Cmc08g0222531 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0222531
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDEAD-box ATP-dependent RNA helicase 32
LocationCMiso1.1chr08: 11448029 .. 11449042 (-)
RNA-Seq ExpressionCmc08g0222531
SyntenyCmc08g0222531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTTAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAACTTGATGCTACTGATAATGACTGTCATTGTATTGATGTTGATGATGAGGACTGATGTTATGTTAATGACTGGTAGATTGATGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATACTCATGCCATGTTATGATGTTGTGTTATGCTACATGCTATGGATATGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCGGGTTCACTACAGACCAGCATGTCCTAAGTGCTCCCTCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTTCAGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGATAGAGGAAAGCTGGCGAGCGACAAAGAAGGATTCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTCCCTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACATTATCGATTAAAACCTTCGTGTTTTCGTTTAGGTGGATCCGTTGAGCGTGGACTCGAT

mRNA sequence

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGATAGAGGAAAGCTGGCGAGCGACAAAGAAGGATTCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTCCCTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACATTATCGATTAAAACCTTCGTGTTTTCGTTTAGGTGGATCCGTTGAGCGTGGACTCGAT

Coding sequence (CDS)

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGATAGAGGAAAGCTGGCGAGCGACAAAGAAGGATTCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MIRIKLIGEFLLSTREYLVWLKSPGEGKDRGKLASDKEGFVTCHMGTQFCFRVYVSVF
Homology
[Close]
BLAST of Cmc08g0222531 vs. NCBI nr
Match: KAA0033961.1 (DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.7e-14
Identity = 52/100 (52.00%), Postives = 54/100 (54.00%), Query Frame = 0 

Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of Cmc08g0222531 vs. NCBI nr
Match: KAA0051087.1 (transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11
Identity = 49/109 (44.95%), Postives = 50/109 (45.87%), Query Frame = 0 

Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]
BLAST of Cmc08g0222531 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKDRGKLASDKEGFVTCHMGTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGK RGKLASDKEG VTCHMGTQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]
BLAST of Cmc08g0222531 vs. NCBI nr
Match: KAA0065872.1 (hypothetical protein E6C27_scaffold538G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 18  LVWLKSPGEGKDRGKLASDKEGFVTCHMGTQFCFRVYVSVF 59
           +V +  PGEGK RGKLASD+EGFV CHMGTQFCFRVYVSVF
Sbjct: 188 IVLVLPPGEGKGRGKLASDREGFVACHMGTQFCFRVYVSVF 228

[Close]
BLAST of Cmc08g0222531 vs. NCBI nr
Match: KAA0025457.1 (hypothetical protein E6C27_scaffold417G00550 [Cucumis melo var. makuwa] >TYK04724.1 hypothetical protein E5676_scaffold68G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 15 REYLVWLKSPGEGKDRGKLASDKEGFVTCHMGTQFCFRVYVSVF 59
          R  +V +   GEGKDRGKLASD+EG VTCHMGTQFCFRVYVSVF
Sbjct: 31 RSPIVLVFPSGEGKDRGKLASDREGSVTCHMGTQFCFRVYVSVF 74

[Close]
BLAST of Cmc08g0222531 vs. ExPASy TrEMBL
Match: A0A5A7SWX3 (DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00360 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 52/100 (52.00%), Postives = 54/100 (54.00%), Query Frame = 0 

Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of Cmc08g0222531 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 49/109 (44.95%), Postives = 50/109 (45.87%), Query Frame = 0 

Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]
BLAST of Cmc08g0222531 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-11
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKDRGKLASDKEGFVTCHMGTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGK RGKLASDKEG VTCHMGTQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]
BLAST of Cmc08g0222531 vs. ExPASy TrEMBL
Match: A0A5A7VC30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00420 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 18  LVWLKSPGEGKDRGKLASDKEGFVTCHMGTQFCFRVYVSVF 59
           +V +  PGEGK RGKLASD+EGFV CHMGTQFCFRVYVSVF
Sbjct: 188 IVLVLPPGEGKGRGKLASDREGFVACHMGTQFCFRVYVSVF 228

[Close]
BLAST of Cmc08g0222531 vs. ExPASy TrEMBL
Match: A0A5D3C0E4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00160 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 15 REYLVWLKSPGEGKDRGKLASDKEGFVTCHMGTQFCFRVYVSVF 59
          R  +V +   GEGKDRGKLASD+EG VTCHMGTQFCFRVYVSVF
Sbjct: 31 RSPIVLVFPSGEGKDRGKLASDREGSVTCHMGTQFCFRVYVSVF 74

The following BLAST results are available for this feature:
BLAST of Cmc08g0222531 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033961.19.7e-1452.00DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DE... [more]
KAA0051087.14.5e-1144.95transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var... [more]
KAA0045385.11.3e-1065.45hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa][more]
KAA0065872.12.2e-1080.49hypothetical protein E6C27_scaffold538G00420 [Cucumis melo var. makuwa][more]
KAA0025457.15.0e-1077.27hypothetical protein E6C27_scaffold417G00550 [Cucumis melo var. makuwa] >TYK0472... [more]
BLAST of Cmc08g0222531 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0222531 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWX34.7e-1452.00DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3CKP02.2e-1144.95Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE... [more]
A0A5A7TVG76.3e-1165.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VC301.1e-1080.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C0E42.4e-1077.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Cmc08g0222531 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0222531.1Cmc08g0222531.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding