CmoCh01G002480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein
Location	Cmo_Chr01: 1120952 .. 1124145 (-)
RNA-Seq Expression	CmoCh01G002480
Synteny	CmoCh01G002480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACAAATGTGTTGTGACCATTTCCACTTCTTATCATCTCCACATTCCATGGATAGAGAGACCCATTTCCAAATCCAAATCAAAATCCGAAGCCTCTGCATGAGGTAGAAGAAGAATCTCCCAGCTTCACTCTCCATCAATGGCGGCCTGCACTTCCACATCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTCACTTCCTCCATCGTCTCTTTCAATGGGAAATCCCGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTCTTATGTAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGAAGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCTGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCAAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGGTATGTTTCAAAATCTTGTAAAACTTTGGTTGTTACGATTGGACTGTGGATTGTGTTGTGTTTTTTGGGTTGTTCTTGTAGGGGCTTGTTTTCGAGCTTAAAAATGGAGGTTGTTTTACAATGGTTGTGGAAGATTTTTGAGTGTTTTGATTGGTAGATAGGATGTCAAATGTGAACTTGTTTACATATTTTGTTGTCTTTTCATGTCTGAAATCAACTTGTTGTGTGATATGTCAGAGGAGATCCAAGAGATTCTTGGAGATTCAAAAACTAAGGGAAAACAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTGAGTTTTTTTTGTTTATAAATCCTGATGTCTTTATTGCTAAGGGAAGTTATGAAGAATATGCTTATCATGAGGTTATTTTGTTTGCATACTTTGTTGTAGGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTATATACTTTTAATATTTAAGCAGCCCTCTCTTTAATCGATACACAGTCGTCTATAGTAGCGTTTCTTATGCTATATGTTTGAAATTTCTATCGAAATCCACCCAGTTGAGTCTTTGCTGTGGCTAAGGCTTTGTTTGAGAGTTGTTGGTGAAACTGTTTTATGATTTTTAGAACGAAGCAAGCACAAACATGTTTCAATAACTTTTACGTCGATGACTTGAAGTTCTTATGCATCTTGATTCCTTTTTCTTGAGTGGCTATGTGAGACCTCACATCGGTTGGAGAGGGGAACAAAACATTACTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATACGTTTTAAAACCTTGAGGGGCAGCTCGGAAGGGAAAAGCCAAAGAGGACAATATTTGCTAGCGGTAGGCTTGGGCTGCCAGACACCAGGCGATGTGCTAGTGAGGACGCTGGCCCCCAAGGGGGTGGATTGTGAGATCCCACAACGGAGAACGAAACATTTCTTATAAGAGTGGAAACCTCTTCCTAATTGAGGGAAAGCCTAGAAGGGAAAGCCCAAAGAGGACAATACATACTAGCGGTGGGCTTGGGCTTGGGCTTGGGGGCTGTTACAGGTTATTCCTACAAAAATCTTTACTGTTTAGTGGGCGTGTAAAAAGTTGAAATAAACATACAGGTGAGAAATTCGATGAAGCGAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATTAAAGGAGGATTTATGGATTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTATTTCTATTGCTCTAACTAGATTGCTTCAATTATTTCTCGAGATTTTTATGTTTCTCACAGCATATAAATTGTTTTCTTAAACAAGTTGCATAACTTTAAACAGTTAAAAGGTGAATTGAAGGTTTACAATTACGCGGATGATCCTAGAAGATAAGAGACATGAACACAAACTTAGCGTAGTAGCTACCCTGGGTTTATAGATCGATTTTTGGTCGTAGATATATTTCCAGATTTTTGCATATCAAAGTTATCTTATAATGACTGAAGCCAAAACTCTAAACCAGATATAGTCTATATATGCAAGGGTATTACCATCGGGTGAATGCCGATACCTGCATTACTATGATGATGTAGTTGAGTTGAGTCTCCTCTTCTCGTTTCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGCACCGTAGCAACCAATCTGCCTCAGGTATCAATGATTTTTGTTTGGTATCTGCAGTGCATCAATTAGAAAAGAAATACAAGACTTTACTTAATCCATCTAGCAACCTTGATTTCAGGCAATTGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACCTACCATTTGGGAAAGCCGACTTCAGCGAAGAAGACCTTCTTGTAAACTTGCTCGCAGCCATAGTATGCTCTTCCCTTCTTATCTCCATAGCTGTTGGTCTCCAAAAATGTGTCTAATTCATGTTATTTTCTTTGAACTCTTGACAGAAATCAGTAGAAACCAATAAACCGACAGGTGCCAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGGTTAAATATAAGGGAGATGCTCGACTTCAAGCTTCCCTCAACAGCTTGACAAATAACAAACCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTATGGGGGATCCACTACAATATAATGATGCCCAAATGTGAGCTGCACTGGAATGAAGATGATTGAAGAAACTGGGATGAATAATGAGAAGATATCAGAAAATTATGATCACAGAAACAAGCATACTGCATAGTCTTCTATACTGACTGAATCTCTCTGTATTAATGGTGTTAAGTTCTTATTGATCTTTGATTAACCTCTTGGGTTTTAGGGAAAAAAATGATGAATGTACTGAAATGTAATGACCAGTTGATGACCTTTTATTCTGTTCCTGTTTAGGGATATTCGTCCTTTTTATGAAAACGTGGAATCATTGCTCCTTCTAAGCAATCGTATTCTCAAACTTCTCATTGTGTTATCTCTGG

mRNA sequence

CAAACAAATGTGTTGTGACCATTTCCACTTCTTATCATCTCCACATTCCATGGATAGAGAGACCCATTTCCAAATCCAAATCAAAATCCGAAGCCTCTGCATGAGGTAGAAGAAGAATCTCCCAGCTTCACTCTCCATCAATGGCGGCCTGCACTTCCACATCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTCACTTCCTCCATCGTCTCTTTCAATGGGAAATCCCGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTCTTATGTAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGAAGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCTGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCAAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGAGGAGATCCAAGAGATTCTTGGAGATTCAAAAACTAAGGGAAAACAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCGAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATTAAAGGAGGATTTATGGATTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGCACCGTAGCAACCAATCTGCCTCAGGCAATTGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACCTACCATTTGGGAAAGCCGACTTCAGCGAAGAAGACCTTCTTGTAAACTTGCTCGCAGCCATAAAATCAGTAGAAACCAATAAACCGACAGGTGCCAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGGTTAAATATAAGGGAGATGCTCGACTTCAAGCTTCCCTCAACAGCTTGACAAATAACAAACCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTATGGGGGATCCACTACAATATAATGATGCCCAAATGTGAGCTGCACTGGAATGAAGATGATTGAAGAAACTGGGATGAATAATGAGAAGATATCAGAAAATTATGATCACAGAAACAAGCATACTGCATAGTCTTCTATACTGACTGAATCTCTCTGTATTAATGGTGTTAAGTTCTTATTGATCTTTGATTAACCTCTTGGGTTTTAGGGAAAAAAATGATGAATGTACTGAAATGTAATGACCAGTTGATGACCTTTTATTCTGTTCCTGTTTAGGGATATTCGTCCTTTTTATGAAAACGTGGAATCATTGCTCCTTCTAAGCAATCGTATTCTCAAACTTCTCATTGTGTTATCTCTGG

Coding sequence (CDS)

ATGGCGGCCTGCACTTCCACATCTCCTTCTTCCCTAATGCTCACTTACGCTTCTTCTTCTGTTTACCCCCAAGATCTCACTTCCTCCATCGTCTCTTTCAATGGGAAATCCCGATTTTCCACCATCAAATCCTTCTCCTCCTGCCATTTCTTATGTAGGCCAAGGAGATCGGCCGATTGGATTTGTCTTAATTTCCAGAGAAGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGAATGTCGCTGAAGCGGAGGCGGAGGCGGAGGAGGGTGTCGCCGTGGGGGGAACGGATACCGTTGCTGCGCCTAAACCAAAGAAGGGGAAAGCCGCGTTGCCTCTTAAAAGAGATAGGAGGAGATCCAAGAGATTCTTGGAGATTCAAAAACTAAGGGAAAACAAAAAAGAGTATGAGATCAAGACAGCAATATCTCTTCTCAAGGAAATGGCTAGCACAAAATTTGTAGAAACAGCAGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTAAGAGCAACCGTAAATCTGCCTAAAGGAACAGGGCAAACTGTAAGAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCGAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATTAAAGGAGGATTTATGGATTTTGACAAACTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGAGGGCTCATGCCGAATCCAAAAGCCGGCACCGTAGCAACCAATCTGCCTCAGGCAATTGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGGATCGTTCACCTACCATTTGGGAAAGCCGACTTCAGCGAAGAAGACCTTCTTGTAAACTTGCTCGCAGCCATAAAATCAGTAGAAACCAATAAACCGACAGGTGCCAAAGGTGTATACTGGAAAAGCGCACACATATGCTCGTCGATGGGACCTTCAATTCGGTTAAATATAAGGGAGATGCTCGACTTCAAGCTTCCCTCAACAGCTTGA

Protein sequence

MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADWICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA

Homology

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BLAST of CmoCh01G002480 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.5e-123
Identity = 244/355 (68.73%), Postives = 280/355 (78.87%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDLT +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
            C    R + H  IV+A+AAEA++     + EE +    T  +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS 356
           EEDLL+N LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P+
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344

[Close]

BLAST of CmoCh01G002480 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.3e-119
Identity = 239/358 (66.76%), Postives = 278/358 (77.65%), Query Frame = 0


Query: 6   STSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLC--RPRRSADWICL 65
           + +P SL L YASSS   Q   S    F        + + S C      R R    W+  
Sbjct: 3   TAAPPSLSLCYASSSFQYQQDPSFQTHFK-----PLLLNSSLCRLTLNQRERSCLKWVDF 62

Query: 66  NFQRRARHHV---IVAALAAEANVAEAEAEAEEGVAVGGTDTVAAP-KPKKGKAALPLKR 125
             Q+++   V   ++AA+AAEA VA+ E E  E    GG  T+ +P KPKKGKAALPLK 
Sbjct: 63  TSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGES---GGVATLPSPTKPKKGKAALPLKS 122

Query: 126 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 185
           DR RSKRFLEIQKLRE K+EY++KTA+SL+K+M+STKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 123 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLR 182

Query: 186 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 245
           ATV+LPKGTG+TV++AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DM
Sbjct: 183 ATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDM 242

Query: 246 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 305
           M KVASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F
Sbjct: 243 MAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF 302

Query: 306 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
            EEDLL+NL A IKSVETNKPTGAKGVYWKSAHI SSMGPSIRLNIREMLD+K PS A
Sbjct: 303 EEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of CmoCh01G002480 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.2e-78
Identity = 149/233 (63.95%), Postives = 186/233 (79.83%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  + Q   EN K YE   A++LLKE+A+ KF ETAEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTG+TVRVAV+T+GEK  EA NAGAD+VG E+LIE+I  G MDF+ LIA+PDMM
Sbjct: 63  TVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVA LG+ LGPRGLMP+PK GTV T+L  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFS 182

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL 354
            EDLLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D KL
Sbjct: 183 AEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of CmoCh01G002480 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-75
Identity = 143/237 (60.34%), Postives = 185/237 (78.06%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+SLLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ VRVAV+ +GEK  EA NAGAD+ G E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
            EDLLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL   A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of CmoCh01G002480 vs. ExPASy Swiss-Prot
Match: Q8YLJ7 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.5e-75
Identity = 143/237 (60.34%), Postives = 185/237 (78.06%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+ LLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ VRVAV+ +GEK  EA NAGAD+VG E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
            EDLLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL   A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of CmoCh01G002480 vs. ExPASy TrEMBL
Match: A0A6J1G9U2 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 1.8e-193
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of CmoCh01G002480 vs. ExPASy TrEMBL
Match: A0A6J1KEE5 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 5.9e-192
Identity = 355/357 (99.44%), Postives = 355/357 (99.44%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

[Close]

BLAST of CmoCh01G002480 vs. ExPASy TrEMBL
Match: A0A6J1DFM3 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 8.0e-173
Identity = 327/361 (90.58%), Postives = 338/361 (93.63%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MA CTSTSPSSLMLT ASSSV+PQDL SSIVSF GK +FSTIK+FSS HFLCRPRRS DW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  ICLNFQRRARHHVIVAALAAE----ANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALP 120
           I L+FQRRARHHVIVAALAAE        EAEA+ EEG+  G   TVAAPKPKKGKAALP
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLD-GAAATVAAPKPKKGKAALP 120

Query: 121 LKRDRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180
           LKRDRRRSKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180

Query: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300
           PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK
Sbjct: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300

Query: 301 ADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPST 358
           ADFSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKLPS+
Sbjct: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360

[Close]

BLAST of CmoCh01G002480 vs. ExPASy TrEMBL
Match: A0A5D3BLK6 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00110 PE=3 SV=1)

HSP 1 Score: 602.8 bits (1553), Expect = 9.2e-169
Identity = 320/358 (89.39%), Postives = 335/358 (93.58%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSV-YPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSAD 60
           MAACTST PSSLMLT ASSSV  PQDL SSIVSF GK +  TIKSFSS +FLCR RRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKR 120
           W+ LNFQRRAR HVIVAALAAEANVAE EAE EE VA   T T  APKPKKGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPS+A
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of CmoCh01G002480 vs. ExPASy TrEMBL
Match: A0A1S3CFH3 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1)

HSP 1 Score: 602.8 bits (1553), Expect = 9.2e-169
Identity = 320/358 (89.39%), Postives = 335/358 (93.58%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSV-YPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSAD 60
           MAACTST PSSLMLT ASSSV  PQDL SSIVSF GK +  TIKSFSS +FLCR RRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKR 120
           W+ LNFQRRAR HVIVAALAAEANVAE EAE EE VA   T T  APKPKKGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPS+A
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of CmoCh01G002480 vs. NCBI nr
Match: XP_022948661.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 684.9 bits (1766), Expect = 3.8e-193
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of CmoCh01G002480 vs. NCBI nr
Match: XP_022998464.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 679.9 bits (1753), Expect = 1.2e-191
Identity = 355/357 (99.44%), Postives = 355/357 (99.44%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL STA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

[Close]

BLAST of CmoCh01G002480 vs. NCBI nr
Match: KAG7036595.1 (50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 679.1 bits (1751), Expect = 2.1e-191
Identity = 354/357 (99.16%), Postives = 355/357 (99.44%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCH LCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of CmoCh01G002480 vs. NCBI nr
Match: XP_023525415.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 676.8 bits (1745), Expect = 1.0e-190
Identity = 352/357 (98.60%), Postives = 354/357 (99.16%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAACTSTSPSSLMLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
           ICLNFQRRARHHVIVAALAAEANVAEA+ EAEEGVAVGGTD VAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEADTEAEEGVAVGGTDAVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of CmoCh01G002480 vs. NCBI nr
Match: KAG6606890.1 (50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 659.4 bits (1700), Expect = 1.7e-185
Identity = 342/345 (99.13%), Postives = 343/345 (99.42%), Query Frame = 0


Query: 13  MLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADWICLNFQRRARHH 72
           MLTYASSSVYPQDL SSIVSFNGKSRFSTIKSFSSCH LCRPRRSADWICLNFQRRARHH
Sbjct: 1   MLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADWICLNFQRRARHH 60

Query: 73  VIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQK 132
           VIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQK
Sbjct: 61  VIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRDRRRSKRFLEIQK 120

Query: 133 LRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTV 192
           LRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTV
Sbjct: 121 LRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTV 180

Query: 193 RVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGP 252
           RVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMMPKVASLGKLLGP
Sbjct: 181 RVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGP 240

Query: 253 RGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAI 312
           RGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAI
Sbjct: 241 RGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAI 300

Query: 313 KSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 358
           KSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA
Sbjct: 301 KSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 345

[Close]

BLAST of CmoCh01G002480 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 444.1 bits (1141), Expect = 1.0e-124
Identity = 244/355 (68.73%), Postives = 280/355 (78.87%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDLT +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
            C    R + H  IV+A+AAEA++     + EE +    T  +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS 356
           EEDLL+N LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P+
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344

[Close]

BLAST of CmoCh01G002480 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-81
Identity = 180/296 (60.81%), Postives = 211/296 (71.28%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60
           MAAC   + SSLML YA++S   QDLT +   F+  S      SF     L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRDR 60

Query: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120
            C    R + H  IV+A+AAEA++     + EE +    T  +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEY++ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 297
            KVA LGK+LGPRGLMPNPKAGTV  N+PQ+    ++GK+     K G+     GK
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

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BLAST of CmoCh01G002480 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-39
Identity = 89/224 (39.73%), Postives = 137/224 (61.16%), Query Frame = 0


Query: 132 KLRENKKE-YEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 191
           +L+  KK  +++  AI  +K  A  KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 192 TVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQI-KGGFMDFDKLIASPDMMPKVASLGKL 251
            V+VA   +G   ++AK AGAD+VGG +LIE+I K G +DFD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 252 LGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLL 311
           L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSEE L  N+ 
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358

Query: 312 AAIKSVETNKPTGAKGV-----YWKSAHICSSMGPSIRLNIREM 349
           A + ++   KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 AFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of CmoCh01G002480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY66	1.5e-123	68.73	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
Q9LE95	1.3e-119	66.76	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
B0JNQ5	3.2e-78	63.95	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
Q3MA18	1.1e-75	60.34	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YLJ7	2.5e-75	60.34	50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of CmoCh01G002480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9U2	1.8e-193	100.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1	[more]
A0A6J1KEE5	5.9e-192	99.44	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1	[more]
A0A6J1DFM3	8.0e-173	90.58	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1	[more]
A0A5D3BLK6	9.2e-169	89.39	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00...	[more]
A0A1S3CFH3	9.2e-169	89.39	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1	[more]

BLAST of CmoCh01G002480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948661.1	3.8e-193	100.00	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022998464.1	1.2e-191	99.44	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
KAG7036595.1	2.1e-191	99.16	50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_023525415.1	1.0e-190	98.60	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6606890.1	1.7e-185	99.13	50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of CmoCh01G002480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	1.0e-124	68.73	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	1.9e-81	60.81	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	2.3e-39	39.73	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 187..278 e-value: 1.5E-82 score: 278.1
None	No IPR available	GENE3D	3.30.190.20		coord: 140..343 e-value: 1.5E-82 score: 278.1
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 137..350
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 137..350
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 123..347 e-value: 5.8E-95 score: 315.0
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 121..348 score: 39.691971
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 149..339 e-value: 2.6E-47 score: 161.2
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 142..343 e-value: 3.2702E-74 score: 226.682
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 240..258
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 126..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002480.1	CmoCh01G002480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding