Cmc09g0252911 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0252911
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr09: 18903221 .. 18903727 (+)
RNA-Seq Expression	Cmc09g0252911
Synteny	Cmc09g0252911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCTCCTAGACTAGCTCACTTTGATGTTGTTTATAGAATCCTAAGATACTTAAAAGGTACTCCACGAAAAGGCATATTGTTTAAAAAACATGACCACCAAAATGTCAAAGTGTACACTAATGCTGATTGGGCAAGTACCACAACTGATAGAAAATCCACTTCTGGTTATTGCTCCTTTGTTGGAGGAAATCTAGTTACTTGGCGAAATAAAAACAGAGTGGTTGCAAGAAGTATTATAGAAGCAAAATTTAGGACATTAGCACATGGTATTTGTGAGGGCATATGGATAAGAAGACTATTGGAAGAATTGAGATTCTCTCAAACAATGTCTATTCACATTTATTGTGATAAAAAGGCAACAATTTTCATTGCCCACAATACGGTCCTTCGTGATTGGACAAAACATATTGAAGTTGATGAGCACCTCATAAAAGAGAAGATTGTTCAAGGTATAATATGCATCCTAATCTTCCAACAACAGAACAAATCGCACTTGTGTTAA

mRNA sequence

ATGCATGCTCCTAGACTAGCTCACTTTGATGTTGTTTATAGAATCCTAAGATACTTAAAAGGTACTCCACGAAAAGGCATATTGTTTAAAAAACATGACCACCAAAATGTCAAAGTGTACACTAATGCTGATTGGGCAAGTACCACAACTGATAGAAAATCCACTTCTGGTTATTGCTCCTTTGTTGGAGGAAATCTAGTTACTTGGCGAAATAAAAACAGAGTGGTTGCAAGAAGTATTATAGAAGCAAAATTTAGGACATTAGCACATGGTATTTGTGAGGGCATATGGATAAGAAGACTATTGGAAGAATTGAGATTCTCTCAAACAATGTCTATTCACATTTATTGTGATAAAAAGGCAACAATTTTCATTGCCCACAATACGGTCCTTCGTGATTGGACAAAACATATTGAAGTTGATGAGCACCTCATAAAAGAGAAGATTGTTCAAGGTATAATATGCATCCTAATCTTCCAACAACAGAACAAATCGCACTTGTGTTAA

Coding sequence (CDS)

ATGCATGCTCCTAGACTAGCTCACTTTGATGTTGTTTATAGAATCCTAAGATACTTAAAAGGTACTCCACGAAAAGGCATATTGTTTAAAAAACATGACCACCAAAATGTCAAAGTGTACACTAATGCTGATTGGGCAAGTACCACAACTGATAGAAAATCCACTTCTGGTTATTGCTCCTTTGTTGGAGGAAATCTAGTTACTTGGCGAAATAAAAACAGAGTGGTTGCAAGAAGTATTATAGAAGCAAAATTTAGGACATTAGCACATGGTATTTGTGAGGGCATATGGATAAGAAGACTATTGGAAGAATTGAGATTCTCTCAAACAATGTCTATTCACATTTATTGTGATAAAAAGGCAACAATTTTCATTGCCCACAATACGGTCCTTCGTGATTGGACAAAACATATTGAAGTTGATGAGCACCTCATAAAAGAGAAGATTGTTCAAGGTATAATATGCATCCTAATCTTCCAACAACAGAACAAATCGCACTTGTGTTAA

Protein sequence

MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCSFVGGNLVTWRNKNRVVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDKKATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICILIFQQQNKSHLC

Homology

[Close]

BLAST of Cmc09g0252911 vs. NCBI nr
Match: XP_039014820.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120144958 [Hibiscus syriacus])

HSP 1 Score: 221.1 bits (562), Expect = 7.3e-54
Identity = 102/157 (64.97%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1    MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
            MH+P   HF+ VYRILRYLKG P +G+LFKKH H  V+VYT+ADW  + TDR+STSGYCS
Sbjct: 946  MHSPGAEHFEAVYRILRYLKGIPGRGLLFKKHGHLQVEVYTDADWTGSVTDRRSTSGYCS 1005

Query: 61   FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
            FVGGNLVTWR+K + VVARS  EA+FR +AHGICE +WI+R+LEEL+FS +  + +YCD 
Sbjct: 1006 FVGGNLVTWRSKKQNVVARSSAEAEFRDVAHGICEAMWIKRILEELKFSYSTPMKVYCDN 1065

Query: 121  KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
            K  I IAHN V  D TKHIEVD+H IKEK+  GIIC+
Sbjct: 1066 KVAIAIAHNLVFHDRTKHIEVDKHFIKEKVNAGIICM 1102

[Close]

BLAST of Cmc09g0252911 vs. NCBI nr
Match: RVX14578.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 217.6 bits (553), Expect = 8.0e-53
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MHAP L HF+VVYRILRYLKGTP KG+LFK   H  ++ YT+ADW  +  DR+STS YCS
Sbjct: 194 MHAPGLEHFEVVYRILRYLKGTPGKGLLFKSRGHLQIETYTDADWVGSIVDRRSTSRYCS 253

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           FVGGNLVTWR+K + VVARS +EA+FR +AHGICE +WIRRLLEEL+ + +  + +YCD 
Sbjct: 254 FVGGNLVTWRSKKQNVVARSSVEAEFRVVAHGICEIMWIRRLLEELKMTSSSPMKLYCDN 313

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I +AHN VL D TKH+EVD+H IKEKI  G++C+
Sbjct: 314 KAAISVAHNLVLHDRTKHVEVDKHFIKEKIDNGLVCM 350

[Close]

BLAST of Cmc09g0252911 vs. NCBI nr
Match: RVW50129.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 217.6 bits (553), Expect = 8.0e-53
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MHAP L HF+VVYRILRYLKGTP KG+LFK   H  ++ YT+ADW  +  DR+STS YCS
Sbjct: 623 MHAPGLEHFEVVYRILRYLKGTPGKGLLFKSRGHLQIETYTDADWVGSIVDRRSTSRYCS 682

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           FVGGNLVTWR+K + VVARS +EA+FR +AHGICE +WIRRLLEEL+ + +  + +YCD 
Sbjct: 683 FVGGNLVTWRSKKQNVVARSSVEAEFRVVAHGICEIMWIRRLLEELKMTSSSPMKLYCDN 742

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I +AHN VL D TKH+EVD+H IKEKI  G++C+
Sbjct: 743 KAAISVAHNLVLHDRTKHVEVDKHFIKEKIDNGLVCM 779

[Close]

BLAST of Cmc09g0252911 vs. NCBI nr
Match: RVW65750.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 214.9 bits (546), Expect = 5.2e-52
Identity = 98/157 (62.42%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MHAP   HF+ VYRILRYLKGTP +G+LFK   H  ++ YT+ADWA +  DR+STSGYCS
Sbjct: 458 MHAPGPEHFEAVYRILRYLKGTPGRGLLFKSRGHLQIETYTDADWAGSIVDRRSTSGYCS 517

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           FVGGNLVTWR+K + VVARS +EA+FR + HGICE +WIRRLLEEL+ + +  + +YCD 
Sbjct: 518 FVGGNLVTWRSKKQNVVARSSVEAEFRAVTHGICEIMWIRRLLEELKMTGSSPMKLYCDN 577

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I +AHN VL D TKH+EVD+H IKEKI  G++C+
Sbjct: 578 KAAISVAHNPVLHDCTKHVEVDKHFIKEKIDNGLVCM 614

[Close]

BLAST of Cmc09g0252911 vs. NCBI nr
Match: CAN60456.1 (hypothetical protein VITISV_019554 [Vitis vinifera])

HSP 1 Score: 214.5 bits (545), Expect = 6.8e-52
Identity = 98/157 (62.42%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MHAP   HF+ VYRILRYLKGTP +G+LFK   H  ++ YT+ADWA +  DR+STSGYCS
Sbjct: 786 MHAPGPEHFEAVYRILRYLKGTPGRGLLFKSRGHLQIETYTDADWAGSIVDRRSTSGYCS 845

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           FVGGNLVTWR+K + VVARS +EA+FR + HGICE +WIRRLLEEL+ + +  + +YCD 
Sbjct: 846 FVGGNLVTWRSKKQNVVARSSVEAEFRAVTHGICEIMWIRRLLEELKMTGSSPMKLYCDN 905

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I +AHN VL D TKH+EVD+H IKEKI  G++C+
Sbjct: 906 KAXISVAHNPVLHDCTKHVEVDKHFIKEKIDNGLVCM 942

[Close]

BLAST of Cmc09g0252911 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-23
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 0


Query: 1    MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
            MH P   H   + RILRYL GTP  GI  KK +  ++  Y++ADWA    D  ST+GY  
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   FVGGNLVTWRN-KNRVVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
            ++G + ++W + K + V RS  EA++R++A+   E  WI  LL EL    T    IYCD 
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392

Query: 121  KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICIL 158
                ++  N V     KHI +D H I+ ++  G + ++
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVV 1430

[Close]

BLAST of Cmc09g0252911 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-23
Identity = 57/158 (36.08%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 1    MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
            MH P   H++ + R+LRYL GTP  GI  KK +  ++  Y++ADWA  T D  ST+GY  
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   FVGGNLVTWRN-KNRVVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
            ++G + ++W + K + V RS  EA++R++A+   E  WI  LL EL    +    IYCD 
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDN 1375

Query: 121  KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICIL 158
                ++  N V     KHI +D H I+ ++  G + ++
Sbjct: 1376 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVV 1413

[Close]

BLAST of Cmc09g0252911 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-18
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 14   RILRYLKGTPRKGILFKKHDHQNVKV--YTNADWASTTTDRKSTSGYC-SFVGGNLVTWR 73
            R+LRYLKGT    ++FKK+     K+  Y ++DWA +  DRKST+GY       NL+ W 
Sbjct: 1223 RVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWN 1282

Query: 74   NKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDKKATIFIAHNT 133
             K +  VA S  EA++  L   + E +W++ LL  +       I IY D +  I IA+N 
Sbjct: 1283 TKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNP 1342

Query: 134  VLRDWTKHIEVDEHLIKEKIVQGIICILIFQQQNK 165
                  KHI++  H  +E++   +IC+     +N+
Sbjct: 1343 SCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQ 1377

[Close]

BLAST of Cmc09g0252911 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-17
Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MH P LA FD++ R+LRY+KGT   G+   K+   NV+ + ++DWA  T+ R+ST+G+C+
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIW 98
           F+G N+++W  K +  V+RS  E ++R LA    E  W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc09g0252911 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-16
Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 4    PRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCSFVG 63
            P   H++ V  ILRYL+GT    + F   D   +K YT+AD A    +RKS++GY     
Sbjct: 1143 PGKEHWEAVKWILRYLRGTTGDCLCFGGSD-PILKGYTDADMAGDIDNRKSSTGYLFTFS 1202

Query: 64   GNLVTWRNK-NRVVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDKKAT 123
            G  ++W++K  + VA S  EA++        E IW++R L+EL   Q   + +YCD ++ 
Sbjct: 1203 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSA 1262

Query: 124  IFIAHNTVLRDWTKHIEVDEHLIKEKI 150
            I ++ N++    TKHI+V  H I+E +
Sbjct: 1263 IDLSKNSMYHARTKHIDVRYHWIREMV 1287

[Close]

BLAST of Cmc09g0252911 vs. ExPASy TrEMBL
Match: A0A1S8ACK5 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.6e-54
Identity = 100/157 (63.69%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MH+P   HFD  YRILRYLKGTP KG++F+K D+  ++VYT+ADWA ++TDR+STSGYC+
Sbjct: 370 MHSPGQEHFDAAYRILRYLKGTPGKGLMFRKRDNLQIEVYTDADWAGSSTDRRSTSGYCT 429

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           F+GGNLVTWR+K + VVARS  EA+FR+LAHGICE IWI+RL  +L+   ++ + IYCD 
Sbjct: 430 FIGGNLVTWRSKKQSVVARSSAEAEFRSLAHGICEAIWIKRLFSDLKIPVSLPVKIYCDN 489

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I IAHN VL D TKHIEVD+H IKEKI  G+IC+
Sbjct: 490 KAAISIAHNPVLHDRTKHIEVDKHFIKEKIESGVICV 526

[Close]

BLAST of Cmc09g0252911 vs. ExPASy TrEMBL
Match: A0A2N9EE05 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS847 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.0e-53
Identity = 101/157 (64.33%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 1    MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
            MH+P   HF+ VYRILRYLKGTP KG+LFKK  H  ++ YT+ADWA + TDR+STSGYCS
Sbjct: 991  MHSPGPEHFEAVYRILRYLKGTPGKGLLFKKRGHLQIEAYTDADWAGSITDRRSTSGYCS 1050

Query: 61   FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
            FVGGNLVTWR+K + VVARS  EA+FR +AHGICE +WI+R+LEEL+ S ++ + +YCD 
Sbjct: 1051 FVGGNLVTWRSKKQNVVARSSAEAEFRAVAHGICEVMWIKRMLEELKASDSLPMKLYCDN 1110

Query: 121  KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
            KA I IAHN VL D TKH+EVD+H IKEK+  G+IC+
Sbjct: 1111 KAAISIAHNPVLHDRTKHVEVDKHFIKEKLESGLICM 1147

[Close]

BLAST of Cmc09g0252911 vs. ExPASy TrEMBL
Match: A0A2N9G304 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21755 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.0e-53
Identity = 101/157 (64.33%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MH+P   HF+ VYRILRYLKGTP KG+LFKK  H  ++ YT+ADWA + TDR+STSGYCS
Sbjct: 636 MHSPGPEHFEAVYRILRYLKGTPGKGLLFKKRGHLQIEAYTDADWAGSITDRRSTSGYCS 695

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           FVGGNLVTWR+K + VVARS  EA+FR +AHGICE +WI+R+LEEL+ S ++ + +YCD 
Sbjct: 696 FVGGNLVTWRSKKQNVVARSSAEAEFRVVAHGICEVMWIKRMLEELKASDSLPMKLYCDN 755

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I IAHN VL D TKH+EVD+H IKEK+  G+IC+
Sbjct: 756 KAAISIAHNPVLHDRTKHVEVDKHFIKEKLESGLICM 792

[Close]

BLAST of Cmc09g0252911 vs. ExPASy TrEMBL
Match: A0A438K065 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1804 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.9e-53
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MHAP L HF+VVYRILRYLKGTP KG+LFK   H  ++ YT+ADW  +  DR+STS YCS
Sbjct: 194 MHAPGLEHFEVVYRILRYLKGTPGKGLLFKSRGHLQIETYTDADWVGSIVDRRSTSRYCS 253

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           FVGGNLVTWR+K + VVARS +EA+FR +AHGICE +WIRRLLEEL+ + +  + +YCD 
Sbjct: 254 FVGGNLVTWRSKKQNVVARSSVEAEFRVVAHGICEIMWIRRLLEELKMTSSSPMKLYCDN 313

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I +AHN VL D TKH+EVD+H IKEKI  G++C+
Sbjct: 314 KAAISVAHNLVLHDRTKHVEVDKHFIKEKIDNGLVCM 350

[Close]

BLAST of Cmc09g0252911 vs. ExPASy TrEMBL
Match: A0A438EQX0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_267 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.9e-53
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MHAP L HF+VVYRILRYLKGTP KG+LFK   H  ++ YT+ADW  +  DR+STS YCS
Sbjct: 623 MHAPGLEHFEVVYRILRYLKGTPGKGLLFKSRGHLQIETYTDADWVGSIVDRRSTSRYCS 682

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDK 120
           FVGGNLVTWR+K + VVARS +EA+FR +AHGICE +WIRRLLEEL+ + +  + +YCD 
Sbjct: 683 FVGGNLVTWRSKKQNVVARSSVEAEFRVVAHGICEIMWIRRLLEELKMTSSSPMKLYCDN 742

Query: 121 KATIFIAHNTVLRDWTKHIEVDEHLIKEKIVQGIICI 157
           KA I +AHN VL D TKH+EVD+H IKEKI  G++C+
Sbjct: 743 KAAISVAHNLVLHDRTKHVEVDKHFIKEKIDNGLVCM 779

[Close]

BLAST of Cmc09g0252911 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-26
Identity = 56/149 (37.58%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 3   APRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCSFV 62
           APRLAH   V +IL Y+KGT  +G+ +       ++V+++A + S    R+ST+GYC F+
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467

Query: 63  GGNLVTWRN-KNRVVARSIIEAKFRTLAHGICEGIWIRRLLEELRFSQTMSIHIYCDKKA 122
           G +L++W++ K +VV++S  EA++R L+    E +W+ +   EL+   +    ++CD  A
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTA 527

Query: 123 TIFIAHNTVLRDWTKHIEVDEHLIKEKIV 151
            I IA N V  + TKHIE D H ++E+ V
Sbjct: 528 AIHIATNAVFHERTKHIESDCHSVRERSV 556

[Close]

BLAST of Cmc09g0252911 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-18
Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MHAPRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCS 60
           MH P LA FD++ R+LRY+KGT   G+   K+   NV+ + ++DWA  T+ R+ST+G+C+
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FVGGNLVTWRNKNR-VVARSIIEAKFRTLAHGICEGIW 98
           F+G N+++W  K +  V+RS  E ++R LA    E  W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc09g0252911 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 22/60 (36.67%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 3  APRLAHFDVVYRILRYLKGTPRKGILFKKHDHQNVKVYTNADWASTTTDRKSTSGYCSFV 62
          A R A    VY++L Y+KGT  +G+ +       +K + ++DWAS    R+S +G+CS V
Sbjct: 23 ASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc09g0252911 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_039014820.1	7.3e-54	64.97	LOW QUALITY PROTEIN: uncharacterized protein LOC120144958 [Hibiscus syriacus]	[more]
RVX14578.1	8.0e-53	63.69	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW50129.1	8.0e-53	63.69	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW65750.1	5.2e-52	62.42	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN60456.1	6.8e-52	62.42	hypothetical protein VITISV_019554 [Vitis vinifera]	[more]

BLAST of Cmc09g0252911 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.8e-23	36.71	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.3e-23	36.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.3e-18	34.19	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	4.3e-17	41.84	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	2.2e-16	35.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Cmc09g0252911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S8ACK5	4.6e-54	63.69	Cysteine-rich RLK RECEPTOR-like protein kinase OS=Citrus limon OX=2708 PE=4 SV=1	[more]
A0A2N9EE05	1.0e-53	64.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS847 PE=4 SV=1	[more]
A0A2N9G304	1.0e-53	64.33	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A438K065	3.9e-53	63.69	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438EQX0	3.9e-53	63.69	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of Cmc09g0252911 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.4e-26	37.58	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.1e-18	41.84	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.9e-07	36.67	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..105
None	No IPR available	PANTHER	PTHR11439:SF352	SUBFAMILY NOT NAMED	coord: 1..105
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 38..156 e-value: 2.45321E-50 score: 156.474

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0252911.1	Cmc09g0252911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0065007	biological regulation
molecular_function	GO:0005488	binding