CmoCh01G011190 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G011190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionsperm mitochondrial-associated cysteine-rich protein-like
LocationCmo_Chr01: 9252742 .. 9253140 (+)
RNA-Seq ExpressionCmoCh01G011190
SyntenyCmoCh01G011190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCGGCGAAATTTCTGACTCTGGTTATCGTCTTCCACCTCAAATCCGCCATCACCGCCGCCGACGACGCCTCCATGCCCACACCGACCTCCTGCGAGAACTGCGCCCTTTGTCAATCCGCCTGCCGTCCGCCTCCTGATGCACAACCGCTATTGCCGCCTCCACCACCGCCGCCAATTGCAGAGCCAGAGCCACTTCCGGTGCCGGTTCCCCCGGGGAACTGTCCTCCCACTATTGTCCAGTGCTGCCAGTTTATGCCGCCACCGGCACCGCCGCCGCCGCCGAATGGTAATAATATATATACGCCGTTTTATAATGAGTCGTGTTCTTCATTTTTGAAACGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGGTGGCCGCCATTTTCTGA

mRNA sequence

ATGTCTCCGGCGAAATTTCTGACTCTGGTTATCGTCTTCCACCTCAAATCCGCCATCACCGCCGCCGACGACGCCTCCATGCCCACACCGACCTCCTGCGAGAACTGCGCCCTTTGTCAATCCGCCTGCCGTCCGCCTCCTGATGCACAACCGCTATTGCCGCCTCCACCACCGCCGCCAATTGCAGAGCCAGAGCCACTTCCGGTGCCGGTTCCCCCGGGGAACTGTCCTCCCACTATTGTCCAGTGCTGCCAGTTTATGCCGCCACCGGCACCGCCGCCGCCGCCGAATGGTAATAATATATATACGCCGTTTTATAATGAGTCGTGTTCTTCATTTTTGAAACGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGGTGGCCGCCATTTTCTGA

Coding sequence (CDS)

ATGTCTCCGGCGAAATTTCTGACTCTGGTTATCGTCTTCCACCTCAAATCCGCCATCACCGCCGCCGACGACGCCTCCATGCCCACACCGACCTCCTGCGAGAACTGCGCCCTTTGTCAATCCGCCTGCCGTCCGCCTCCTGATGCACAACCGCTATTGCCGCCTCCACCACCGCCGCCAATTGCAGAGCCAGAGCCACTTCCGGTGCCGGTTCCCCCGGGGAACTGTCCTCCCACTATTGTCCAGTGCTGCCAGTTTATGCCGCCACCGGCACCGCCGCCGCCGCCGAATGGTAATAATATATATACGCCGTTTTATAATGAGTCGTGTTCTTCATTTTTGAAACGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGGTGGCCGCCATTTTCTGA

Protein sequence

MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPPIAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVSVLAPVFGVAAIF
Homology
BLAST of CmoCh01G011190 vs. ExPASy TrEMBL
Match: A0A1S3CI95 (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 95/137 (69.34%), Postives = 107/137 (78.10%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPP-PDAQPLLPPPPPP 60
           M PAK L LV+VF+L SA++A DDA+M TP SC+NC +CQS CRPP  +  PLLPPPPPP
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60

Query: 61  --PIAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPN-GN-NIYTPFYNESCSSFLK 120
             P AEPEPLP+PV P NCPPTIVQCCQF+PPP PPP    GN NIYTP YNES SSFL+
Sbjct: 61  PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120

Query: 121 RGLVSVLAPVFGVAAIF 133
            GL S LAPVFG+ AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

BLAST of CmoCh01G011190 vs. ExPASy TrEMBL
Match: A0A0A0K536 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.8e-35
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60
           M PAK L LV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL   L PPP
Sbjct: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 103

Query: 61  PPPIAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120
           P P AEPEPLP PV P NCPPTIVQCCQF+PPP PPP       N+YTP YN S SSFL+
Sbjct: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 163

Query: 121 RGLVSVLAPVFGVAAIF 133
            GL S LAPVFG+ AIF
Sbjct: 164 VGLGSALAPVFGLLAIF 178

BLAST of CmoCh01G011190 vs. ExPASy TrEMBL
Match: A0A443NET1 (Nitrile-specifier protein 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00547500 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-06
Identity = 50/121 (41.32%), Postives = 62/121 (51.24%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAAD-----DASMPTPTSCENCALCQSACRPPPDAQPLLPP 60
           MS  K + LV +    S+I  A+     D ++P+P +C NC+LCQ  C P P A P   P
Sbjct: 6   MSCPKLVFLVSLRLSISSIIVAETPNPLDDNIPSPVACFNCSLCQYPCNPSPPATPAYQP 65

Query: 61  PPPPPIAEPEPLPVPVPPGNCPPT-IVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFL 116
             PPP   P P P    P NCPP+   QCCQ  PP  P PPPN      P+YN   S  L
Sbjct: 66  FAPPPSPPPPPSPSMPVPSNCPPSPPSQCCQVPPPGPPHPPPN-----IPYYNYGTSPPL 121

BLAST of CmoCh01G011190 vs. ExPASy TrEMBL
Match: A0A6A1VX00 (4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR4G016275 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 54/137 (39.42%), Postives = 65/137 (47.45%), Query Frame = 0

Query: 17  SAITAADDASMPTPTSCENCALCQSACRPP----PD----AQPLLPPPPPPPIAE----- 76
           SA   A    +P+P++C NC LCQ  C  P    PD      P LPPPPPP +AE     
Sbjct: 22  SATGEASGDVLPSPSACTNCTLCQYPCHTPAPPLPDYPLYGTPPLPPPPPPSLAEYPPYE 81

Query: 77  -PEPLPVPVPP-------GNCPP-TIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFL 132
              P P P PP       GNCPP T+VQCCQ+     PPP   G   Y P+ N S S   
Sbjct: 82  TSSPPPPPPPPPSQLPAQGNCPPTTVVQCCQY-----PPPIAYG---YVPYNNYSASCPS 141

BLAST of CmoCh01G011190 vs. ExPASy TrEMBL
Match: W9QFT0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 54/144 (37.50%), Postives = 70/144 (48.61%), Query Frame = 0

Query: 1   MSPAKFLTLVIV----FHLKSAITAADDASMPTPTSCENCALCQSAC-RPPPDAQPLL-P 60
           M  AK + ++ V    F L  A   + DA +P+PT C NC +CQ  C  PP    P    
Sbjct: 1   MISAKLVFIIAVCLSAFSLCCAWENSGDA-LPSPTPCFNCTMCQYPCLSPPASGNPSYGA 60

Query: 61  PPPPPPIAEPEPLPVPVPP------GNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNE 120
           PPPPPP     P  +P+PP      G CPPT +QCCQ+      PPPP G  +Y P YN 
Sbjct: 61  PPPPPPELPGLPADIPLPPPQQPWQGKCPPTPIQCCQY-----TPPPPYG--VYVP-YNH 120

Query: 121 SCSSFLKRGLVSVLAPVFGVAAIF 133
           +    L   L  ++  +F  A  F
Sbjct: 121 ALPCSLPIFLYVIMMLLFSSAVTF 135

BLAST of CmoCh01G011190 vs. NCBI nr
Match: KAG6607747.1 (hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
           MSPAKFL LVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP
Sbjct: 1   MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60

Query: 61  IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
           IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS
Sbjct: 61  IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120

Query: 121 VLAPVFGVAAIF 133
           VLAPVFGVAAIF
Sbjct: 121 VLAPVFGVAAIF 132

BLAST of CmoCh01G011190 vs. NCBI nr
Match: KAG7037325.1 (hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
           MSPAKFL LVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP
Sbjct: 1   MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60

Query: 61  IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
           IAEPEPLPVPVPP NCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS
Sbjct: 61  IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120

Query: 121 VLAPVFGVAAIF 133
           VLAPVFGVAAIF
Sbjct: 121 VLAPVFGVAAIF 132

BLAST of CmoCh01G011190 vs. NCBI nr
Match: XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-38
Identity = 95/137 (69.34%), Postives = 107/137 (78.10%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPP-PDAQPLLPPPPPP 60
           M PAK L LV+VF+L SA++A DDA+M TP SC+NC +CQS CRPP  +  PLLPPPPPP
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60

Query: 61  --PIAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPN-GN-NIYTPFYNESCSSFLK 120
             P AEPEPLP+PV P NCPPTIVQCCQF+PPP PPP    GN NIYTP YNES SSFL+
Sbjct: 61  PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120

Query: 121 RGLVSVLAPVFGVAAIF 133
            GL S LAPVFG+ AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

BLAST of CmoCh01G011190 vs. NCBI nr
Match: KGN44024.1 (hypothetical protein Csa_011878 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 7.8e-35
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60
           M PAK L LV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL   L PPP
Sbjct: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 103

Query: 61  PPPIAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120
           P P AEPEPLP PV P NCPPTIVQCCQF+PPP PPP       N+YTP YN S SSFL+
Sbjct: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 163

Query: 121 RGLVSVLAPVFGVAAIF 133
            GL S LAPVFG+ AIF
Sbjct: 164 VGLGSALAPVFGLLAIF 178

BLAST of CmoCh01G011190 vs. NCBI nr
Match: XP_011659730.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 7.8e-35
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 0

Query: 1   MSPAKFLTLVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60
           M PAK L LV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL   L PPP
Sbjct: 1   MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 60

Query: 61  PPPIAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120
           P P AEPEPLP PV P NCPPTIVQCCQF+PPP PPP       N+YTP YN S SSFL+
Sbjct: 61  PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 120

Query: 121 RGLVSVLAPVFGVAAIF 133
            GL S LAPVFG+ AIF
Sbjct: 121 VGLGSALAPVFGLLAIF 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CI951.2e-3869.34sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365... [more]
A0A0A0K5363.8e-3564.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1[more]
A0A443NET18.2e-0641.32Nitrile-specifier protein 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=C... [more]
A0A6A1VX002.4e-0539.424Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=C... [more]
W9QFT02.6e-0437.50Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6607747.13.2e-6599.24hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037325.11.6e-6498.48hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008463043.12.6e-3869.34PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me... [more]
KGN44024.17.8e-3564.96hypothetical protein Csa_011878 [Cucumis sativus][more]
XP_011659730.17.8e-3564.96leucine-rich repeat extensin-like protein 3 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G011190.1CmoCh01G011190.1mRNA