879 .. 2328449 (+)
RNA-Seq Expression	CmoCh02G004430
Synteny	CmoCh02G004430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTAGCCACAATTTGAACGAAGATCCATTACAAAATCAAAAGGAACACAAGCGTTAACCAGAGCGAAGGGAGGAGGCGAGATTTTCGTTGGAGAAGAAGGCGAAATGGATGGCCATGGCAGAATTCCCACCTCGAAATCGTCGGTCAAATTCGAAACCAACGGCCCTTTGTCACAAAATCCTAGCGTCCTCTCGATCCAGCCCCAGATGCATATATTTGGCCGCGAAATCTGCGTCGATTTACAGATTTCTGTTACTAAACTTCAGGCCAAATCTTACACCCACACACACACAGAAAGAGATTGAGATTTCAATAACCCATATGCGTTTCAAACCCTACTTCGATTAATCGCAAGCAAAAAGGAAGAAAATGGCGGAAGCGAATTCGGAAGAGAAGGTGAATGAGAATCCTGAAATGGATGTCAAAGAAGCTGTGAATGGCGATGGTGTTGGTAGTAGTAATAGCAATGGTAATCTTTCCTTCAAATTTAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCCTATTTTCATTTTCTTGGTGGGGCTCCTGCTACTTCAGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCTCTCCCAAATTTCTCTAAGAACGCCCGTTCGGAGGATATTCAGCAAAAAATCGTCAAACAGGTGTCCTGTTTTATTCTGTTCTTGATTCCTTTTTTATCTCTGTTTCTCTTATATTTCATCGCGTTGGATTCCATTATCTTGATTCCTGTGCTGTGACCGTCTGAATGATTAATCATCAACTCTGCTTTTCCCGTTCATTGAAGGATGAGAATCGCTATCATTTTTAGTATTCCATTTCCATTGGACAAGCTTATGCACATATTGTCTAAGAATTTCCAGTAGTTTTCTCCTTGAATTTCTTCTCAATTGGATTCCTTCTCATATGCATATCAAATTCATTTGAGCATCTTATGAACGATTTCAATTTTACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAACATTAGCAAAGATCCTGATGGTTATGGTATAATCTTTGGAAATCTATCACCCGGTTGTGTTAATTCAAATTTTCGATATGTTTTTAACTGAATTATGATTTGTTGTTCCTTCATTTCCCTTTGTTAAGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGATCCTCTTCAAAGCTTGTAAGTTCTTAAGTTAAGCACTCAATTTCCCACTCTTTCTGGAAAAATAAGAACTCTTGATTTAATGTGATTCATATCTGATCTTCTGAAGGTTGTTAGTGCTGATGGGAAGAAAGTTAAACGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGGTAAGATATCAACCATTGTACAAATGGTGCAGAACATTTATCTTTAGCTGAGCAAGGTGTAATGTTTTTGTTCATTGATTTGCAGTCTCGTACAGTCGTTGTGGAGAATTTGCCCGACAATCACTCGCACCACAACCTCGAGAAAATATTTAGCGTCATTGGGAGGTAGTTTCATTGATATCATCACTCAGTCTTATTCCTTGTTCTATTTGATATTAAAACTGTCTTCACTGAGCTTCATTCATTGATGATATCTGACCAGTGTGAAGACGATCCGAATCTGTCATCCCCCGGAATCAAATCCGTGCTGCTCTAAAGGTGAATTATTTATCAGTAACAAGGTATTGTGAATCATGCTTTACTTTAATGTATAACCAAGACACTTATCCTCAAAATCCCTTTCTCATTGTTACTTCATTTGCTTGAAGCTTCATGCACTTGTGGAATACGAGACCGTAGAGTTGGCTGAAAGAGCGGTATGCATCTAATAGTAAAGCTATAGCAGATCGTGTTTCTTGTTTTTCAATCTTTTTATTGTCTTTCCCCCATTTTTTGTGCCTGCTAGGCTGAGAAGTTAAATGATGAGAGAAACTGGCGGAAAGGGCTCCGAGTAAGGTTATTACTCAGACGCTCGGTAAGTGTAATAACACGATCTTAGCAGTAGCATTCTGTTTCCTCTTGCTGCATTTTGATTATTTACATGTTCATGCTTATTGCCATGCTTATTGCAACGATGGATAGCCAAAATCAGTTCTGAAGACTCGAAAATCAGAATTTGAAAGTATTCTGGATGAAGATGATTCACCATCTCCTGTATCTATTGAACAAGAATCTCCTCAGTCAAATATTGCTGAACTAACTACTGATTTCAGTGTACGTTTTTTTTCCCCGAAAACTATGTCGTTCTTGATCAAAATGATTTGTAATTCCCAAGTGACATGAAATGTCTGTTGTACTAGTCTGAGGAGAACTCAACATCATCTAAAAAGGGCTGGGGTCGAGGCCGTGGGAAGGGTCGTGGACGAGTTCATAACCATCTCGATCGTAGCTATAGCTTACCAGTTACAGCTATGCAATCGAGTAGTCAGATTCTATGTGAAGCATCGTCCAAACTCACTTCTAAGAGTCCGAGAATGCCGGATGGGACGAAAGGTTTCACCATGGGACGAGGCAAGCCATTAAATTCTAAATCTGTATTTTGAATGAATAGAAATGTAGGGAAATCTCTCTTTGATTGTTTAAGTACGGTGGAAGGAACTATGACAATTTTGCTGCTACCTATTTCATTCTTTCTTTTTTTTTTTTTCCTTTTTAATCGACATGTTTGATAGGATTTTGGTTTGTATAATGTGGCGCTAGCCATCCATTCACTGTGAGCAACTTCAACTGTTTTTCTAGCTTTATCCTTTTCATATTGTCTTGACCTGTTCTTCGACGTGTTGGAAATCTGTGCAACCATCGGCGAGGGGACGAAAATCGCACGATTCCAGTTGTTGTAGGTAAGCCTTGTTTTGTTTTCAAATCTCCCTCAAGTTGTCGTTTTTGTGCTCTTCGATCTTCTTCTCTGTCTCGTTTCCATTTCAGGGTGTTTGCTGTCGTGTTGCACCTTACCATGGTTCACCATTGTGATTCCTTGGCCGCAACTGGATTTTTCCCAATGATCGTTGCTGCCATCTTCATAGAGGAATGGTGAGCAGAAATGTTCAACTGGAACAAGTAAGAAAATTGGTCTTTCAAACTGTTTTGATCTGGTTTTAGGAGGCTCGTTCGATCCAGTTTCAGATTGATTTTATGGATTTTCAATCGGTTTAGTTGAGTTCACGTGTATTCCAACCTGTTCGTGTCGAGTCTGACTTACTGCATTTCATGTTGGTTTCCCTTCTGTTTTGGAGTTTTTCTTGCTTTTTGGACTAAATTCAAATGGAATTTTTATTTTTTTAGCATAGAGTTGTTGGATTAATTCTTGTATGTATTGAAGATCGTTGGTGAAGTTGAAATCCATTGGGGTTGAACCTGTTTAAGTTAGCAAGCTTACCTTTTGGAATGTTTTTAAGAGGCTTGGTTGAATGAAATATATGAGTTATTGAAATAAAGGATGATAT

mRNA sequence

CTGTAGCCACAATTTGAACGAAGATCCATTACAAAATCAAAAGGAACACAAGCGTTAACCAGAGCGAAGGGAGGAGGCGAGATTTTCGTTGGAGAAGAAGGCGAAATGGATGGCCATGGCAGAATTCCCACCTCGAAATCGTCGGTCAAATTCGAAACCAACGGCCCTTTGTCACAAAATCCTAGCGTCCTCTCGATCCAGCCCCAGATGCATATATTTGGCCGCGAAATCTGCGTCGATTTACAGATTTCTGTTACTAAACTTCAGGCCAAATCTTACACCCACACACACACAGAAAGAGATTGAGATTTCAATAACCCATATGCGTTTCAAACCCTACTTCGATTAATCGCAAGCAAAAAGGAAGAAAATGGCGGAAGCGAATTCGGAAGAGAAGGTGAATGAGAATCCTGAAATGGATGTCAAAGAAGCTGTGAATGGCGATGGTGTTGGTAGTAGTAATAGCAATGGTAATCTTTCCTTCAAATTTAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCCTATTTTCATTTTCTTGGTGGGGCTCCTGCTACTTCAGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCTCTCCCAAATTTCTCTAAGAACGCCCGTTCGGAGGATATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAACATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGATCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAACGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGTCTCGTACAGTCGTTGTGGAGAATTTGCCCGACAATCACTCGCACCACAACCTCGAGAAAATATTTAGCGTCATTGGGAGTGTGAAGACGATCCGAATCTGTCATCCCCCGGAATCAAATCCGTGCTGCTCTAAAGGTGAATTATTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACCGTAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGCGGAAAGGGCTCCGAGTAAGGTTATTACTCAGACGCTCGCCAAAATCAGTTCTGAAGACTCGAAAATCAGAATTTGAAAGTATTCTGGATGAAGATGATTCACCATCTCCTGTATCTATTGAACAAGAATCTCCTCAGTCAAATATTGCTGAACTAACTACTGATTTCAGTTCTGAGGAGAACTCAACATCATCTAAAAAGGGCTGGGGTCGAGGCCGTGGGAAGGGTCGTGGACGAGTTCATAACCATCTCGATCGTAGCTATAGCTTACCAGTTACAGCTATGCAATCGAGTAGTCAGATTCTATGTGAAGCATCGTCCAAACTCACTTCTAAGAGTCCGAGAATGCCGGATGGGACGAAAGGTTTCACCATGGGACGAGGCAAGCCATTAAATTCTAAATCTCTTTATCCTTTTCATATTGTCTTGACCTGTTCTTCGACGTGTTGGAAATCTGTGCAACCATCGGCGAGGGGACGAAAATCGCACGATTCCAGTTGTTGTAGGGTGTTTGCTGTCGTGTTGCACCTTACCATGGTTCACCATTGTGATTCCTTGGCCGCAACTGGATTTTTCCCAATGATCGTTGCTGCCATCTTCATAGAGGAATGGTGAGCAGAAATGTTCAACTGGAACAAGTAAGAAAATTGGTCTTTCAAACTGTTTTGATCTGGTTTTAGGAGGCTCGTTCGATCCAGTTTCAGATTGATTTTATGGATTTTCAATCGGTTTAGTTGAGTTCACGTGTATTCCAACCTGTTCGTGTCGAGTCTGACTTACTGCATTTCATGTTGGTTTCCCTTCTGTTTTGGAGTTTTTCTTGCTTTTTGGACTAAATTCAAATGGAATTTTTATTTTTTTAGCATAGAGTTGTTGGATTAATTCTTGTATGTATTGAAGATCGTTGGTGAAGTTGAAATCCATTGGGGTTGAACCTGTTTAAGTTAGCAAGCTTACCTTTTGGAATGTTTTTAAGAGGCTTGGTTGAATGAAATATATGAGTTATTGAAATAAAGGATGATAT

Coding sequence (CDS)

ATGGCGGAAGCGAATTCGGAAGAGAAGGTGAATGAGAATCCTGAAATGGATGTCAAAGAAGCTGTGAATGGCGATGGTGTTGGTAGTAGTAATAGCAATGGTAATCTTTCCTTCAAATTTAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCCTATTTTCATTTTCTTGGTGGGGCTCCTGCTACTTCAGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCTCTCCCAAATTTCTCTAAGAACGCCCGTTCGGAGGATATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAACATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGATCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAACGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGTCTCGTACAGTCGTTGTGGAGAATTTGCCCGACAATCACTCGCACCACAACCTCGAGAAAATATTTAGCGTCATTGGGAGTGTGAAGACGATCCGAATCTGTCATCCCCCGGAATCAAATCCGTGCTGCTCTAAAGGTGAATTATTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACCGTAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGCGGAAAGGGCTCCGAGTAAGGTTATTACTCAGACGCTCGCCAAAATCAGTTCTGAAGACTCGAAAATCAGAATTTGAAAGTATTCTGGATGAAGATGATTCACCATCTCCTGTATCTATTGAACAAGAATCTCCTCAGTCAAATATTGCTGAACTAACTACTGATTTCAGTTCTGAGGAGAACTCAACATCATCTAAAAAGGGCTGGGGTCGAGGCCGTGGGAAGGGTCGTGGACGAGTTCATAACCATCTCGATCGTAGCTATAGCTTACCAGTTACAGCTATGCAATCGAGTAGTCAGATTCTATGTGAAGCATCGTCCAAACTCACTTCTAAGAGTCCGAGAATGCCGGATGGGACGAAAGGTTTCACCATGGGACGAGGCAAGCCATTAAATTCTAAATCTCTTTATCCTTTTCATATTGTCTTGACCTGTTCTTCGACGTGTTGGAAATCTGTGCAACCATCGGCGAGGGGACGAAAATCGCACGATTCCAGTTGTTGTAGGGTGTTTGCTGTCGTGTTGCACCTTACCATGGTTCACCATTGTGATTCCTTGGCCGCAACTGGATTTTTCCCAATGATCGTTGCTGCCATCTTCATAGAGGAATGGTGA

Protein sequence

MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVLTCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVHHCDSLAATGFFPMIVAAIFIEEW

Homology

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BLAST of CmoCh02G004430 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 8.4e-106
Identity = 230/453 (50.77%), Postives = 293/453 (64.68%), Query Frame = 0


Query: 12  ENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQ------MPVTGYFHPYF 71
           E  E    E    DG G S+     +FKFNAQAPEF PRS T        PV+GYF+P F
Sbjct: 7   EEVESVTTEKKRLDGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCF 66

Query: 72  HFLGG-----------------APATSDWFFIGDQEPT------------YLIPNPTIPL 131
           H+ GG                    +SDW ++G  +PT            + I NP +  
Sbjct: 67  HYNGGCIGGCGGGVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQF 126

Query: 132 P------NFSKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISS 191
           P      + SKN  S+D++ KIVKQVEYQF+DMSLLANES++K+ISKDP+GYVP+S I+S
Sbjct: 127 PASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIAS 186

Query: 192 TKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDN 251
           TKK+K+L++N++L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL  RTVV ENLPD+
Sbjct: 187 TKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDD 246

Query: 252 HSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEK 311
           HS+ NLEKIF V+G+VK IRICHPPESN    KG+  +SNK+HAL+EY+   +A++A EK
Sbjct: 247 HSYQNLEKIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEK 306

Query: 312 LNDERNWRKGLRVRLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELT 371
           LNDERNWRKGLRVRLLLR SPKSVLK R++ F+ IL +D+ PS  S E +SP+ ++ E  
Sbjct: 307 LNDERNWRKGLRVRLLLRCSPKSVLKNRRN-FDGILIDDELPSYESGE-DSPRLHLTESQ 366

Query: 372 TDFSSEENSTSSKKGWGRGRGKGRGRVHNHL-----DRSY------SLPVTAMQSSSQIL 413
            D   ++N+      WG+GRGKGRGR           RS+      SL + ++ S     
Sbjct: 367 LDNDGDDNNVGGL--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHE--- 426

[Close]

BLAST of CmoCh02G004430 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 5.7e-54
Identity = 142/362 (39.23%), Postives = 193/362 (53.31%), Query Frame = 0


Query: 100 SKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLST 159
           SK    ED  QKIV QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 160 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 219
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 220 FSVIGSVKTIRICH--------PPESNPCCSKGELFISNKLHALVEYETVELAERAAEKL 279
           FS +GSVK IR C         PP +           SNK+HA VEYE VELAERA  +L
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTEL 364

Query: 280 NDERNWRKGLRVRLLLRRSPKSVL----KTRKSEFESILDEDDSPSPVSIEQESPQSNIA 339
           ++  NWR GL+VRL+L+   K       + RK     +  E+D  +       S Q  I 
Sbjct: 365 SEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDAT------TSEQQPIE 424

Query: 340 ELTTDFSSE----------------ENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTA 399
           + + D S E                E +   +KG  RGRGKGRGR   H +++ +   + 
Sbjct: 425 KQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSH 484

Query: 400 MQSSS-------------QILCEASS------------KLTSKSPRMPDGTKGFTMGRGK 409
            Q+ +             Q+  + S+            K     PRMPDGT+GF+MGRGK
Sbjct: 485 NQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGK 540

[Close]

BLAST of CmoCh02G004430 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.7e-43
Identity = 121/314 (38.54%), Postives = 174/314 (55.41%), Query Frame = 0


Query: 106 EDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIV 165
           +++ QKI++QVEY FSD +L  ++ L   + ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 166 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 225
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 226 VKTIRICHP--PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRV 285
           +K++ IC P   E +    K E FI  +LHA VEYETVE AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 286 RLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIE---------QESPQSNIAELTTDFS 345
           +LL + + K     R+     +  E D+   V  +         +E     +        
Sbjct: 281 KLLEQAAGK--FAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPAD 340

Query: 346 SEENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMP 405
            +  +    K   +GR  G+GR  NH   +     TA  SS               PRMP
Sbjct: 341 DDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMP 400

Query: 406 DGTKGFTMGRGKPL 409
           DGT+GFTMGRGK +
Sbjct: 401 DGTRGFTMGRGKAI 410

[Close]

BLAST of CmoCh02G004430 vs. ExPASy Swiss-Prot
Match: Q05CL8 (La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-19
Identity = 64/173 (36.99%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 101 KNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTN 160
           K +R + +   I KQV++ F D +L  ++ L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 21  KRSRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 80

Query: 161 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIF 220
             LI +AL+SSS + +  +G +++RK P  ++ K+E   RTV VE LP N +H  +E++F
Sbjct: 81  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 140

Query: 221 SVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLND 274
              G+V  I I H   +             K  A VE+ET E A +A E LN+
Sbjct: 141 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 182

[Close]

BLAST of CmoCh02G004430 vs. ExPASy Swiss-Prot
Match: Q5XI01 (La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-18
Identity = 73/237 (30.80%), Postives = 124/237 (52.32%), Query Frame = 0


Query: 101 KNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTN 160
           K +R + +   I KQV++ F D +L  +  L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 22  KRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 81

Query: 161 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIF 220
             LI +AL+SSS + +  +G +++RK P  ++ K+E   RTV VE LP N +H  +E++F
Sbjct: 82  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 141

Query: 221 SVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLN---DERNW 280
              G+V  I I H   +             K  A VE+ET E A +A E LN   +E   
Sbjct: 142 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNNPPEEAPR 201

Query: 281 RKGLRVRLLLRRSPKSVL----KTRKSEFESILDEDDSPSPVSIEQESPQSNIAELT 331
           + G+  + +  +   S+     K +K + +  + +++S     +  +S  S +++ T
Sbjct: 202 KPGIFPKTVKNKPIPSLRVAEEKKKKKKKKGRIKKEESVQAKELVVDSSSSGVSKAT 247

[Close]

BLAST of CmoCh02G004430 vs. ExPASy TrEMBL
Match: A0A6J1G8K6 (la-related protein 6C OS=Cucurbita moschata OX=3662 GN=LOC111451813 PE=4 SV=1)

HSP 1 Score: 805.1 bits (2078), Expect = 1.6e-229
Identity = 412/414 (99.52%), Postives = 414/414 (100.00%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60
           MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY
Sbjct: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60

Query: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120
           FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF
Sbjct: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120

Query: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180
           SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG
Sbjct: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180

Query: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240
           KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC
Sbjct: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240

Query: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300
           CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS
Sbjct: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300

Query: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360
           EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH
Sbjct: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360

Query: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKS++
Sbjct: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSVF 414

[Close]

BLAST of CmoCh02G004430 vs. ExPASy TrEMBL
Match: A0A6J1L340 (la-related protein 6C OS=Cucurbita maxima OX=3661 GN=LOC111499965 PE=4 SV=1)

HSP 1 Score: 800.0 bits (2065), Expect = 5.3e-228
Identity = 409/414 (98.79%), Postives = 413/414 (99.76%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60
           MAEANSEEKVNENPEM+VKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY
Sbjct: 1   MAEANSEEKVNENPEMEVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60

Query: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120
           FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF
Sbjct: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120

Query: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180
           SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG
Sbjct: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180

Query: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240
           KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC
Sbjct: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240

Query: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300
           CSKGELFISNKLHALVEYETVELA+RAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS
Sbjct: 241 CSKGELFISNKLHALVEYETVELADRAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300

Query: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360
           EFESILDEDDSPSPVSIEQESPQSNIAEL TDFSSEENSTSSKKGWGRGRGKGRGRVHNH
Sbjct: 301 EFESILDEDDSPSPVSIEQESPQSNIAELITDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360

Query: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKS++
Sbjct: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSVF 414

[Close]

BLAST of CmoCh02G004430 vs. ExPASy TrEMBL
Match: A0A6J1L529 (la-related protein 6C-like OS=Cucurbita maxima OX=3661 GN=LOC111499964 PE=4 SV=1)

HSP 1 Score: 730.7 bits (1885), Expect = 3.9e-207
Identity = 374/416 (89.90%), Postives = 395/416 (94.95%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMD-VKEAVNGD-GVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVT 60
           MAEAN E+KVN NPEM+ VK+AVNGD GVGSS SNG+LSFKFNAQAPEFFPRSQTQMPV+
Sbjct: 1   MAEANPEKKVNSNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVS 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKN RS+DI QK++KQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLIKQVEY 120

Query: 121 QFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAK+ISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESN 240
           DGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKT+RICHPPESN
Sbjct: 181 DGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPPESN 240

Query: 241 PCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTR 300
           PCCSKGELFISNKLHALVEYET ELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTR
Sbjct: 241 PCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTR 300

Query: 301 KSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVH 360
           KS+F+ ILDEDDSPS VS EQES   NI EL  D SSEENSTS+KKGWGRGRGKGRGR+H
Sbjct: 301 KSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRGRIH 360

Query: 361 NHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           +HLDRS SLPV AMQSSSQ++CEASSKLT+KSPRMPDGTKGFTMGRGKPL+SK ++
Sbjct: 361 SHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPVF 416

[Close]

BLAST of CmoCh02G004430 vs. ExPASy TrEMBL
Match: A0A6J1G8M9 (la-related protein 6C-like OS=Cucurbita moschata OX=3662 GN=LOC111451873 PE=4 SV=1)

HSP 1 Score: 728.8 bits (1880), Expect = 1.5e-206
Identity = 374/416 (89.90%), Postives = 394/416 (94.71%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMD-VKEAVNGD-GVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVT 60
           MAE+N E+KVN NPEM+ VK+AVNGD GVGSS SNG+LSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKN RS+DI QK+VKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120

Query: 121 QFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAK+ISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESN 240
           DGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKT+RICHPPESN
Sbjct: 181 DGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPPESN 240

Query: 241 PCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTR 300
           PCCSKGELFISNKLHALVEYE  ELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTR
Sbjct: 241 PCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTR 300

Query: 301 KSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVH 360
           KS+F+ ILDEDDSPS VS EQES   NI EL  D SSEENSTS+KKGWGRGRGKGRGR+H
Sbjct: 301 KSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRGRIH 360

Query: 361 NHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           +HLDRS SLPV AMQSSSQ++CEASSKLT+KSPRMPDGTKGFTMGRGKPL+SK ++
Sbjct: 361 SHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPVF 416

[Close]

BLAST of CmoCh02G004430 vs. ExPASy TrEMBL
Match: A0A6J1D5P1 (la-related protein 6C OS=Momordica charantia OX=3673 GN=LOC111017163 PE=4 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 1.7e-202
Identity = 369/420 (87.86%), Postives = 394/420 (93.81%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVN------GDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQ 60
           MA+ANSEEKV+E PEM+ KEAVN      GDG G SNS+GNL FKFNAQAPEFFPRSQTQ
Sbjct: 1   MAQANSEEKVSETPEMETKEAVNGNGNGDGDGDGGSNSSGNLPFKFNAQAPEFFPRSQTQ 60

Query: 61  MPVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVK 120
           +PVTGYFHPYFHFLGGAPATSDWFFIGDQEP YLIPN TIPLPNFSKN RS+DIQQKIVK
Sbjct: 61  VPVTGYFHPYFHFLGGAPATSDWFFIGDQEPAYLIPNATIPLPNFSKNVRSDDIQQKIVK 120

Query: 121 QVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKL 180
           QVEYQFSDMSLLANESLAK+ISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSS+L
Sbjct: 121 QVEYQFSDMSLLANESLAKHISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSRL 180

Query: 181 VVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP 240
           VVS+DGKKV+RKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP
Sbjct: 181 VVSSDGKKVRRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP 240

Query: 241 PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSV 300
           PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSV
Sbjct: 241 PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSV 300

Query: 301 LKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGR 360
           LKTRKSEF+SILDEDDSPSPVSIE+ S  SNI EL  D +SEENST+SKKGWGRGRGKGR
Sbjct: 301 LKTRKSEFDSILDEDDSPSPVSIEEPS-LSNITELIVDCNSEENSTASKKGWGRGRGKGR 360

Query: 361 GRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           GR+H+H DR  S+PVT +Q+SSQ++CEAS+KLTSKSPRMPDGTKGFTMGRGKPL+SK ++
Sbjct: 361 GRIHSHSDR--SVPVTQVQASSQVVCEASTKLTSKSPRMPDGTKGFTMGRGKPLSSKPVF 417

[Close]

BLAST of CmoCh02G004430 vs. NCBI nr
Match: KAG7035123.1 (La-related protein 6C [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 941.0 bits (2431), Expect = 3.9e-270
Identity = 478/480 (99.58%), Postives = 480/480 (100.00%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60
           MAEANSEEKVNENPEM+VKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY
Sbjct: 1   MAEANSEEKVNENPEMEVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60

Query: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120
           FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF
Sbjct: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120

Query: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180
           SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG
Sbjct: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180

Query: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240
           KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC
Sbjct: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240

Query: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300
           CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS
Sbjct: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300

Query: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360
           EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH
Sbjct: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360

Query: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVL 420
           LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVL
Sbjct: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVL 420

Query: 421 TCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVHHCDSLAATGFFPMIVAAIFIEE 480
           TCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMV+HCDSLAATGFFPMIVAAIFIEE
Sbjct: 421 TCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVYHCDSLAATGFFPMIVAAIFIEE 480

[Close]

BLAST of CmoCh02G004430 vs. NCBI nr
Match: KAG6605122.1 (La-related protein 6C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 938.3 bits (2424), Expect = 2.6e-269
Identity = 477/480 (99.38%), Postives = 479/480 (99.79%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60
           MAEANSEEKVNENPEM+VKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY
Sbjct: 1   MAEANSEEKVNENPEMEVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60

Query: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120
           FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF
Sbjct: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120

Query: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180
           SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG
Sbjct: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180

Query: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240
           KKV+RKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC
Sbjct: 181 KKVRRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240

Query: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300
           CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS
Sbjct: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300

Query: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360
           EFESILDEDDSPSPVSIEQES QSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH
Sbjct: 301 EFESILDEDDSPSPVSIEQESLQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360

Query: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVL 420
           LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVL
Sbjct: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLYPFHIVL 420

Query: 421 TCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVHHCDSLAATGFFPMIVAAIFIEE 480
           TCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVHHCDSLAATGFFPMIVAAIFIEE
Sbjct: 421 TCSSTCWKSVQPSARGRKSHDSSCCRVFAVVLHLTMVHHCDSLAATGFFPMIVAAIFIEE 480

[Close]

BLAST of CmoCh02G004430 vs. NCBI nr
Match: XP_022948148.1 (la-related protein 6C [Cucurbita moschata])

HSP 1 Score: 805.1 bits (2078), Expect = 3.4e-229
Identity = 412/414 (99.52%), Postives = 414/414 (100.00%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60
           MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY
Sbjct: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60

Query: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120
           FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF
Sbjct: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120

Query: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180
           SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG
Sbjct: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180

Query: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240
           KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC
Sbjct: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240

Query: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300
           CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS
Sbjct: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300

Query: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360
           EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH
Sbjct: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360

Query: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKS++
Sbjct: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSVF 414

[Close]

BLAST of CmoCh02G004430 vs. NCBI nr
Match: XP_023533918.1 (la-related protein 6C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 803.5 bits (2074), Expect = 9.8e-229
Identity = 411/414 (99.28%), Postives = 414/414 (100.00%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60
           MAEANSEEKVNENPEM+VKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY
Sbjct: 1   MAEANSEEKVNENPEMEVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60

Query: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120
           FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF
Sbjct: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120

Query: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180
           SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG
Sbjct: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180

Query: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240
           KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC
Sbjct: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240

Query: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300
           CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS
Sbjct: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300

Query: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360
           EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH
Sbjct: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360

Query: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKS++
Sbjct: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSVF 414

[Close]

BLAST of CmoCh02G004430 vs. NCBI nr
Match: XP_023007490.1 (la-related protein 6C [Cucurbita maxima])

HSP 1 Score: 800.0 bits (2065), Expect = 1.1e-227
Identity = 409/414 (98.79%), Postives = 413/414 (99.76%), Query Frame = 0


Query: 1   MAEANSEEKVNENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60
           MAEANSEEKVNENPEM+VKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY
Sbjct: 1   MAEANSEEKVNENPEMEVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVTGY 60

Query: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120
           FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF
Sbjct: 61  FHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEYQF 120

Query: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180
           SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG
Sbjct: 121 SDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADG 180

Query: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240
           KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC
Sbjct: 181 KKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPC 240

Query: 241 CSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300
           CSKGELFISNKLHALVEYETVELA+RAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS
Sbjct: 241 CSKGELFISNKLHALVEYETVELADRAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKS 300

Query: 301 EFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360
           EFESILDEDDSPSPVSIEQESPQSNIAEL TDFSSEENSTSSKKGWGRGRGKGRGRVHNH
Sbjct: 301 EFESILDEDDSPSPVSIEQESPQSNIAELITDFSSEENSTSSKKGWGRGRGKGRGRVHNH 360

Query: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSLY 415
           LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKS++
Sbjct: 361 LDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSVF 414

[Close]

BLAST of CmoCh02G004430 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 385.6 bits (989), Expect = 6.0e-107
Identity = 230/453 (50.77%), Postives = 293/453 (64.68%), Query Frame = 0


Query: 12  ENPEMDVKEAVNGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQ------MPVTGYFHPYF 71
           E  E    E    DG G S+     +FKFNAQAPEF PRS T        PV+GYF+P F
Sbjct: 7   EEVESVTTEKKRLDGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCF 66

Query: 72  HFLGG-----------------APATSDWFFIGDQEPT------------YLIPNPTIPL 131
           H+ GG                    +SDW ++G  +PT            + I NP +  
Sbjct: 67  HYNGGCIGGCGGGVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQF 126

Query: 132 P------NFSKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISS 191
           P      + SKN  S+D++ KIVKQVEYQF+DMSLLANES++K+ISKDP+GYVP+S I+S
Sbjct: 127 PASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIAS 186

Query: 192 TKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDN 251
           TKK+K+L++N++L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL  RTVV ENLPD+
Sbjct: 187 TKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDD 246

Query: 252 HSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEK 311
           HS+ NLEKIF V+G+VK IRICHPPESN    KG+  +SNK+HAL+EY+   +A++A EK
Sbjct: 247 HSYQNLEKIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEK 306

Query: 312 LNDERNWRKGLRVRLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELT 371
           LNDERNWRKGLRVRLLLR SPKSVLK R++ F+ IL +D+ PS  S E +SP+ ++ E  
Sbjct: 307 LNDERNWRKGLRVRLLLRCSPKSVLKNRRN-FDGILIDDELPSYESGE-DSPRLHLTESQ 366

Query: 372 TDFSSEENSTSSKKGWGRGRGKGRGRVHNHL-----DRSY------SLPVTAMQSSSQIL 413
            D   ++N+      WG+GRGKGRGR           RS+      SL + ++ S     
Sbjct: 367 LDNDGDDNNVGGL--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHE--- 426

[Close]

BLAST of CmoCh02G004430 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 213.4 bits (542), Expect = 4.0e-55
Identity = 142/362 (39.23%), Postives = 193/362 (53.31%), Query Frame = 0


Query: 100 SKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLST 159
           SK    ED  QKIV QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 160 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 219
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 220 FSVIGSVKTIRICH--------PPESNPCCSKGELFISNKLHALVEYETVELAERAAEKL 279
           FS +GSVK IR C         PP +           SNK+HA VEYE VELAERA  +L
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTEL 364

Query: 280 NDERNWRKGLRVRLLLRRSPKSVL----KTRKSEFESILDEDDSPSPVSIEQESPQSNIA 339
           ++  NWR GL+VRL+L+   K       + RK     +  E+D  +       S Q  I 
Sbjct: 365 SEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDAT------TSEQQPIE 424

Query: 340 ELTTDFSSE----------------ENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTA 399
           + + D S E                E +   +KG  RGRGKGRGR   H +++ +   + 
Sbjct: 425 KQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSH 484

Query: 400 MQSSS-------------QILCEASS------------KLTSKSPRMPDGTKGFTMGRGK 409
            Q+ +             Q+  + S+            K     PRMPDGT+GF+MGRGK
Sbjct: 485 NQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGK 540

[Close]

BLAST of CmoCh02G004430 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-45
Identity = 128/354 (36.16%), Postives = 178/354 (50.28%), Query Frame = 0


Query: 100 SKNARSEDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLST 159
           SK    ED  QKIV QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 160 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 219
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 220 FSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRK 279
           FS +GSVK IR C P  +           +     L   +  EL+E          NWR 
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVTELSEAG--------NWRS 364

Query: 280 GLRVRLLLRRSPKSVL----KTRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSS 339
           GL+VRL+L+   K       + RK     +  E+D  +       S Q  I + + D S 
Sbjct: 365 GLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDAT------TSEQQPIEKQSDDCSG 424

Query: 340 E----------------ENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTAMQSSS--- 399
           E                E +   +KG  RGRGKGRGR   H +++ +   +  Q+ +   
Sbjct: 425 EWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNG 484

Query: 400 ----------QILCEASS------------KLTSKSPRMPDGTKGFTMGRGKPL 409
                     Q+  + S+            K     PRMPDGT+GF+MGRGKP+
Sbjct: 485 RGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPV 524

[Close]

BLAST of CmoCh02G004430 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-44
Identity = 121/314 (38.54%), Postives = 174/314 (55.41%), Query Frame = 0


Query: 106 EDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIV 165
           +++ QKI++QVEY FSD +L  ++ L   + ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 166 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 225
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 226 VKTIRICHP--PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRV 285
           +K++ IC P   E +    K E FI  +LHA VEYETVE AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 286 RLLLRRSPKSVLKTRKSEFESILDEDDSPSPVSIE---------QESPQSNIAELTTDFS 345
           +LL + + K     R+     +  E D+   V  +         +E     +        
Sbjct: 281 KLLEQAAGK--FAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPAD 340

Query: 346 SEENSTSSKKGWGRGRGKGRGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMP 405
            +  +    K   +GR  G+GR  NH   +     TA  SS               PRMP
Sbjct: 341 DDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMP 400

Query: 406 DGTKGFTMGRGKPL 409
           DGT+GFTMGRGK +
Sbjct: 401 DGTRGFTMGRGKAI 410

[Close]

BLAST of CmoCh02G004430 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-38
Identity = 89/189 (47.09%), Postives = 129/189 (68.25%), Query Frame = 0


Query: 106 EDIQQKIVKQVEYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIV 165
           +++ QKI++QVEY FSD +L  ++ L   + ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 166 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 225
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 226 VKTIRICHP--PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRV 285
           +K++ IC P   E +    K E FI  +LHA VEYETVE AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 286 RLLLRRSPK 293
           +LL + + K
Sbjct: 281 KLLEQAAGK 287

The following BLAST results are available for this feature:

BLAST of CmoCh02G004430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHL3	8.4e-106	50.77	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
O80567	5.7e-54	39.23	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q94A38	2.7e-43	38.54	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q05CL8	1.6e-19	36.99	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2	[more]
Q5XI01	6.6e-18	30.80	La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2	[more]

BLAST of CmoCh02G004430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8K6	1.6e-229	99.52	la-related protein 6C OS=Cucurbita moschata OX=3662 GN=LOC111451813 PE=4 SV=1	[more]
A0A6J1L340	5.3e-228	98.79	la-related protein 6C OS=Cucurbita maxima OX=3661 GN=LOC111499965 PE=4 SV=1	[more]
A0A6J1L529	3.9e-207	89.90	la-related protein 6C-like OS=Cucurbita maxima OX=3661 GN=LOC111499964 PE=4 SV=1	[more]
A0A6J1G8M9	1.5e-206	89.90	la-related protein 6C-like OS=Cucurbita moschata OX=3662 GN=LOC111451873 PE=4 SV...	[more]
A0A6J1D5P1	1.7e-202	87.86	la-related protein 6C OS=Momordica charantia OX=3673 GN=LOC111017163 PE=4 SV=1	[more]

BLAST of CmoCh02G004430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035123.1	3.9e-270	99.58	La-related protein 6C [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605122.1	2.6e-269	99.38	La-related protein 6C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022948148.1	3.4e-229	99.52	la-related protein 6C [Cucurbita moschata]	[more]
XP_023533918.1	9.8e-229	99.28	la-related protein 6C [Cucurbita pepo subsp. pepo]	[more]
XP_023007490.1	1.1e-227	98.79	la-related protein 6C [Cucurbita maxima]	[more]

BLAST of CmoCh02G004430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19090.1	6.0e-107	50.77	RNA-binding protein	[more]
AT2G43970.1	4.0e-55	39.23	RNA-binding protein	[more]
AT2G43970.2	2.9e-45	36.16	RNA-binding protein	[more]
AT5G46250.1	1.9e-44	38.54	RNA-binding protein	[more]
AT5G46250.2	2.6e-38	47.09	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 115..132 score: 38.89 coord: 172..185 score: 35.06 coord: 194..210 score: 24.06 coord: 141..156 score: 28.41
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 201..284 e-value: 0.0022 score: 27.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 202..273 e-value: 7.9E-7 score: 28.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 200..290 score: 10.616019
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 106..186 e-value: 1.0E-36 score: 138.0
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 112..169 e-value: 2.9E-16 score: 59.2
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 102..193 score: 23.749836
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 192..293 e-value: 2.6E-12 score: 48.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 104..191 e-value: 1.1E-24 score: 88.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 315..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR22792:SF62	LA-RELATED PROTEIN 6C	coord: 3..410
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 3..410
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 186..293
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 104..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004430.1	CmoCh02G004430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005844	polysome
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding