Cmc11g0289051 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0289051
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 3517373 .. 3518668 (-)
RNA-Seq Expression	Cmc11g0289051
Synteny	Cmc11g0289051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAAGGTAAGGTAGTAGCTTATGCTTCGCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACAGGATTTAGAGTTGGCAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGAATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCCAAGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAATAACAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGATTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAAAGGCGCCTCTGTGTGCCATCAGGTAGTACGGTTAAAACAGAATTAGTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCACGTAGTATGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGAAACTAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTTATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACAGACTTACCAAATCAGCGCACTTCGTTTCGGGTAAATCCACTTATACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTTCAAATTCTGGAAGGGTTTGCAAACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACCAACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAAGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTGCATTTGATGGAATTTTCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTATGGCAAATGTTGTAGATCCCCTGTTTGCTGGGGTGGGGTGGGGTGGGTGAGCAGAGATTGA

mRNA sequence

ATGCAGCAAGGTAAGGTAGTAGCTTATGCTTCGCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACAGGATTTAGAGTTGGCAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGAATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCCAAGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAATAACAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGATTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAAAGGCGCCTCTGTGTGCCATCAGGTAGTACGGTTAAAACAGAATTAGTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCACGTAGTATGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGAAACTAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTTATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACAGACTTACCAAATCAGCGCACTTCGTTTCGGGTAAATCCACTTATACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTTCAAATTCTGGAAGGGTTTGCAAACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACCAACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAAGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTGCATTTGATGGAATTTTCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTATGGCAAATGTTGTAGATCCCCTGTTTGCTGGGGTGGGGTGGGGTGGGTGAGCAGAGATTGA

Coding sequence (CDS)

ATGCAGCAAGGTAAGGTAGTAGCTTATGCTTCGCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACAGGATTTAGAGTTGGCAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGAATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCCAAGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAATAACAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGATTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAAAGGCGCCTCTGTGTGCCATCAGGTAGTACGGTTAAAACAGAATTAGTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCACGTAGTATGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGAAACTAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTTATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACAGACTTACCAAATCAGCGCACTTCGTTTCGGGTAAATCCACTTATACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTTCAAATTCTGGAAGGGTTTGCAAACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACCAACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAAGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTGCATTTGATGGAATTTTCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTATGGCAAATGTTGTAGATCCCCTGTTTGCTGGGGTGGGGTGGGGTGGGTGAGCAGAGATTGA

Protein sequence

MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKCLVCQKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTAFHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYGKCCRSPVCWGGVGWVSRD

Homology

[Close]

BLAST of Cmc11g0289051 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 822.0 bits (2122), Expect = 2.4e-234
Identity = 405/433 (93.53%), Postives = 414/433 (95.61%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 831  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 890

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 891  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 950

Query: 121  AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
            AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFS+SSDGGL
Sbjct: 951  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 1010

Query: 181  LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
            LFERRLCVPS S VKTEL+SEAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 1011 LFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 1070

Query: 241  LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
            LVC       QK AGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 1071 LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 1130

Query: 301  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
            FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 1131 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 1190

Query: 361  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
            FHPQT+GQTERLNQVLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 1191 FHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG 1250

Query: 421  KCCRSPVCWGGVG 427
            +CCRSPVCWG VG
Sbjct: 1251 RCCRSPVCWGEVG 1263

[Close]

BLAST of Cmc11g0289051 vs. NCBI nr
Match: KAA0051744.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 817.0 bits (2109), Expect = 7.7e-233
Identity = 404/433 (93.30%), Postives = 413/433 (95.38%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT++KSLKYFF
Sbjct: 711  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDYKSLKYFF 770

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 771  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 830

Query: 121  AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
            AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQA EFS+SSDGGL
Sbjct: 831  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGL 890

Query: 181  LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
            LFERRLCVPS S VKTEL+SEAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 891  LFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 950

Query: 241  LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
            LVC       QK AGLLQPLSIPEWKWENVSMDFITGL RTLRGFTVIWVVVDRLTKSAH
Sbjct: 951  LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLSRTLRGFTVIWVVVDRLTKSAH 1010

Query: 301  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
            FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDF TA
Sbjct: 1011 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFITA 1070

Query: 361  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
            FHPQT+GQTERLNQVLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 1071 FHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG 1130

Query: 421  KCCRSPVCWGGVG 427
            KCCRSPVCWG VG
Sbjct: 1131 KCCRSPVCWGEVG 1143

[Close]

BLAST of Cmc11g0289051 vs. NCBI nr
Match: KAA0051357.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 817.0 bits (2109), Expect = 7.7e-233
Identity = 403/433 (93.07%), Postives = 412/433 (95.15%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 874  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 933

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 934  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 993

Query: 121  AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
            AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQA+EFS+SSDGGL
Sbjct: 994  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGL 1053

Query: 181  LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
             FE RLCVPS S VKTEL+ EAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 1054 SFEGRLCVPSDSAVKTELLFEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 1113

Query: 241  LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
            LVC       QK AGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 1114 LVCQQVKEPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 1173

Query: 301  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
            FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 1174 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 1233

Query: 361  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
            FHPQ +GQTERLNQVLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 1234 FHPQADGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG 1293

Query: 421  KCCRSPVCWGGVG 427
            KCCRSPVCWG VG
Sbjct: 1294 KCCRSPVCWGEVG 1306

[Close]

BLAST of Cmc11g0289051 vs. NCBI nr
Match: KAA0035938.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 816.6 bits (2108), Expect = 1.0e-232
Identity = 401/433 (92.61%), Postives = 412/433 (95.15%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 191 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 250

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHP KANVV DALSRKVSHSAALITRQAPLHRDLER
Sbjct: 251 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVVDALSRKVSHSAALITRQAPLHRDLER 310

Query: 121 AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
           AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFS+SSDGGL
Sbjct: 311 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 370

Query: 181 LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
           LFE RLCVPS S +KTEL++EAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 371 LFESRLCVPSDSAIKTELLTEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 430

Query: 241 LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
           LVC       QK AGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 431 LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 490

Query: 301 FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
           FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 491 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 550

Query: 361 FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
           FHPQT+GQTERLNQVLEDMLRACALEFPGSWD+HLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 551 FHPQTDGQTERLNQVLEDMLRACALEFPGSWDAHLHLMEFAYNNSYQATIGMAPFEALYG 610

Query: 421 KCCRSPVCWGGVG 427
           KCCRSPVCWG VG
Sbjct: 611 KCCRSPVCWGEVG 623

[Close]

BLAST of Cmc11g0289051 vs. NCBI nr
Match: KAA0057672.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 816.6 bits (2108), Expect = 1.0e-232
Identity = 400/433 (92.38%), Postives = 413/433 (95.38%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 402 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 461

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 462 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 521

Query: 121 AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
           AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQA+EFS+SSDGGL
Sbjct: 522 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGL 581

Query: 181 LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
           LFERRLCVPS S VKTEL++EAHSSPFSMHP S KMYQDLKR+YWWRNMKREVAEFVSKC
Sbjct: 582 LFERRLCVPSDSAVKTELLAEAHSSPFSMHPGSTKMYQDLKRIYWWRNMKREVAEFVSKC 641

Query: 241 LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
           LVC       QK AGLLQPLSIPEWKWENVSMDFI GLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 642 LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIAGLPRTLRGFTVIWVVVDRLTKSAH 701

Query: 301 FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
           FV GKSTYT SKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 702 FVPGKSTYTTSKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 761

Query: 361 FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
           FHPQT+GQTERLN+VLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALY 
Sbjct: 762 FHPQTDGQTERLNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD 821

Query: 421 KCCRSPVCWGGVG 427
           KCCRSP+CWG VG
Sbjct: 822 KCCRSPICWGEVG 834

[Close]

BLAST of Cmc11g0289051 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-54
Identity = 127/419 (30.31%), Postives = 212/419 (50.60%), Query Frame = 0


Query: 7    VAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYG--EKIQIFTNHKSLKYFFTQKE 66
            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T + 
Sbjct: 735  VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67   --LNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLERAE 126
               N R  RW   ++D++ EI Y P  AN +ADALSR       ++    P+ +D E   
Sbjct: 795  EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNS 854

Query: 127  IAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLF 186
            I          + Q+++    + +++   +ND  L+    L    + +E +I    GLL 
Sbjct: 855  INF--------VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLI 914

Query: 187  ERR--LCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 246
              +  + +P+ + +   ++ + H     +HP    +   + R + W+ +++++ E+V  C
Sbjct: 915  NSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNC 974

Query: 247  LVCQ-------KLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 306
              CQ       K  G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A 
Sbjct: 975  HTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAI 1034

Query: 307  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 366
             V    + TA + A+++   ++   G P  I++D D  FT + WK         + FS  
Sbjct: 1035 LVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLP 1094

Query: 367  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALY 413
            + PQT+GQTER NQ +E +LR      P +W  H+ L++ SYNN+  +   M PFE ++
Sbjct: 1095 YRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0289051 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-54
Identity = 127/419 (30.31%), Postives = 212/419 (50.60%), Query Frame = 0


Query: 7    VAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYG--EKIQIFTNHKSLKYFFTQKE 66
            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T + 
Sbjct: 735  VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67   --LNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLERAE 126
               N R  RW   ++D++ EI Y P  AN +ADALSR       ++    P+ +D E   
Sbjct: 795  EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNS 854

Query: 127  IAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLF 186
            I          + Q+++    + +++   +ND  L+    L    + +E +I    GLL 
Sbjct: 855  INF--------VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLI 914

Query: 187  ERR--LCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 246
              +  + +P+ + +   ++ + H     +HP    +   + R + W+ +++++ E+V  C
Sbjct: 915  NSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNC 974

Query: 247  LVCQ-------KLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 306
              CQ       K  G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A 
Sbjct: 975  HTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAI 1034

Query: 307  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 366
             V    + TA + A+++   ++   G P  I++D D  FT + WK         + FS  
Sbjct: 1035 LVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLP 1094

Query: 367  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALY 413
            + PQT+GQTER NQ +E +LR      P +W  H+ L++ SYNN+  +   M PFE ++
Sbjct: 1095 YRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0289051 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-54
Identity = 127/419 (30.31%), Postives = 212/419 (50.60%), Query Frame = 0


Query: 7    VAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYG--EKIQIFTNHKSLKYFFTQKE 66
            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T + 
Sbjct: 735  VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67   --LNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLERAE 126
               N R  RW   ++D++ EI Y P  AN +ADALSR       ++    P+ +D E   
Sbjct: 795  EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNS 854

Query: 127  IAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLF 186
            I          + Q+++    + +++   +ND  L+    L    + +E +I    GLL 
Sbjct: 855  INF--------VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLI 914

Query: 187  ERR--LCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 246
              +  + +P+ + +   ++ + H     +HP    +   + R + W+ +++++ E+V  C
Sbjct: 915  NSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNC 974

Query: 247  LVCQ-------KLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 306
              CQ       K  G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A 
Sbjct: 975  HTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAI 1034

Query: 307  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 366
             V    + TA + A+++   ++   G P  I++D D  FT + WK         + FS  
Sbjct: 1035 LVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLP 1094

Query: 367  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALY 413
            + PQT+GQTER NQ +E +LR      P +W  H+ L++ SYNN+  +   M PFE ++
Sbjct: 1095 YRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0289051 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-54
Identity = 127/419 (30.31%), Postives = 212/419 (50.60%), Query Frame = 0


Query: 7    VAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYG--EKIQIFTNHKSLKYFFTQKE 66
            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T + 
Sbjct: 735  VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67   --LNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLERAE 126
               N R  RW   ++D++ EI Y P  AN +ADALSR       ++    P+ +D E   
Sbjct: 795  EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNS 854

Query: 127  IAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLF 186
            I          + Q+++    + +++   +ND  L+    L    + +E +I    GLL 
Sbjct: 855  INF--------VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLI 914

Query: 187  ERR--LCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 246
              +  + +P+ + +   ++ + H     +HP    +   + R + W+ +++++ E+V  C
Sbjct: 915  NSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNC 974

Query: 247  LVCQ-------KLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 306
              CQ       K  G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A 
Sbjct: 975  HTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAI 1034

Query: 307  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 366
             V    + TA + A+++   ++   G P  I++D D  FT + WK         + FS  
Sbjct: 1035 LVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLP 1094

Query: 367  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALY 413
            + PQT+GQTER NQ +E +LR      P +W  H+ L++ SYNN+  +   M PFE ++
Sbjct: 1095 YRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0289051 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-54
Identity = 127/419 (30.31%), Postives = 212/419 (50.60%), Query Frame = 0


Query: 7    VAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYG--EKIQIFTNHKSLKYFFTQKE 66
            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I T+H++L    T + 
Sbjct: 735  VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67   --LNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLERAE 126
               N R  RW   ++D++ EI Y P  AN +ADALSR       ++    P+ +D E   
Sbjct: 795  EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNS 854

Query: 127  IAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLF 186
            I          + Q+++    + +++   +ND  L+    L    + +E +I    GLL 
Sbjct: 855  INF--------VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLI 914

Query: 187  ERR--LCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 246
              +  + +P+ + +   ++ + H     +HP    +   + R + W+ +++++ E+V  C
Sbjct: 915  NSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNC 974

Query: 247  LVCQ-------KLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 306
              CQ       K  G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A 
Sbjct: 975  HTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAI 1034

Query: 307  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 366
             V    + TA + A+++   ++   G P  I++D D  FT + WK         + FS  
Sbjct: 1035 LVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLP 1094

Query: 367  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALY 413
            + PQT+GQTER NQ +E +LR      P +W  H+ L++ SYNN+  +   M PFE ++
Sbjct: 1095 YRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc11g0289051 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 822.0 bits (2122), Expect = 1.2e-234
Identity = 405/433 (93.53%), Postives = 414/433 (95.61%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 831  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 890

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 891  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 950

Query: 121  AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
            AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFS+SSDGGL
Sbjct: 951  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 1010

Query: 181  LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
            LFERRLCVPS S VKTEL+SEAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 1011 LFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 1070

Query: 241  LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
            LVC       QK AGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 1071 LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 1130

Query: 301  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
            FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 1131 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 1190

Query: 361  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
            FHPQT+GQTERLNQVLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 1191 FHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG 1250

Query: 421  KCCRSPVCWGGVG 427
            +CCRSPVCWG VG
Sbjct: 1251 RCCRSPVCWGEVG 1263

[Close]

BLAST of Cmc11g0289051 vs. ExPASy TrEMBL
Match: A0A5A7UAA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00800 PE=4 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 3.7e-233
Identity = 403/433 (93.07%), Postives = 412/433 (95.15%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 874  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 933

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 934  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 993

Query: 121  AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
            AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQA+EFS+SSDGGL
Sbjct: 994  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGL 1053

Query: 181  LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
             FE RLCVPS S VKTEL+ EAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 1054 SFEGRLCVPSDSAVKTELLFEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 1113

Query: 241  LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
            LVC       QK AGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 1114 LVCQQVKEPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 1173

Query: 301  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
            FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 1174 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 1233

Query: 361  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
            FHPQ +GQTERLNQVLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 1234 FHPQADGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG 1293

Query: 421  KCCRSPVCWGGVG 427
            KCCRSPVCWG VG
Sbjct: 1294 KCCRSPVCWGEVG 1306

[Close]

BLAST of Cmc11g0289051 vs. ExPASy TrEMBL
Match: A0A5A7U8T5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001340 PE=4 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 3.7e-233
Identity = 404/433 (93.30%), Postives = 413/433 (95.38%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT++KSLKYFF
Sbjct: 711  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDYKSLKYFF 770

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 771  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 830

Query: 121  AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
            AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQA EFS+SSDGGL
Sbjct: 831  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGL 890

Query: 181  LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
            LFERRLCVPS S VKTEL+SEAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 891  LFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 950

Query: 241  LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
            LVC       QK AGLLQPLSIPEWKWENVSMDFITGL RTLRGFTVIWVVVDRLTKSAH
Sbjct: 951  LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLSRTLRGFTVIWVVVDRLTKSAH 1010

Query: 301  FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
            FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDF TA
Sbjct: 1011 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFITA 1070

Query: 361  FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
            FHPQT+GQTERLNQVLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 1071 FHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG 1130

Query: 421  KCCRSPVCWGGVG 427
            KCCRSPVCWG VG
Sbjct: 1131 KCCRSPVCWGEVG 1143

[Close]

BLAST of Cmc11g0289051 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 816.6 bits (2108), Expect = 4.9e-233
Identity = 401/433 (92.61%), Postives = 412/433 (95.15%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 191 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 250

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHP KANVV DALSRKVSHSAALITRQAPLHRDLER
Sbjct: 251 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVVDALSRKVSHSAALITRQAPLHRDLER 310

Query: 121 AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
           AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFS+SSDGGL
Sbjct: 311 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 370

Query: 181 LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
           LFE RLCVPS S +KTEL++EAHSSPFSMHP S KMYQDLKRVYWWRNMKREVAEFVSKC
Sbjct: 371 LFESRLCVPSDSAIKTELLTEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKC 430

Query: 241 LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
           LVC       QK AGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 431 LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 490

Query: 301 FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
           FV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 491 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 550

Query: 361 FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
           FHPQT+GQTERLNQVLEDMLRACALEFPGSWD+HLHLMEF+YNNS+QATIGMAPFEALYG
Sbjct: 551 FHPQTDGQTERLNQVLEDMLRACALEFPGSWDAHLHLMEFAYNNSYQATIGMAPFEALYG 610

Query: 421 KCCRSPVCWGGVG 427
           KCCRSPVCWG VG
Sbjct: 611 KCCRSPVCWGEVG 623

[Close]

BLAST of Cmc11g0289051 vs. ExPASy TrEMBL
Match: A0A5A7UP94 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold126G00190 PE=4 SV=1)

HSP 1 Score: 816.6 bits (2108), Expect = 4.9e-233
Identity = 400/433 (92.38%), Postives = 413/433 (95.38%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTQDLELAAVVFALKIWRHYLYGEKIQIFTNHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPT DLELAAVVFALKIWRHYLYGEKIQIFT+HKSLKYFF
Sbjct: 402 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 461

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPSKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHP KANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 462 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 521

Query: 121 AEIAITVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAIEFSISSDGGL 180
           AEIA++VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQA+EFS+SSDGGL
Sbjct: 522 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGL 581

Query: 181 LFERRLCVPSGSTVKTELVSEAHSSPFSMHPRSMKMYQDLKRVYWWRNMKREVAEFVSKC 240
           LFERRLCVPS S VKTEL++EAHSSPFSMHP S KMYQDLKR+YWWRNMKREVAEFVSKC
Sbjct: 582 LFERRLCVPSDSAVKTELLAEAHSSPFSMHPGSTKMYQDLKRIYWWRNMKREVAEFVSKC 641

Query: 241 LVC-------QKLAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 300
           LVC       QK AGLLQPLSIPEWKWENVSMDFI GLPRTLRGFTVIWVVVDRLTKSAH
Sbjct: 642 LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFIAGLPRTLRGFTVIWVVVDRLTKSAH 701

Query: 301 FVSGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTFKFWKGLQTAMGTRLDFSTA 360
           FV GKSTYT SKWAQLYMSEIVRLHGVPVSIVSDRDARFT KFWKGLQTAMGTRLDFSTA
Sbjct: 702 FVPGKSTYTTSKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 761

Query: 361 FHPQTNGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFSYNNSFQATIGMAPFEALYG 420
           FHPQT+GQTERLN+VLEDMLRACALEFPGSWDSHLHLMEF+YNNS+QATIGMAPFEALY 
Sbjct: 762 FHPQTDGQTERLNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYD 821

Query: 421 KCCRSPVCWGGVG 427
           KCCRSP+CWG VG
Sbjct: 822 KCCRSPICWGEVG 834

The following BLAST results are available for this feature:

BLAST of Cmc11g0289051 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051368.1	2.4e-234	93.53	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051744.1	7.7e-233	93.30	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051357.1	7.7e-233	93.07	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035938.1	1.0e-232	92.61	pol protein [Cucumis melo var. makuwa]	[more]
KAA0057672.1	1.0e-232	92.38	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0289051 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	5.1e-54	30.31	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	5.1e-54	30.31	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.1e-54	30.31	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	5.1e-54	30.31	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	5.1e-54	30.31	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0289051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7V9	1.2e-234	93.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UAA8	3.7e-233	93.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7U8T5	3.7e-233	93.30	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5A7SZD6	4.9e-233	92.61	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]
A0A5A7UP94	4.9e-233	92.38	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold126G00190 PE...	[more]

BLAST of Cmc11g0289051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 5..79 e-value: 6.5E-25 score: 87.5
None	No IPR available	GENE3D	1.10.340.70		coord: 158..246 e-value: 5.4E-16 score: 60.6
None	No IPR available	GENE3D	3.10.20.370		coord: 2..50 e-value: 1.3E-5 score: 27.1
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 5..109 coord: 185..409
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 2..101 e-value: 1.11561E-48 score: 159.966
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 194..245 e-value: 6.3E-14 score: 51.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 249..422 e-value: 2.0E-44 score: 153.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 252..415 score: 18.662233
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 253..412
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0289051.1	Cmc11g0289051.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding