Cmc07g0203111 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0203111
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionsnRNA-activating protein complex subunit-like
LocationCMiso1.1chr07: 24956966 .. 24958516 (+)
RNA-Seq ExpressionCmc07g0203111
SyntenyCmc07g0203111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCGTTGTGTAGATCGACGGATTTTGTAGGTTTTGGAGCAATTTCTCCATGGCTGCGATCCCGGCGGTGGCGGCAGTGACGGGTTCAGTTTCTCCTAGGTTAGTTTCTAGGGTTTCGTTATTGCTTTGCTCTAATACCTTATCGAAAGCAATTAACACCAACACGAGACTTACGTGGAAACCTGAGAACCGGAAGCGGGAGAAAAACCACGATACTTTAGTTTTTATTATTTTTCTTATAAATGAATAAAATAGGTTCAAAGGGAGAGAAAAAATAGAATACAATAGGAGTAAGAAAGGAAAAGATTTAGAAAAGATTTAGGAAATAAAATCTTCTATATTATTCTTTTCAAAAATATTCTAAGGACAAAGCCCTACTAATTCTAATAGTTATGTTTGTTTGATATTTGTTGTAAGCATGCCATCTACACTAACGGTTTGTGTGAGGTTCTGTGCGACACAAGTGTTCATGGCATGAGCTCTGTGTAGACTATGAGTTGTGTACACCGCATTTGTGTGATGTGGGTGTCATATCTCATAAAATATCAACACCTAAGAGTTGTGTATACTATATTTGTGTGACGAGAGTGCCATAACGTATAAGCTTATGTTCTGGTTTCTTGTATGCATGCTGGATGCATTTGAACATTTGTGTGGTTCAAATATGCATGGTGGACCTCGCCAGGGGTCACGTCCTAAGTATTTTTATTATTATATAATACTCATCCTTTCCCATTTTGTTTTCTTCTAGGTAAACGGGTGGTTGCAACGCGGGCCTAGGGAACAGATTAGTCGTAAGCTTCTGCATCATGATTTTGATTTGTCGTTTTTTATTAAATTATTTAAGAGTACAATGACTAGCATTGGAATGAATCAAATGTTCCATTTTGGAATTTCTATTTCGGTTTAGAATTATTGTTTAAGGGAACGCGAGCAAATTCAATGTTATTTTATGTAATAAAGCTTTTGTGGATTTTCTTTTTATTAATCACAACCAAATTTTATGTTTTCTAAACCTTACATGTTTTTTTTCAGAAAAGTTGGGTCGTTACCAGAGCCATGGAGGCGAGAGACAGGGCTGGAGCTTCAGAGGAGATTGGTCTTAATGGAGATGGCCTCTCAATTCCTTTGGGTGGGCCTATATATGCACCCAACTTGGTTGGTCCCCTCACCAGGGTCCCTCACTTTGAGTCTTCTGTTGTTCAAGAATTTCAGGTCTCATATATTTTCTCAAAAACATGTCTTTACACCTTTGTTTCTGTTCTAGATCTAATCCTTATTCTTGAGCAGAGTCTTCTGTTCTTCGAACGACTGGTTCAACTACTGGGGGATGTCAGTAACGTGAAGAAAAGGAGAGAGAGAGGCGGTGAGTGAAGAAAGAGAAGGAGAAAAGAGTCGGATCTAACCTGAAGAAACGGAGGGAGAGACGTTGCATTGCGTGTGAAGGGGAGAAGACAGAGATATGAATCTCATTCTTTTTGTATTAAGCATACATGTCAAAGGCCACTATGTGACAAAAACATATATAATATTAAAGATATATATTAGGG

mRNA sequence

CTTCCGTTGTGTAGATCGACGGATTTTGTAGGTTTTGGAGCAATTTCTCCATGGCTGCGATCCCGGCGGTGGCGGCAGTGACGGGTTCAGTTTCTCCTAGGTAAACGGGTGGTTGCAACGCGGGCCTAGGGAACAGATTAGTCAAAAGTTGGGTCGTTACCAGAGCCATGGAGGCGAGAGACAGGGCTGGAGCTTCAGAGGAGATTGGTCTTAATGGAGATGGCCTCTCAATTCCTTTGGGTGGGCCTATATATGCACCCAACTTGGTTGGTCCCCTCACCAGGGTCCCTCACTTTGAGTCTTCTGTTGTTCAAGAATTTCAGAGTCTTCTGTTCTTCGAACGACTGGTTCAACTACTGGGGGATGTCAGTAACGTGAAGAAAAGGAGAGAGAGAGGCGGTGAGTGAAGAAAGAGAAGGAGAAAAGAGTCGGATCTAACCTGAAGAAACGGAGGGAGAGACGTTGCATTGCGTGTGAAGGGGAGAAGACAGAGATATGAATCTCATTCTTTTTGTATTAAGCATACATGTCAAAGGCCACTATGTGACAAAAACATATATAATATTAAAGATATATATTAGGG

Coding sequence (CDS)

ATGGAGGCGAGAGACAGGGCTGGAGCTTCAGAGGAGATTGGTCTTAATGGAGATGGCCTCTCAATTCCTTTGGGTGGGCCTATATATGCACCCAACTTGGTTGGTCCCCTCACCAGGGTCCCTCACTTTGAGTCTTCTGTTGTTCAAGAATTTCAGAGTCTTCTGTTCTTCGAACGACTGGTTCAACTACTGGGGGATGTCAGTAACGTGAAGAAAAGGAGAGAGAGAGGCGGTGAGTGA

Protein sequence

MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSLLFFERLVQLLGDVSNVKKRRERGGE
Homology
[Close]
BLAST of Cmc07g0203111 vs. NCBI nr
Match: KAA0044534.1 (snRNA-activating protein complex subunit-like [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSLLFFERL 60
          MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSLLFFERL
Sbjct: 19 MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSLLFFERL 78

Query: 61 VQLLGDVSNVKKRRERGGE 80
          VQLLGDVSNVKKRRERGGE
Sbjct: 79 VQLLGDVSNVKKRRERGGE 97

[Close]
BLAST of Cmc07g0203111 vs. NCBI nr
Match: TYK17049.1 (snRNA-activating protein complex subunit-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 19 MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 72

[Close]
BLAST of Cmc07g0203111 vs. NCBI nr
Match: XP_016901523.1 (PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo] >XP_016901524.1 PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 3.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 26 MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 79

[Close]
BLAST of Cmc07g0203111 vs. NCBI nr
Match: XP_008459095.1 (PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo] >XP_008459096.1 PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-21
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGAS+EIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 1  MEARDRAGASDEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 54

[Close]
BLAST of Cmc07g0203111 vs. NCBI nr
Match: TYK29378.1 (snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-21
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGAS+EIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 1  MEARDRAGASDEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 54

[Close]
BLAST of Cmc07g0203111 vs. ExPASy TrEMBL
Match: A0A5A7TN54 (snRNA-activating protein complex subunit-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002780 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSLLFFERL 60
          MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSLLFFERL
Sbjct: 19 MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSLLFFERL 78

Query: 61 VQLLGDVSNVKKRRERGGE 80
          VQLLGDVSNVKKRRERGGE
Sbjct: 79 VQLLGDVSNVKKRRERGGE 97

[Close]
BLAST of Cmc07g0203111 vs. ExPASy TrEMBL
Match: A0A1S4DZX0 (snRNA-activating protein complex subunit-like OS=Cucumis melo OX=3656 GN=LOC103494603 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 26 MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 79

[Close]
BLAST of Cmc07g0203111 vs. ExPASy TrEMBL
Match: A0A5D3D338 (snRNA-activating protein complex subunit-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G002000 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 19 MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 72

[Close]
BLAST of Cmc07g0203111 vs. ExPASy TrEMBL
Match: A0A1S3CAL2 (snRNA-activating protein complex subunit-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498307 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGAS+EIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 1  MEARDRAGASDEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 54

[Close]
BLAST of Cmc07g0203111 vs. ExPASy TrEMBL
Match: A0A5D3E0W6 (snRNA-activating protein complex subunit-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G001090 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MEARDRAGASEEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 55
          MEARDRAGAS+EIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL
Sbjct: 1  MEARDRAGASDEIGLNGDGLSIPLGGPIYAPNLVGPLTRVPHFESSVVQEFQSL 54

The following BLAST results are available for this feature:
BLAST of Cmc07g0203111 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044534.12.1e-35100.00snRNA-activating protein complex subunit-like [Cucumis melo var. makuwa][more]
TYK17049.13.8e-21100.00snRNA-activating protein complex subunit-like isoform X1 [Cucumis melo var. maku... [more]
XP_016901523.13.8e-21100.00PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo] >XP_0169... [more]
XP_008459095.18.5e-2198.15PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis mel... [more]
TYK29378.18.5e-2198.15snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo var. maku... [more]
BLAST of Cmc07g0203111 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0203111 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TN541.0e-35100.00snRNA-activating protein complex subunit-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S4DZX01.8e-21100.00snRNA-activating protein complex subunit-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5D3D3381.8e-21100.00snRNA-activating protein complex subunit-like isoform X1 OS=Cucumis melo var. ma... [more]
A0A1S3CAL24.1e-2198.15snRNA-activating protein complex subunit-like isoform X3 OS=Cucumis melo OX=3656... [more]
A0A5D3E0W64.1e-2198.15snRNA-activating protein complex subunit-like isoform X3 OS=Cucumis melo var. ma... [more]
BLAST of Cmc07g0203111 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0203111.1Cmc07g0203111.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042795 snRNA transcription by RNA polymerase II
biological_process GO:0042796 snRNA transcription by RNA polymerase III
cellular_component GO:0005634 nucleus
cellular_component GO:0019185 snRNA-activating protein complex
molecular_function GO:0003681 bent DNA binding
molecular_function GO:0001046 core promoter sequence-specific DNA binding
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding