CmoCh01G002600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L44
Location	Cmo_Chr01: 1180294 .. 1183249 (+)
RNA-Seq Expression	CmoCh01G002600
Synteny	CmoCh01G002600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTGAAGATTTATGTGATGGAAAAAGTAAACTGCTGAAGCGATTGGTATCGTCTTGGAAGTTCAGTGTTCTGTGGAGTTTTAGTGGCGGGCACAGATGATGAATTGTTATGGTCTTCGTTTTCTTTTGCGTGCATTTTTTTTTAAATTGTTCGTACTGTCGATCTGAATTTGTGCTTAAAAGGCGACTGGTTCATCTTTTGTAGTCGAGTGATAGTGTTAACAAATTATGTTACGTGTTACTGAGCTTCTGAAGGTGCGAGAATTGACTGAGATTGGGTTGTTTCATCATGCACTTTTTTTAAGAAGGATTTTCCTCGAGTTAAACATTGCACATGGAATGTATTAATGATTCTGGATACTTGATTATGAGTTTTATGGAATATTCCATAGAAAACGGATATTAGATCAGTGAGTGCAAACGTGGTAGTGGAGGATCATATTGGTTCGTAATATTTGTTGTCTTATTGATGTTTTTAGCTAGTAGTGTCATAGTTTATAATTTGAATATGGATACTGTATTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAGTTTTTCTCTCATCCAGTCAATTCTTACTTTCTTTCTTTTCCACGAGGCAAGGAAATCAAAATTGAAGTGAAACATGTGAATCTCACAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGGTTAGAATGCCAAGTATTTCATCATTTTCTGTTCACGGGCTTTCACTATTCAGTATCTTGTTAATTTAGTGCACTTGTTCGAACAATCTTTCAAGCATATAGTGGTTTTCAAACTGCATACTTAAGGTAGTTGTCTCTGGGGTCCCATAGAGCTACATTCATTTTACCCCCTTAAAATAAATGCCACTTGACTGCTATACCTGTGAATGCCCCTGGAACACAACATTCGCATTTGGGGTGAAATATTTGGTTGGGACTCTGATTTCAATTGCAAAATTTTTTTCTAAGCACTTATCGCGATGGATTGTTAGCTGTTTTAGAAAGGTCCAAATGTGGAAAAGAAACTTTCATCAGTTAGCTGAGTACTTTGTCGTCTCCTTATTTCATTTCTAACTAAATAACTTAATTGGCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGTTACAGCATTACTCTGTTTGGTTCTCCAATTAGTTCTAAATGTCGTAACAATACTATTTAGCTTAAGCCATCTTATCTCAATTATCAAATTTCCAAATTTTTTTTGCTTTTCGTTTAGTTGTTTCTCAAAGAAACTTGTGTTTGAAGTGCTTTCATAGCTTAACCATTTGATTTTTGAGAATAATTATTGTTAGCTTACATTTAGTTCAGGCAATGATATTCATCCATTGACTTGACAGTGCTTGAATCCCACATAAGAGCCAATGTAGCCAATTGTAATTTTGAACTCACATCTTAACACCTATCCTAAAAGGCTCTACCAATCTCTTTGGACAACAAACACAACGAAAAACTTGAAGAAAAGAAAAGCCACCCTGTATCTATAACATATTTGGGTCCACTGATATCCAAATCATGTATATATGAAGCAAAAGCCAATTACCACAATAACGCTAAACCATTGGGCAACAGCATTAAAGAATGAAACCCGCTGCAAATGATTAACACTGCTGAAGAACACACAAAATTAACTCCGATTGTCAAAAAATCATGTTACATTTGAAAGGAAGAACAGAACAATCCAGTTCAAAATCCAAAATATCCATGTTTTGCACTATAACTGTCTTTTCTCAGTAGTATTTGCAATATACACATAAACGACCATATCGATACCAAAGGGATGAGTCTACTATACAAAATTGTGCCACAATGGTGTAAGAATCTTATCAAAGCCCTCCAGTTTCCCCTAAACTATGCAGCACATGACACAATGAACAAAGTTAATGGAGTTCCAATTTCCCGTATCATATAATGTATGCTATTCATGTAACTACGAAAAGTTGAACTGTGATACACCTGAAGCATGATATTGTGTAGAATTGAACTAGAAGAAGCAAACATAATATGGATAAAGTATAGACATTTGTTGTCATACGAGCAAAATTTGAAATTCTATTAAATTTCAAGCTTTTCTCTTTGAAATGCTAATAACAATACTGATCCAAACAGCTAAATCAACATTTAGCTAAGAAAAAAACAATCAATTCCATCACATCTAGGTAGATATGATCAGCTTTTAGAGAATTCTAACAAAAGTCAGTATGGAACTTTGAAATGCCACGCTTTTGCGTCATAATCCTACCTCGCATTCTTAATTTGAACCTTTATCCTTGCCTTGAGAACCAACTGCATCAGTCACCAGAGCTATTGGCCTTTGATCCATTACCTCGTCGATAATGCCAAACTCTTTGGCCTCTTCTGGGGTCATGAAATAATCCCTATCCATATACTCTTTGATAGTATCTATTGGTTGTGACGTATGCTTGGAGTACAGCTCGTTAAGTGCATCCCAAACCCGAACGATCTGTTTCGTGTGAATCGTTATGTCCTTTGCTTGCCCACTGTATCCACCAGAAGGCTGGTGAATCATGATAGTTGCATTAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

mRNA sequence

ATGATGCTGAAGATTTATGTGATGGAAAAAGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

Coding sequence (CDS)

ATGATGCTGAAGATTTATGTGATGGAAAAAGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

Protein sequence

MMLKIYVMEKVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKMQALRNRWRQEGEGNISFLDPLSALSFCDFFLTKSIVIGDEAIVSHPWHQQLEEEKPLKQPDPNRWY

Homology

[Close]

BLAST of CmoCh01G002600 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-41
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 62 AKTTKKIVLRLQCQGCKHVSQHPIK 86

[Close]

BLAST of CmoCh01G002600 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-38
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62 AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of CmoCh01G002600 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 141.4 bits (355), Expect = 9.3e-33
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKK+VLRL+C  CK+  Q  +K
Sbjct: 62 AKTTKKVVLRLECSVCKYKMQMTLK 86

[Close]

BLAST of CmoCh01G002600 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKK+VLRL+C  CK   Q A+K
Sbjct: 62 AKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of CmoCh01G002600 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKK+VLRL+C  CK   Q A+K
Sbjct: 62 AKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of CmoCh01G002600 vs. ExPASy TrEMBL
Match: A0A0V0GWD2 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 9.6e-41
Identity = 98/141 (69.50%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 11  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 39  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 98

Query: 71  AKTTKKIVLRLQCQGCKHVSQHAIK-MQALRNRWRQEGEGNISF-LDPLSALSF--CDFF 130
           AKTTKKIVLRLQCQGCKHVSQH IK  +       ++G+G   F ++ +S LS   C FF
Sbjct: 99  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLFXVEMVSFLSVXCCPFF 158

Query: 131 -----LTKSIVIGDEAIVSHP 143
                 T+ ++  DE ++S P
Sbjct: 159 SSDVSSTECLLFDDEQLMSVP 179

[Close]

BLAST of CmoCh01G002600 vs. ExPASy TrEMBL
Match: A0A0D2S9Q7 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G070100 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.1e-40
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 11  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 30  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 89

Query: 71  AKTTKKIVLRLQCQGCKHVSQHAIKMQAL 100
           AKTTKKIVLRLQCQGCKHVSQH IK+QAL
Sbjct: 90  AKTTKKIVLRLQCQGCKHVSQHPIKVQAL 118

[Close]

BLAST of CmoCh01G002600 vs. ExPASy TrEMBL
Match: A0A0D2TMG0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G133600 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.1e-40
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 11  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 69  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 128

Query: 71  AKTTKKIVLRLQCQGCKHVSQHAIKMQAL 100
           AKTTKKIVLRLQCQGCKHVSQH IK+QAL
Sbjct: 129 AKTTKKIVLRLQCQGCKHVSQHPIKVQAL 157

[Close]

BLAST of CmoCh01G002600 vs. ExPASy TrEMBL
Match: A0A0D2RJ15 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G210700 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.8e-40
Identity = 92/128 (71.88%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 11  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71  AKTTKKIVLRLQCQGCKHVSQHAIKMQA--LRNRWRQEGEGNISFLDPLSALSFC-DFFL 130
           AKTTKKIVLRLQCQGCKHVSQH IK+ A  LR    + G+ ++ F   +  +  C  +F+
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKVGASTLRLVETRRGKEHLCFKHVIHGILLCLLYFI 121

Query: 131 TKSIVIGD 136
             S+ + D
Sbjct: 122 WSSLNLQD 129

[Close]

BLAST of CmoCh01G002600 vs. ExPASy TrEMBL
Match: A0A2P5WGA8 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30548 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.8e-40
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 10  KVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           KVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 11  KVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 70

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKMQAL 100
           KAKTTKKIVLRLQCQGCKHVSQH IK+ AL
Sbjct: 71  KAKTTKKIVLRLQCQGCKHVSQHPIKVNAL 100

[Close]

BLAST of CmoCh01G002600 vs. NCBI nr
Match: KJB76838.1 (hypothetical protein B456_012G133600 [Gossypium raimondii])

HSP 1 Score: 175.3 bits (443), Expect = 4.4e-40
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 11  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 69  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 128

Query: 71  AKTTKKIVLRLQCQGCKHVSQHAIKMQAL 100
           AKTTKKIVLRLQCQGCKHVSQH IK+QAL
Sbjct: 129 AKTTKKIVLRLQCQGCKHVSQHPIKVQAL 157

[Close]

BLAST of CmoCh01G002600 vs. NCBI nr
Match: KJB79862.1 (hypothetical protein B456_013G070100 [Gossypium raimondii])

HSP 1 Score: 175.3 bits (443), Expect = 4.4e-40
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 11  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 30  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 89

Query: 71  AKTTKKIVLRLQCQGCKHVSQHAIKMQAL 100
           AKTTKKIVLRLQCQGCKHVSQH IK+QAL
Sbjct: 90  AKTTKKIVLRLQCQGCKHVSQHPIKVQAL 118

[Close]

BLAST of CmoCh01G002600 vs. NCBI nr
Match: KJB31844.1 (hypothetical protein B456_005G210700 [Gossypium raimondii])

HSP 1 Score: 174.9 bits (442), Expect = 5.8e-40
Identity = 92/128 (71.88%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 11  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71  AKTTKKIVLRLQCQGCKHVSQHAIKMQA--LRNRWRQEGEGNISFLDPLSALSFC-DFFL 130
           AKTTKKIVLRLQCQGCKHVSQH IK+ A  LR    + G+ ++ F   +  +  C  +F+
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKVGASTLRLVETRRGKEHLCFKHVIHGILLCLLYFI 121

Query: 131 TKSIVIGD 136
             S+ + D
Sbjct: 122 WSSLNLQD 129

[Close]

BLAST of CmoCh01G002600 vs. NCBI nr
Match: PPR90132.1 (hypothetical protein GOBAR_AA30548 [Gossypium barbadense])

HSP 1 Score: 174.9 bits (442), Expect = 5.8e-40
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 10  KVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           KVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 11  KVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 70

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKMQAL 100
           KAKTTKKIVLRLQCQGCKHVSQH IK+ AL
Sbjct: 71  KAKTTKKIVLRLQCQGCKHVSQHPIKVNAL 100

[Close]

BLAST of CmoCh01G002600 vs. NCBI nr
Match: KCW65063.1 (hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis] >KJB49985.1 hypothetical protein B456_008G148400 [Gossypium raimondii] >CAA2977523.1 60S ribosomal L44 [Olea europaea subsp. europaea])

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-39
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIKMQA 99
          AKTTKKIVLRLQCQGCKHVSQH IK+QA
Sbjct: 62 AKTTKKIVLRLQCQGCKHVSQHPIKVQA 89

[Close]

BLAST of CmoCh01G002600 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62 AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of CmoCh01G002600 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62 AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of CmoCh01G002600 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 11 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 70
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 71 AKTTKKIVLRLQCQGCKHVSQHAIK 96
          AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62 AKTTKKIVLRLQCQSCKHFSQRPIK 86

The following BLAST results are available for this feature:

BLAST of CmoCh01G002600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	2.4e-41	97.65	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	1.9e-38	91.76	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	9.3e-33	80.00	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	1.2e-32	80.00	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	1.2e-32	80.00	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of CmoCh01G002600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0V0GWD2	9.6e-41	69.50	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]
A0A0D2S9Q7	2.1e-40	96.63	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G070100 PE=3 ...	[more]
A0A0D2TMG0	2.1e-40	96.63	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G133600 PE=3 ...	[more]
A0A0D2RJ15	2.8e-40	71.88	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G210700 PE=3 ...	[more]
A0A2P5WGA8	2.8e-40	95.56	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30548 PE=3 SV...	[more]

BLAST of CmoCh01G002600 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB76838.1	4.4e-40	96.63	hypothetical protein B456_012G133600 [Gossypium raimondii]	[more]
KJB79862.1	4.4e-40	96.63	hypothetical protein B456_013G070100 [Gossypium raimondii]	[more]
KJB31844.1	5.8e-40	71.88	hypothetical protein B456_005G210700 [Gossypium raimondii]	[more]
PPR90132.1	5.8e-40	95.56	hypothetical protein GOBAR_AA30548 [Gossypium barbadense]	[more]
KCW65063.1	1.3e-39	96.59	hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis] >KJB49985.1 hypothetica...	[more]

BLAST of CmoCh01G002600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	1.4e-39	91.76	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	1.4e-39	91.76	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	1.4e-39	91.76	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.80		coord: 10..107 e-value: 6.4E-41 score: 141.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..66
None	No IPR available	PANTHER	PTHR10369:SF40	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 11..101
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 28..95 e-value: 5.6E-29 score: 100.4
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 11..101
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 72..83
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 11..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002600.1	CmoCh01G002600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome