Cmc09g0244651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0244651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr09: 7697688 .. 7698140 (-)
RNA-Seq Expression	Cmc09g0244651
Synteny	Cmc09g0244651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTAAAAACAGCCTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTTCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGAAAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTTTATTCAAAGATGGTTGGAGTTGATTGCATATTAATATGTCTATACGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTCACACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAAATACTAAAGAAGTTTGA

mRNA sequence

ATGGACGTAAAAACAGCCTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTTCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGAAAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTTTATTCAAAGATGGTTGGAGTTGATTGCATATTAATATGTCTATACGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTCACACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAAATACTAAAGAAGTTTGA

Coding sequence (CDS)

ATGGACGTAAAAACAGCCTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTTCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGAAAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTTTATTCAAAGATGGTTGGAGTTGATTGCATATTAATATGTCTATACGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTCACACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAAATACTAAAGAAGTTTGA

Protein sequence

MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKNTKEV

Homology

[Close]

BLAST of Cmc09g0244651 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.7e-74
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            MDVKTAFLNG+LEEEIYMTQPEGFKISGQENKVCKLRK LYGLKQAPKQWYEKFNNTLIT
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
            NGFKINSSDTCVYSKMVG DCILICLYVDDMLIFGTNMELIT TK+FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
            DVILGVKIRKNKTSLSLCQSHYVEK  K+
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKK 1092

[Close]

BLAST of Cmc09g0244651 vs. NCBI nr
Match: XP_027936188.1 (uncharacterized protein LOC114191208 [Vigna unguiculata])

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54
Identity = 104/149 (69.80%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
           MDVK AFLNGDLEEEIYM QPEGF ++GQE  VCKL K LY LKQAPKQWYEKF+ TL+ 
Sbjct: 503 MDVKMAFLNGDLEEEIYMDQPEGFVVAGQEANVCKLIKSLYDLKQAPKQWYEKFDRTLVN 562

Query: 61  NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
           NG+ +N+S++CVYSK+ G +C++ICLYVDDMLIFG N+E+I  TK FL +HFEMKDLGEA
Sbjct: 563 NGYVVNASNSCVYSKLFGSNCVIICLYVDDMLIFGFNLEVINDTKTFLIAHFEMKDLGEA 622

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
           +VILGVKIRK +   SLCQS+Y+EK  K+
Sbjct: 623 NVILGVKIRKTEFGFSLCQSYYIEKILKK 651

[Close]

BLAST of Cmc09g0244651 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 214.2 bits (544), Expect = 7.9e-52
Identity = 104/149 (69.80%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
           MDVKTAFLNGDL+EEIYM QPEGF +SG E+KVCKLRK LYGLKQAPK+WYEKF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
           +G+ +N+SD+CVYSK      +LICLYVDDMLIFG +M  I  TK FLSS FEMKDLGEA
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
           DVILGVKI++    +SLCQSHY+E+  K+
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKK 443

[Close]

BLAST of Cmc09g0244651 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 211.8 bits (538), Expect = 3.9e-51
Identity = 103/149 (69.13%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            MDVKTAFLNGDL EEIYM QPEGF I GQENKVCKL K LYGLKQAPKQW+EKF+NTL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT++E++  TK FLSS F+MKDLGEA
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
            DVILG+K+ K  +  SL QSHY+EK  K+
Sbjct: 1036 DVILGIKVVKTDSGFSLNQSHYIEKILKK 1064

[Close]

BLAST of Cmc09g0244651 vs. NCBI nr
Match: KAG7592238.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 211.8 bits (538), Expect = 3.9e-51
Identity = 103/149 (69.13%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            MDVKTAFLNGDL EEIYM QPEGF I GQENKVCKL K LYGLKQAPKQW+EKF+NTL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT++E++  TK FLSS F+MKDLGEA
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
            DVILG+K+ K  +  SL QSHY+EK  K+
Sbjct: 1036 DVILGIKVVKTDSGFSLNQSHYIEKILKK 1064

[Close]

BLAST of Cmc09g0244651 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-35
Identity = 80/148 (54.05%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            +DVKTAFL+GDLEEEIYM QPEGF+++G+++ VCKL K LYGLKQAP+QWY KF++ + +
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NGFKINSSDTCVYSKMVGV-DCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGE 120
              +    SD CVY K     + I++ LYVDDMLI G +  LI   K  LS  F+MKDLG 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  ADVILGVKIRKNKTS--LSLCQSHYVEK 146
            A  ILG+KI + +TS  L L Q  Y+E+
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIER 1068

[Close]

BLAST of Cmc09g0244651 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.0e-26
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            +DV  AFL G L +++YM+QP GF    + N VCKLRK LYGLKQAP+ WY +  N L+T
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
             GF  + SDT ++    G   + + +YVDD+LI G +  L+ +T   LS  F +KD  E 
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  DVILGVKIRKNKTSLSLCQSHYV 144
               LG++ ++  T L L Q  Y+
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYI 1206

[Close]

BLAST of Cmc09g0244651 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.5e-24
Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            +DV  AFL G L +E+YM+QP GF    + + VC+LRK +YGLKQAP+ WY +    L+T
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
             GF  + SDT ++    G   I + +YVDD+LI G +  L+ HT   LS  F +K+  + 
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  DVILGVKIRKNKTSLSLCQSHY 143
               LG++ ++    L L Q  Y
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRY 1188

[Close]

BLAST of Cmc09g0244651 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 2.8e-23
Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            MDVKTAFLNG L+EEIYM  P+G  IS   + VCKL K +YGLKQA + W+E F   L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   NGFKINSSDTCVYSKMVG--VDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLG 120
              F  +S D C+Y    G   + I + LYVDD++I   +M  + + K +L   F M DL 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  EADVILGVKIRKNKTSLSLCQSHYVEK 146
            E    +G++I   +  + L QS YV+K
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKK 1145

[Close]

BLAST of Cmc09g0244651 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 1   MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
           MDV TAFLN  ++E IY+ QP GF      + V +L   +YGLKQAP  W E  NNTL  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
            GF  +  +  +Y +      I I +YVDD+L+   + ++    K  L+  + MKDLG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 DVILGVKIRKNKT-SLSLCQSHYVEKNTKE 150
           D  LG+ I ++    ++L    Y+ K   E
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASE 150

[Close]

BLAST of Cmc09g0244651 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            MDVKTAFLNG+LEEEIYMTQPEGFKISGQENKVCKLRK LYGLKQAPKQWYEKFNNTLIT
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
            NGFKINSSDTCVYSKMVG DCILICLYVDDMLIFGTNMELIT TK+FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
            DVILGVKIRKNKTSLSLCQSHYVEK  K+
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKK 1092

[Close]

BLAST of Cmc09g0244651 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 104/149 (69.80%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
           MDVKTAFLNGDL+EEIYM QPEGF + GQENKVCKLRK LYGLKQAPKQW+EKF+ TL++
Sbjct: 383 MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 442

Query: 61  NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
           NGF +N SD CVYSK  G   ++ICLYVDDMLIFGT+M  + +TK FLSS+F+MKDLGEA
Sbjct: 443 NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 502

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
           D+ILG++I +N   L+L QSHY+EK  K+
Sbjct: 503 DLILGIRIIRNNEGLTLSQSHYIEKVLKK 531

[Close]

BLAST of Cmc09g0244651 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 104/149 (69.80%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1    MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
            MDVKTAFLNGDL+EEIYM QPEGF + GQENKVCKLRK LYGLKQAPKQW+EKF+ TL++
Sbjct: 893  MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 952

Query: 61   NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
            NGF +N SD CVYSK  G   ++ICLYVDDMLIFGT+M  + +TK FLSS+F+MKDLGEA
Sbjct: 953  NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 1012

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
            D+ILG++I +N   L+L QSHY+EK  K+
Sbjct: 1013 DLILGIRIIRNNEGLTLSQSHYIEKVLKK 1041

[Close]

BLAST of Cmc09g0244651 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.8e-52
Identity = 104/149 (69.80%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
           MDVKTAFLNGDL+EEIYM QPEGF +SG E+KVCKLRK LYGLKQAPK+WYEKF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
           +G+ +N+SD+CVYSK      +LICLYVDDMLIFG +M  I  TK FLSS FEMKDLGEA
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
           DVILGVKI++    +SLCQSHY+E+  K+
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKK 443

[Close]

BLAST of Cmc09g0244651 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.1e-50
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLIT 60
           MDVKTAFLNGDLEEEIYM QPEGF +  QE+KVCKL K LYGLKQAPKQW+EKF+N L++
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  NGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEA 120
            GFK+N SD C+Y K  G  CI+ICLYVDDMLIFG+N+ +I   K  LS +F+MKDLGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKNTKE 150
           DVILG+KI + +  + L QSHY+EK  K+
Sbjct: 121 DVILGIKITRTENGIFLDQSHYIEKTLKK 149

[Close]

BLAST of Cmc09g0244651 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 111.3 bits (277), Expect = 6.8e-25
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 1   MDVKTAFLNGDLEEEIYMTQPEGFKI----SGQENKVCKLRKFLYGLKQAPKQWYEKFNN 60
           +D+  AFLNGDL+EEIYM  P G+      S   N VC L+K +YGLKQA +QW+ KF+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  TLITNGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKD 120
           TLI  GF  + SD   + K+     + + +YVDD++I   N   +   K  L S F+++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGEADVILGVKIRKNKTSLSLCQSHY 143
           LG     LG++I ++   +++CQ  Y
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKY 338

[Close]

BLAST of Cmc09g0244651 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 8.3e-07
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 84  ICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYV 143
           + LYVDD+L+ G++  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 144 EK 146
           E+
Sbjct: 63  EQ 64

The following BLAST results are available for this feature:

BLAST of Cmc09g0244651 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	5.7e-74	94.63	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_027936188.1	6.5e-54	69.80	uncharacterized protein LOC114191208 [Vigna unguiculata]	[more]
KAD6453934.1	7.9e-52	69.80	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]
KAG7551885.1	3.9e-51	69.13	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7592238.1	3.9e-51	69.13	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of Cmc09g0244651 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-35	54.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	6.0e-26	42.66	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.5e-24	40.14	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.8e-23	43.54	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	1.2e-18	36.67	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc09g0244651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	2.7e-74	94.63	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A2N9EQT1	1.1e-54	69.80	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9H4B0	1.1e-54	69.80	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1	[more]
A0A5N6PGV2	3.8e-52	69.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]
A0A5D3D4T4	2.1e-50	66.44	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]

BLAST of Cmc09g0244651 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.8e-25	39.73	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.3e-07	41.94	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..147 e-value: 6.1E-46 score: 157.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..145
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0244651.1	Cmc09g0244651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding