Cmc07g0189031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transcription factor IIIB 90 kDa subunit-like isoform X3
Location	CMiso1.1chr07: 7610702 .. 7613668 (+)
RNA-Seq Expression	Cmc07g0189031
Synteny	Cmc07g0189031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTTTCTGAGATGAAGGTCGAGTCCGTTTCTCGCTCTCCTGCTTGAAGTTACCCTTTAGGCGGCAACGGATCGTCGGCGAAATTCCGAATTGTGTTAAATCACTAACCGGACGAAGCGCGTGTTTTCCTTCTCAGCGGCGAGTAATTTGGCTGCGCTATACACATTCCGATTCTTTGATCAACATCGTAAGTATTCCATCAAGTTATCATGCTTACGATCTTTATTGTTATGTATGGAAATTTAGGATGGATTGTTCTTGGATTCGCCTTTTTGTTTACCGTCAGCTTCTCGTTATTGCGACATATTTAGGTTACATCACCGTTTTTAGTTCTTTCAATAATCTATCTAGATTAGCTTTAAGGTCAAGCAATGATGAATTGAAGTTTTAGTATGTTGGCTTTTTGGTGAAGGCGATCATACTGCATTTTTGTAATTGATTTTTAGTACATGTGTCTCGAAATAGAGTGAAAAATAGATTGTCCGTAGATGGGAAGTTAGTTCTGACGGTCTTGTTCTGTATTATCGAATCTGAAATCATTCTTATAATATATTTGAGAATTTCAGTCTGTTTCTCTTATTTGTTCTTGAGATGATATGTTTCTGGCTAGACTTTTTGTTTGGTTTGTGCGGAAGGCAGTATGTAACTGGATCTTGTAATTTCAGATTTGTTGTTTTTTGTATATTTTGAAAAACTGTGGCTTTCTGGTCCTGGTAGTAGTAGATTGTTATTGTCCATTGTTTAAAAGGATATAACATCCAGCTATTGAAATTGTTTGCATTTTCATATTGGTAAATGCTCTTGTTGTTTTCAGATGAAACCTGCTGATGCATCTTTGTTCAGCATGTTCTCCAGACACAAGGATAAAAGTTCTCCATCCAATGATGATTCAGAGGACCTTGGTGATGTTTTTGATAGTGAGGTACCCGATTAATTTATTTGCATTAGCCTTTGGTTTCTTTTTATTTCTTCTTGTGTTTGTATGGTGTTTTTAACCGTAGTTTTTCACAAATTATAGGTGAACTCTTACCTAAACAACAGGAAGGAGGCACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGTTAAACGCTTCTTGCCCCTCTTAATAACCCTTTGATTGCTTCAAAAAGGTCTACGTTTATACTTAACACTGCAACAAAGTGTTTTATGCTTCCATCATATTTGATTTCTAAATAAATGGTATGCATGGTTTTCAGGACCAAGCAGCTAAGAAACAAGGCCTGAATATCGTTGGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGGTATTTAAGTAACTACAATTCGTGTTAGACAAGAAATCCCTTATCCTGAAAAACATTGGATAGGAGTTTTGCATCTTTACATTTTATAGTATGATTTCTGTTGGAAAAAAGCAGAGGAAAAGGAAAATAGAAGCTCCAATAAACAAGCCTGCTCAAGCCGATACAGAGGAAACTACACATGAAATGCTAATTAAAAAGGTATATCAGTGAGATAAACTAATTAATAGATCAATTGGATGGGAGTGTGATCTCTAATTTTAGCCCAATAGATTCGTTCTAATCTCAATTTTAATTCTATAGGGCCAACTTCCACTGTCTTATTGGTCCTCTATGGACTTGAATGATGTTCTTTTATGAAAATTTTCATTCATATATCTTTTTCCAAATCATTTTCTTAAGAAATGCTTGAGTATAGGGTTCATGAACCATCCACATTATTGTTCCGGGGTCATTTTCATTTCAGTGTGGGGGAAGAGTTTATTTTCATAGTTCCTTGGTTTTGTGCAAGCTAACTTAGTTTGTTTGGTTGCTTTACATCCATTCGTCAGCTTATTTTCCACAATCATTCTTTGCAGAGGCTCAGTTCAAAATTCGACTTTGATGTGTTGGACAAACTCCTCTACGATACAGTATGTTTATCTATGTATATTTTCTTTTTGAAAAAAAAAAAACTATTTATTTCCTCTTTAATGTTTTGGTATTTTCATTTTCGAATGTTACTGTAATTGTATCATCAGTACATGAAAATAATAACTCCCAAACAAAGGATGGAAAGAAAGGAGTTTAACCTTCTTGATTATTTCGATTACACATGATTAGTATAACTGCCTAATAATTCCTGCAGCCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCAAGTTGCAAAGAGAATAGTTCATCTGGTCAAAGCCATTGTATAAACGAGCTTGAAGACGACTTCGAAGACAATCATACCGAGACGGTGTTTGAAGAAAACTTGGACATTGAAGGTGAAGATCCCACAGAAACTTATGGGAATGAGTATTATGATTTCCAAAACGAGGAAGAGTATGGCTACGGATACGATGACTATGGTGGTGAGGAGGAATATTAGTTGATCAGTTTTTTACACAAAAGCTTCTTAATTTTGCCTGGGGTAATATGATGGATTCCGGATAACAACTAGAAGTTAATGAGAGAGCTTTAAATTAATTTCGGATGTTTGGCGACAGACTTAGGAAAATAGCAACAGTCGATGCTTCTCTTTTTAATTTCCTCTATTGGAAGGAGAGGAGCGATTAGGCAAAGTTCCTCCAAGAAGAAAGAAAATCATGACGTCCATATAAAGAGAGGCTTTCAGGCAGAGATACTGAGTTATGTGACAAAAGCAAAAAACTTGGGTGGAGCCTCGGTTGCACCCATTGATACACTGCCATGTGGCAATTTCTTTTTTTTTTTTTCAATTTTAAATATTTTTCCTATGTATAAAAAAGGGATGTATTGGGATTAATCATCCCTCGTGACAAAAAGGGGAGAAGTAAGCATAAATAGGATTATTTTGATGGGTGAAACAAAATCGTGTGTATATTTCAAGAAACGTCGATGAAGTTTGTCAACTCCAATTACTGTCTTGTTATTTTTTAAAAAAATATGTGATTTGTTGTATCTTTTCTATGATCA

mRNA sequence

CCTTTTTCTGAGATGAAGGTCGAGTCCGTTTCTCGCTCTCCTGCTTGAAGTTACCCTTTAGGCGGCAACGGATCGTCGGCGAAATTCCGAATTGTGTTAAATCACTAACCGGACGAAGCGCGTGTTTTCCTTCTCAGCGGCGAGTAATTTGGCTGCGCTATACACATTCCGATTCTTTGATCAACATCATGAAACCTGCTGATGCATCTTTGTTCAGCATGTTCTCCAGACACAAGGATAAAAGTTCTCCATCCAATGATGATTCAGAGGACCTTGGTGATGTTTTTGATAGTGAGGTGAACTCTTACCTAAACAACAGGAAGGAGGCACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGACCAAGCAGCTAAGAAACAAGGCCTGAATATCGTTGGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGAAAAGGAAAATAGAAGCTCCAATAAACAAGCCTGCTCAAGCCGATACAGAGGAAACTACACATGAAATGCTAATTAAAAAGAGGCTCAGTTCAAAATTCGACTTTGATGTGTTGGACAAACTCCTCTACGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCAAGTTGCAAAGAGAATAGTTCATCTGGTCAAAGCCATTGTATAAACGAGCTTGAAGACGACTTCGAAGACAATCATACCGAGACGGTGTTTGAAGAAAACTTGGACATTGAAGGTGAAGATCCCACAGAAACTTATGGGAATGAGTATTATGATTTCCAAAACGAGGAAGAGTATGGCTACGGATACGATGACTATGGTGGTGAGGAGGAATATTAGTTGATCAGTTTTTTACACAAAAGCTTCTTAATTTTGCCTGGGGTAATATGATGGATTCCGGATAACAACTAGAAGTTAATGAGAGAGCTTTAAATTAATTTCGGATGTTTGGCGACAGACTTAGGAAAATAGCAACAGTCGATGCTTCTCTTTTTAATTTCCTCTATTGGAAGGAGAGGAGCGATTAGGCAAAGTTCCTCCAAGAAGAAAGAAAATCATGACGTCCATATAAAGAGAGGCTTTCAGGCAGAGATACTGAGTTATGTGACAAAAGCAAAAAACTTGGGTGGAGCCTCGGTTGCACCCATTGATACACTGCCATGTGGCAATTTCTTTTTTTTTTTTTCAATTTTAAATATTTTTCCTATGTATAAAAAAGGGATGTATTGGGATTAATCATCCCTCGTGACAAAAAGGGGAGAAGTAAGCATAAATAGGATTATTTTGATGGGTGAAACAAAATCGTGTGTATATTTCAAGAAACGTCGATGAAGTTTGTCAACTCCAATTACTGTCTTGTTATTTTTTAAAAAAATATGTGATTTGTTGTATCTTTTCTATGATCA

Coding sequence (CDS)

ATGTTCTCCAGACACAAGGATAAAAGTTCTCCATCCAATGATGATTCAGAGGACCTTGGTGATGTTTTTGATAGTGAGGTGAACTCTTACCTAAACAACAGGAAGGAGGCACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGACCAAGCAGCTAAGAAACAAGGCCTGAATATCGTTGGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGAAAAGGAAAATAGAAGCTCCAATAAACAAGCCTGCTCAAGCCGATACAGAGGAAACTACACATGAAATGCTAATTAAAAAGAGGCTCAGTTCAAAATTCGACTTTGATGTGTTGGACAAACTCCTCTACGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCAAGTTGCAAAGAGAATAGTTCATCTGGTCAAAGCCATTGTATAAACGAGCTTGAAGACGACTTCGAAGACAATCATACCGAGACGGTGTTTGAAGAAAACTTGGACATTGAAGGTGAAGATCCCACAGAAACTTATGGGAATGAGTATTATGATTTCCAAAACGAGGAAGAGTATGGCTACGGATACGATGACTATGGTGGTGAGGAGGAATATTAG

Protein sequence

MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY

Homology

[Close]

BLAST of Cmc07g0189031 vs. NCBI nr
Match: XP_008444162.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31660.1 transcription factor IIIB 90 kDa subunit-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 1.5e-106
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY
Sbjct: 71  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 130

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 180
           DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG
Sbjct: 131 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 190

Query: 181 NEYYDFQNEEEYGYGYDDYGGEEEY 206
           NEYYDFQNEEEYGYGYDDYGGEEEY
Sbjct: 191 NEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Cmc07g0189031 vs. NCBI nr
Match: XP_016899849.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo])

HSP 1 Score: 391.7 bits (1005), Expect = 3.8e-105
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKK-RKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLL 120
           GLNIVGAAAVVKKSKK RKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLL
Sbjct: 71  GLNIVGAAAVVKKSKKQRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLL 130

Query: 121 YDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETY 180
           YDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETY
Sbjct: 131 YDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETY 190

Query: 181 GNEYYDFQNEEEYGYGYDDYGGEEEY 206
           GNEYYDFQNEEEYGYGYDDYGGEEEY
Sbjct: 191 GNEYYDFQNEEEYGYGYDDYGGEEEY 216

[Close]

BLAST of Cmc07g0189031 vs. NCBI nr
Match: XP_004142699.1 (uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 9.4e-88
Identity = 184/227 (81.06%), Postives = 193/227 (85.02%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MF +HKDKSSPS+DDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLN+VGA+AVVKKSKKR+RK EAPIN PAQADT  TT EM IKKRLSSKF+FDVLDKL  
Sbjct: 71  GLNVVGASAVVKKSKKRQRKTEAPINMPAQADT-GTTREMQIKKRLSSKFNFDVLDKLFS 130

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDD---------------------FEDNH 180
           DTPAPDSSEKQGASSCKENSSSGQ HC NELEDD                     FEDNH
Sbjct: 131 DTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNELEDNFEDNH 190

Query: 181 TETVFEENLDIEG-EDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 206
           TET+FEEN DIEG EDPTETYGNEYYDFQ+EEEYGYGY+DYGGEEEY
Sbjct: 191 TETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEEY 236

[Close]

BLAST of Cmc07g0189031 vs. NCBI nr
Match: KAE8649624.1 (hypothetical protein Csa_012863 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 9.4e-88
Identity = 184/227 (81.06%), Postives = 193/227 (85.02%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MF +HKDKSSPS+DDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 150 MFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 209

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLN+VGA+AVVKKSKKR+RK EAPIN PAQADT  TT EM IKKRLSSKF+FDVLDKL  
Sbjct: 210 GLNVVGASAVVKKSKKRQRKTEAPINMPAQADT-GTTREMQIKKRLSSKFNFDVLDKLFS 269

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDD---------------------FEDNH 180
           DTPAPDSSEKQGASSCKENSSSGQ HC NELEDD                     FEDNH
Sbjct: 270 DTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNELEDNFEDNH 329

Query: 181 TETVFEENLDIEG-EDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 206
           TET+FEEN DIEG EDPTETYGNEYYDFQ+EEEYGYGY+DYGGEEEY
Sbjct: 330 TETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEEY 375

[Close]

BLAST of Cmc07g0189031 vs. NCBI nr
Match: XP_008444163.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X3 [Cucumis melo])

HSP 1 Score: 329.7 bits (844), Expect = 1.8e-86
Identity = 177/205 (86.34%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLNIVGAAAVVKKS                            KKRLSSKFDFDVLDKLLY
Sbjct: 71  GLNIVGAAAVVKKS----------------------------KKRLSSKFDFDVLDKLLY 130

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 180
           DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG
Sbjct: 131 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 187

Query: 181 NEYYDFQNEEEYGYGYDDYGGEEEY 206
           NEYYDFQNEEEYGYGYDDYGGEEEY
Sbjct: 191 NEYYDFQNEEEYGYGYDDYGGEEEY 187

[Close]

BLAST of Cmc07g0189031 vs. ExPASy Swiss-Prot
Match: Q9P6R0 (Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brf1 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 5.1e-04
Identity = 32/107 (29.91%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 13  NDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQGLNIVGAAAVVK 72
           +++   L DV D E+   L ++ E   K  +W ++NKDYL ++ AK   L       +V+
Sbjct: 380 SEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAKNLKLQEDLKKGIVR 439

Query: 73  KSKKRKRKIEAPINKPAQADT-EETTHEMLIKKRLSSKFDFDVLDKL 119
           + +KR+R           ADT  E+  EM+ ++  S K +++ LD L
Sbjct: 440 QPRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDML 486

[Close]

BLAST of Cmc07g0189031 vs. ExPASy TrEMBL
Match: A0A5D3E7S6 (Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00100 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.5e-107
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY
Sbjct: 71  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 130

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 180
           DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG
Sbjct: 131 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 190

Query: 181 NEYYDFQNEEEYGYGYDDYGGEEEY 206
           NEYYDFQNEEEYGYGYDDYGGEEEY
Sbjct: 191 NEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Cmc07g0189031 vs. ExPASy TrEMBL
Match: A0A1S3B993 (uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.5e-107
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY
Sbjct: 71  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 130

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 180
           DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG
Sbjct: 131 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 190

Query: 181 NEYYDFQNEEEYGYGYDDYGGEEEY 206
           NEYYDFQNEEEYGYGYDDYGGEEEY
Sbjct: 191 NEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Cmc07g0189031 vs. ExPASy TrEMBL
Match: A0A1S4DV37 (uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKK-RKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLL 120
           GLNIVGAAAVVKKSKK RKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLL
Sbjct: 71  GLNIVGAAAVVKKSKKQRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLL 130

Query: 121 YDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETY 180
           YDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETY
Sbjct: 131 YDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETY 190

Query: 181 GNEYYDFQNEEEYGYGYDDYGGEEEY 206
           GNEYYDFQNEEEYGYGYDDYGGEEEY
Sbjct: 191 GNEYYDFQNEEEYGYGYDDYGGEEEY 216

[Close]

BLAST of Cmc07g0189031 vs. ExPASy TrEMBL
Match: A0A0A0L0J7 (BRF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G363410 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.6e-88
Identity = 184/227 (81.06%), Postives = 193/227 (85.02%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MF +HKDKSSPS+DDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 71  MFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 130

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLN+VGA+AVVKKSKKR+RK EAPIN PAQADT  TT EM IKKRLSSKF+FDVLDKL  
Sbjct: 131 GLNVVGASAVVKKSKKRQRKTEAPINMPAQADT-GTTREMQIKKRLSSKFNFDVLDKLFS 190

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDD---------------------FEDNH 180
           DTPAPDSSEKQGASSCKENSSSGQ HC NELEDD                     FEDNH
Sbjct: 191 DTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNELEDNFEDNH 250

Query: 181 TETVFEENLDIEG-EDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 206
           TET+FEEN DIEG EDPTETYGNEYYDFQ+EEEYGYGY+DYGGEEEY
Sbjct: 251 TETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEEY 296

[Close]

BLAST of Cmc07g0189031 vs. ExPASy TrEMBL
Match: A0A1S3B9Q2 (uncharacterized protein LOC103487591 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.6e-87
Identity = 177/205 (86.34%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 1   MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 60
           MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ
Sbjct: 11  MFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQ 70

Query: 61  GLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKFDFDVLDKLLY 120
           GLNIVGAAAVVKKS                            KKRLSSKFDFDVLDKLLY
Sbjct: 71  GLNIVGAAAVVKKS----------------------------KKRLSSKFDFDVLDKLLY 130

Query: 121 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 180
           DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG
Sbjct: 131 DTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDIEGEDPTETYG 187

Query: 181 NEYYDFQNEEEYGYGYDDYGGEEEY 206
           NEYYDFQNEEEYGYGYDDYGGEEEY
Sbjct: 191 NEYYDFQNEEEYGYGYDDYGGEEEY 187

[Close]

BLAST of Cmc07g0189031 vs. TAIR 10
Match: AT3G09360.1 (Cyclin/Brf1-like TBP-binding protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 71/223 (31.84%), Postives = 108/223 (48.43%), Query Frame = 0


Query: 7   DKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKKQGLNIVG 66
           ++ + ++D+S++  D+ D EVN Y+NN +E HYK I W ++NKDYL++QAAK+  L    
Sbjct: 387 EEHADTSDESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAAS 446

Query: 67  AA----------------------AVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKK 126
            A                      A   + +K+++K E   N    A   E     L KK
Sbjct: 447 EALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKK 506

Query: 127 RLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVF 186
           RLSS  ++DVL+  L+DT AP+ S K+         S  ++    + E++ E    E   
Sbjct: 507 RLSSVINYDVLES-LFDTSAPEKSPKR---------SKTETDIEKKKEENKEMKSNEHEN 566

Query: 187 EENLDIEGEDPTETYGNEY---YDFQNEEEYGYGYDDYGGEEE 205
            EN D + ED  E     Y    DFQN E++   Y++   EEE
Sbjct: 567 GENEDEDEEDEEEGNVESYDMKTDFQNGEKF---YEEDEEEEE 596

The following BLAST results are available for this feature:

BLAST of Cmc07g0189031 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444162.1	1.5e-106	100.00	PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31...	[more]
XP_016899849.1	3.8e-105	99.51	PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo]	[more]
XP_004142699.1	9.4e-88	81.06	uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus]	[more]
KAE8649624.1	9.4e-88	81.06	hypothetical protein Csa_012863 [Cucumis sativus]	[more]
XP_008444163.1	1.8e-86	86.34	PREDICTED: uncharacterized protein LOC103487591 isoform X3 [Cucumis melo]	[more]

BLAST of Cmc07g0189031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9P6R0	5.1e-04	29.91	Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Cmc07g0189031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E7S6	7.5e-107	100.00	Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. ma...	[more]
A0A1S3B993	7.5e-107	100.00	uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DV37	1.8e-105	99.51	uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L0J7	4.6e-88	81.06	BRF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G363410 PE=4 S...	[more]
A0A1S3B9Q2	8.6e-87	86.34	uncharacterized protein LOC103487591 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cmc07g0189031 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09360.1	1.1e-14	31.84	Cyclin/Brf1-like TBP-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.650	Single helix bin	coord: 12..61 e-value: 4.9E-17 score: 63.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..148
IPR011665	Brf1, TBP-binding domain	PFAM	PF07741	BRF1	coord: 21..118 e-value: 1.2E-19 score: 70.5
IPR029529	Transcription factor IIIB subunit Brf1	PANTHER	PTHR11618:SF4	TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT	coord: 6..123
IPR000812	Transcription factor TFIIB	PANTHER	PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 6..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0189031.1	Cmc07g0189031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0070897	transcription preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0016020	membrane
cellular_component	GO:0000126	transcription factor TFIIIB complex
molecular_function	GO:0000995	RNA polymerase III general transcription initiation factor activity