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Cmc09g0244651.1 (mRNA) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGTAAAAACAGCCTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTTCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGAAAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTTTATTCAAAGATGGTTGGAGTTGATTGCATATTAATATGTCTATACGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTCACACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAAATACTAAAGAAGTTTGA ATGGACGTAAAAACAGCCTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTTCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGAAAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTTTATTCAAAGATGGTTGGAGTTGATTGCATATTAATATGTCTATACGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTCACACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAAATACTAAAGAAGTTTGA ATGGACGTAAAAACAGCCTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTTCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGAAAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTTTATTCAAAGATGGTTGGAGTTGATTGCATATTAATATGTCTATACGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTCACACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATTCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAAATACTAAAGAAGTTTGA MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKFLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVDCILICLYVDDMLIFGTNMELITHTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKNTKEV Homology
BLAST of Cmc09g0244651.1 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 287.7 bits (735), Expect = 5.7e-74 Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. NCBI nr
Match: XP_027936188.1 (uncharacterized protein LOC114191208 [Vigna unguiculata]) HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54 Identity = 104/149 (69.80%), Postives = 125/149 (83.89%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha]) HSP 1 Score: 214.2 bits (544), Expect = 7.9e-52 Identity = 104/149 (69.80%), Postives = 122/149 (81.88%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]) HSP 1 Score: 211.8 bits (538), Expect = 3.9e-51 Identity = 103/149 (69.13%), Postives = 120/149 (80.54%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. NCBI nr
Match: KAG7592238.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]) HSP 1 Score: 211.8 bits (538), Expect = 3.9e-51 Identity = 103/149 (69.13%), Postives = 120/149 (80.54%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 2.4e-35 Identity = 80/148 (54.05%), Postives = 104/148 (70.27%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 6.0e-26 Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 9.5e-24 Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 109.8 bits (273), Expect = 2.8e-23 Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2) HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18 Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74 Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54 Identity = 104/149 (69.80%), Postives = 125/149 (83.89%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54 Identity = 104/149 (69.80%), Postives = 125/149 (83.89%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 3.8e-52 Identity = 104/149 (69.80%), Postives = 122/149 (81.88%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 2.1e-50 Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 111.3 bits (277), Expect = 6.8e-25 Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 0
BLAST of Cmc09g0244651.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 51.2 bits (121), Expect = 8.3e-07 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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