Cmc11g0291001 (gene) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATCTTGCTAATAGCACAAGACCAGATATAGCATTTTCAGTAAATTTGTTATCAAGATATAGTTCTTTTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCAAGGGATAATTGATATGGGTTTGTTATATTCAAATACATCAAACTTTAATTTAGTTGGTTATGCGGATGCTGGATATTTACCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGAAAACCATGACGGCCACTTCATCAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGA ATGTATCTTGCTAATAGCACAAGACCAGATATAGCATTTTCAGTAAATTTGTTATCAAGATATAGTTCTTTTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCAAGGGATAATTGATATGGGTTTGTTATATTCAAATACATCAAACTTTAATTTAGTTGGTTATGCGGATGCTGGATATTTACCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGAAAACCATGACGGCCACTTCATCAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGA ATGTATCTTGCTAATAGCACAAGACCAGATATAGCATTTTCAGTAAATTTGTTATCAAGATATAGTTCTTTTCCAACAAAAAGACATTGGAATGAAGTTAAGCATGTACTTCGTTATCTTCAAGGGATAATTGATATGGGTTTGTTATATTCAAATACATCAAACTTTAATTTAGTTGGTTATGCGGATGCTGGATATTTACCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGGTCTGTAAAGAAAACCATGACGGCCACTTCATCAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGA MYLANSTRPDIAFSVNLLSRYSSFPTKRHWNEVKHVLRYLQGIIDMGLLYSNTSNFNLVGYADAGYLPDPHKARSQTGYLFTCGGTVISWRSVKKTMTATSSIMQKFLQFMKLVENVYG Homology
BLAST of Cmc11g0291001 vs. NCBI nr
Match: KAA0038947.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK11197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 187.6 bits (475), Expect = 6.3e-44 Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 0
BLAST of Cmc11g0291001 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42 Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 0
BLAST of Cmc11g0291001 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]) HSP 1 Score: 174.9 bits (442), Expect = 4.2e-40 Identity = 85/102 (83.33%), Postives = 90/102 (88.24%), Query Frame = 0
BLAST of Cmc11g0291001 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]) HSP 1 Score: 171.0 bits (432), Expect = 6.1e-39 Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0
BLAST of Cmc11g0291001 vs. NCBI nr
Match: CAA7029940.1 (unnamed protein product [Microthlaspi erraticum]) HSP 1 Score: 171.0 bits (432), Expect = 6.1e-39 Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18 Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 4.1e-14 Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 9.2e-14 Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13 Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.3e-11 Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy TrEMBL
Match: A0A5D3CGU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00370 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 3.1e-44 Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 5.8e-43 Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40 Identity = 85/102 (83.33%), Postives = 90/102 (88.24%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy TrEMBL
Match: A0A2N9HZ23 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44862 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 6.0e-40 Identity = 82/102 (80.39%), Postives = 88/102 (86.27%), Query Frame = 0
BLAST of Cmc11g0291001 vs. ExPASy TrEMBL
Match: A0A2N9J4G7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59221 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39 Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = 0
BLAST of Cmc11g0291001 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 72.0 bits (175), Expect = 3.6e-13 Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 0
BLAST of Cmc11g0291001 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 62.4 bits (150), Expect = 2.9e-10 Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 0
BLAST of Cmc11g0291001 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 61.2 bits (147), Expect = 6.4e-10 Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
Relationships
The following mRNA feature(s) are a part of this gene:
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