Cmc06g0177081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0177081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	HMA domain-containing protein
Location	CMiso1.1chr06: 33886981 .. 33889546 (+)
RNA-Seq Expression	Cmc06g0177081
Synteny	Cmc06g0177081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTCAAACAAAGGGAACCTAATTAGATTAGATTAAAGATTAGGCCAATAAATTAAAGCAAAAGAAAAAAAAAAAAGAGTGTATTTAATAAGCTTTTCTCCTAAGAACTTAGTTAGGAATGAATCCTTTGGAAACATCCATGGCTGCCTGAGAGAAAATTTAGAAAGATCAAGAAACCCCAAAAACTTTGAAAAACGAAAGGAAGAAACAAAGTTAGGATTCTCCCCCACCTGTTTCACCAAGCAGAAACCTCCATGGCTGCCTAAACACAAAGACAAAGAAGAAAAATAGAAGCCAAAAATGAAGCAATCTTTGTTATTTTCTGAGAATCTAACACCCCCCAAGGTAACATTTCTTGATAAACTTATTTTTCAGGGTTTGAAAATGCATGTTTTATGCTACAATATGTATATACATATATATATATATATATATGGAATATATACAGTAATGTTTTTTCTTTTAAATTTTTGTTATATAGTTTGAAGTGATTATTATAAATGCAAATATGAGTTGCAATGGATGTCGCCAAAGAGTTTCTCAAATTGTCTCTAAAATGTCAGGTTAGTTCATTTCGTCATTTTTATTTATTCGTCTTCTTCGCTTCTTTTCCATCCCTAAAAATTCAATAGTTACAATTACGTTCCCAAACTTTCTATATAACTTTGAATCCTAGAACTTTCTCGAGTTTTAAAATTTGGTATTGAAAAATTATAAGAATTGGAACTCTAAAGTAGTTACAATTTCTTTAAAAATGTAAGTTTAACTTATAAATTCGAGGTCCGATTTTCTACGCTATAAAAAAAATTGAGGGTACAATTGCAATCATCCATCGTACTTTAGAATTTAGATTTGCAATTTACCTTAATTTAAATATAATTTCCCTTTCTAACAAGATCTGAGATCTAATTAAATAATTGAGGCCATATGCTTTTTTTTTTATTTAAAAAAGTATAATCATCATTCGTCATATACTCAGTTTATATGTATAATTAAAAGCATAATTTTAATGTACTACGATATTTTTGGCACATAGATTTGTTTAGTCGTCTTTTGTTATGATTTGATTTTAATAAAAAAAAATATAAATGAGGTGAAAGATTCAAATTTCAAGCCCTCCGATCAAGAGGGTATTTTAATTCCGTATTAACCTTATATTAGTGATTTAATCGCTTCATATGTGGTATACTAATTCAATTAGATTTTGTATTATTGATAGTTGTACTTATGATTAAACATAGAAACATTTTCAAATACATTAAAATATTTACAAAATATAATAAATATTTCAATGAACTACAATAGATCGTTCTAAATTACTATCGTAATAAAAATGCACAAATAGTAGACCATAATACTTTACTATATTATTTAAAATAATTTTCCATAAAAACATAGACTTAATTGAAATATTTTATAAAGTTTAAAATTAAAATTAAAACTTATGGACTTAATTGAAATATTGTATAAAATTTAAAATTACACGAAAACATGAAAGAAATCGAGCCTTTTAACTCTTTATTTAATAAGACCCGTGCTACGCTTTGTTATATAATATTCTTAATTAGAACTATATCACATATAATATGTATAACTTTACCTTATTCTATAGCCATTTTTAATTAGAACTTACAGTCCTTTCCAATCAGAACTTTCACATATGTTCTTTCGAAAAGATAAAGTTGATACATACATTTCATATGTGTATGACTACATAACATATAATTGACGTTACTTTAATATATCCATATGAAATATACAATTAAGAAATATAATTAAACATATCGATATAAAATATACAACTAAGAAATATAATTGGGAGTTGAGAAATTTGAAATTTCTATCCTAACTATTGTATTTACCCTATAAGCTTAATGTCTAAACTTAATTTTGAGACTAAAGTCATTTCCTTTGTAGAATGAAAAGGTTACAAAATCTCGAAAATGATATGATCTATGGTTAGATGATGACATGGATGACTAAGAGTAGAGGCTTGGTGATTCTTTAAGAATTATTGAGATAATAGACAATATCTCAAATCAAGGCTTGAGCTATTCATGATAGGTTTATAAAAAATGAACATAATCTAGACAAAAAGTGACACACCTCTATGGTAAATAAACAATATCTTTCCACTTTTACTTTTACATATCAGTTATTTTCTCTTTTAAACTATATAATATATATATATCAAGACTGTCTAAACAATCTATTTTTTTTGTTAATATGCAGAATTAGTGGAGTTGACTATAGATGTGACAAAAAAACAAGTGATAGTTAAAGGAAATGTCAAATGCCAAAGCAAGAATCAAGAAAATACTATTCATTCCCAAATGAAGAAGTGTGATTCTTTAATAACCATCTCCCCCCATTTTTCAAATAATTGCTTTTAAATTCATTCTTTTCTAGTAACCAACATATCTATATACAATTTTTGTTTATGCATTTATTTGTAAGTCTAATTTGAACCACAAGCTTATGTTCTTCACTTAATTAGAATGATCAATCGACCTTGTAAAATTTCCAAGTCAAATAATTTTACAACTTACCTCCCATAAGCTTTATT

mRNA sequence

TAGTCAAACAAAGGGAACCTAATTAGATTAGATTAAAGATTAGGCCAATAAATTAAAGCAAAAGAAAAAAAAAAAAGAGTGTATTTAATAAGCTTTTCTCCTAAGAACTTAGTTAGGAATGAATCCTTTGGAAACATCCATGGCTGCCTGAGAGAAAATTTAGAAAGATCAAGAAACCCCAAAAACTTTGAAAAACGAAAGGAAGAAACAAAGTTAGGATTCTCCCCCACCTGTTTCACCAAGCAGAAACCTCCATGGCTGCCTAAACACAAAGACAAAGAAGAAAAATAGAAGCCAAAAATGAAGCAATCTTTGTTATTTTCTGAGAATCTAACACCCCCCAAGTTTGAAGTGATTATTATAAATGCAAATATGAGTTGCAATGGATGTCGCCAAAGAGTTTCTCAAATTGTCTCTAAAATGTCAGAATTAGTGGAGTTGACTATAGATGTGACAAAAAAACAAGTGATAGTTAAAGGAAATGTCAAATGCCAAAGCAAGAATCAAGAAAATACTATTCATTCCCAAATGAAGAAGTGTGATTCTTTAATAACCATCTCCCCCCATTTTTCAAATAATTGCTTTTAAATTCATTCTTTTCTAGTAACCAACATATCTATATACAATTTTTGTTTATGCATTTATTTGTAAGTCTAATTTGAACCACAAGCTTATGTTCTTCACTTAATTAGAATGATCAATCGACCTTGTAAAATTTCCAAGTCAAATAATTTTACAACTTACCTCCCATAAGCTTTATT

Coding sequence (CDS)

ATGAAGCAATCTTTGTTATTTTCTGAGAATCTAACACCCCCCAAGTTTGAAGTGATTATTATAAATGCAAATATGAGTTGCAATGGATGTCGCCAAAGAGTTTCTCAAATTGTCTCTAAAATGTCAGAATTAGTGGAGTTGACTATAGATGTGACAAAAAAACAAGTGATAGTTAAAGGAAATGTCAAATGCCAAAGCAAGAATCAAGAAAATACTATTCATTCCCAAATGAAGAAGTGTGATTCTTTAATAACCATCTCCCCCCATTTTTCAAATAATTGCTTTTAA

Protein sequence

MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKGNVKCQSKNQENTIHSQMKKCDSLITISPHFSNNCF

Homology

[Close]

BLAST of Cmc06g0177081 vs. NCBI nr
Match: KGN55871.1 (hypothetical protein Csa_010412 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          MKQSLLFSENLTPPKFEVI+INANMSCNGCRQRVSQIVSKMSEL ELTIDVTKKQVIVKG
Sbjct: 2  MKQSLLFSENLTPPKFEVIVINANMSCNGCRQRVSQIVSKMSELAELTIDVTKKQVIVKG 61

Query: 61 NVKCQSKNQENTIHSQMKKCDSLITISPHFSNNCF 96
          NVKCQSKNQENTIHSQM  CDSL + SPHFSN+CF
Sbjct: 62 NVKCQSKNQENTIHSQMNNCDSLKSPSPHFSNSCF 96

[Close]

BLAST of Cmc06g0177081 vs. NCBI nr
Match: XP_038903445.1 (copper transport protein ATX1 [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          M+QSLLFSENLTPP F+VI+INANMSC GCRQRVSQIV KMSELVE TIDVTK+QVIVKG
Sbjct: 1  MEQSLLFSENLTPPSFQVIVINANMSCKGCRQRVSQIVCKMSELVEFTIDVTKRQVIVKG 60

Query: 61 NVKCQSKNQENTIHSQMKKCDSLITISPHFSNNCF 96
          NVKCQSKN+ENT    MKKC+SL + SP FSN CF
Sbjct: 61 NVKCQSKNEENT----MKKCNSLKSPSPQFSNKCF 91

[Close]

BLAST of Cmc06g0177081 vs. NCBI nr
Match: XP_023553457.1 (uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          M+QSLLFSE+LTPP F+VI+INANMSCNGCRQRVSQ++SK+SELVE TIDVTKKQV+VKG
Sbjct: 1  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKG 60

Query: 61 NVKCQSK-NQENTIHSQMKKCDSL--ITISPHFSNNCF 96
          NVK Q K ++EN +HSQ     SL   +++  FSNNCF
Sbjct: 61 NVKFQGKIHEENGVHSQTYNSKSLKSQSLTHQFSNNCF 98

[Close]

BLAST of Cmc06g0177081 vs. NCBI nr
Match: XP_022965234.1 (uncharacterized protein LOC111465148 isoform X1 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-26
Identity = 67/98 (68.37%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          M+QSLLFSE+LTPP F+VI+INANMSCNGCRQRVSQ++SK+SELVE TIDVTKKQV+VKG
Sbjct: 1  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKG 60

Query: 61 NVKCQSK-NQENTIHSQMKKCDSL--ITISPHFSNNCF 96
          NVK Q K ++E++IHSQ    +SL   ++S  +SN+CF
Sbjct: 61 NVKFQGKIHEEDSIHSQTYNSNSLKSQSLSHQYSNDCF 98

[Close]

BLAST of Cmc06g0177081 vs. NCBI nr
Match: XP_022154033.1 (uncharacterized protein LOC111021388 isoform X1 [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 6.2e-26
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          MKQSLLF ENLTPP F+VI+INANM CN CRQRVSQ++SKMSEL+E+TIDVTK QV+VKG
Sbjct: 1  MKQSLLFYENLTPPLFQVIVINANMGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKG 60

Query: 61 NVKCQSKNQENTIHSQMKKCDSLITISPHFSNNCF 96
          N+K QSK +E  +H    K  SL +IS   SN+CF
Sbjct: 61 NIKFQSKKEEINVHYSQVKGGSLKSISLELSNHCF 95

[Close]

BLAST of Cmc06g0177081 vs. ExPASy TrEMBL
Match: A0A0A0L6W5 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          MKQSLLFSENLTPPKFEVI+INANMSCNGCRQRVSQIVSKMSEL ELTIDVTKKQVIVKG
Sbjct: 2  MKQSLLFSENLTPPKFEVIVINANMSCNGCRQRVSQIVSKMSELAELTIDVTKKQVIVKG 61

Query: 61 NVKCQSKNQENTIHSQMKKCDSLITISPHFSNNCF 96
          NVKCQSKNQENTIHSQM  CDSL + SPHFSN+CF
Sbjct: 62 NVKCQSKNQENTIHSQMNNCDSLKSPSPHFSNSCF 96

[Close]

BLAST of Cmc06g0177081 vs. ExPASy TrEMBL
Match: A0A6J1HQF9 (uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 67/98 (68.37%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          M+QSLLFSE+LTPP F+VI+INANMSCNGCRQRVSQ++SK+SELVE TIDVTKKQV+VKG
Sbjct: 1  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKG 60

Query: 61 NVKCQSK-NQENTIHSQMKKCDSL--ITISPHFSNNCF 96
          NVK Q K ++E++IHSQ    +SL   ++S  +SN+CF
Sbjct: 61 NVKFQGKIHEEDSIHSQTYNSNSLKSQSLSHQYSNDCF 98

[Close]

BLAST of Cmc06g0177081 vs. ExPASy TrEMBL
Match: A0A6J1DJ58 (uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-26
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          MKQSLLF ENLTPP F+VI+INANM CN CRQRVSQ++SKMSEL+E+TIDVTK QV+VKG
Sbjct: 1  MKQSLLFYENLTPPLFQVIVINANMGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKG 60

Query: 61 NVKCQSKNQENTIHSQMKKCDSLITISPHFSNNCF 96
          N+K QSK +E  +H    K  SL +IS   SN+CF
Sbjct: 61 NIKFQSKKEEINVHYSQVKGGSLKSISLELSNHCF 95

[Close]

BLAST of Cmc06g0177081 vs. ExPASy TrEMBL
Match: A0A6J1HN60 (uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.8e-24
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          M+QSLLFSE+LTPP   VI+INANMSCNGCRQRVSQ++SK+SELVE TIDVTKKQV+VKG
Sbjct: 1  MEQSLLFSEDLTPP--SVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKG 60

Query: 61 NVKCQSK-NQENTIHSQMKKCDSL--ITISPHFSNNCF 96
          NVK Q K ++E++IHSQ    +SL   ++S  +SN+CF
Sbjct: 61 NVKFQGKIHEEDSIHSQTYNSNSLKSQSLSHQYSNDCF 96

[Close]

BLAST of Cmc06g0177081 vs. ExPASy TrEMBL
Match: A0A6J1DKV3 (uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MKQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKG 60
          MKQSLLF ENLTPP   VI+INANM CN CRQRVSQ++SKMSEL+E+TIDVTK QV+VKG
Sbjct: 1  MKQSLLFYENLTPPL--VIVINANMGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKG 60

Query: 61 NVKCQSKNQENTIHSQMKKCDSLITISPHFSNNCF 96
          N+K QSK +E  +H    K  SL +IS   SN+CF
Sbjct: 61 NIKFQSKKEEINVHYSQVKGGSLKSISLELSNHCF 93

[Close]

BLAST of Cmc06g0177081 vs. TAIR 10
Match: AT2G35730.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 30/78 (38.46%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 2  KQSLLFSENLTPPKFEVIIINANMSCNGCRQRVSQIVSKMSELVELTIDVTKKQVIVKGN 61
          +++L+  E L+ P F+VI INA++ C  C+ RVS+IVSKM+ + E  +D+ KK V+ +G+
Sbjct: 8  RRTLMLCEKLSLPSFQVIEINADVGCVACQDRVSKIVSKMTGIEEYVVDLKKKLVMARGD 67

Query: 62 VK---CQSKNQENTIHSQ 77
           +     S+ Q   + SQ
Sbjct: 68 FRPRLVSSQQQVKDVVSQ 85

The following BLAST results are available for this feature:

BLAST of Cmc06g0177081 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55871.1	2.6e-40	91.58	hypothetical protein Csa_010412 [Cucumis sativus]	[more]
XP_038903445.1	2.6e-32	80.00	copper transport protein ATX1 [Benincasa hispida]	[more]
XP_023553457.1	1.2e-26	69.39	uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo]	[more]
XP_022965234.1	3.6e-26	68.37	uncharacterized protein LOC111465148 isoform X1 [Cucurbita maxima]	[more]
XP_022154033.1	6.2e-26	67.37	uncharacterized protein LOC111021388 isoform X1 [Momordica charantia]	[more]

BLAST of Cmc06g0177081 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0177081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6W5	1.3e-40	91.58	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV...	[more]
A0A6J1HQF9	1.8e-26	68.37	uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DJ58	3.0e-26	67.37	uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HN60	4.8e-24	67.35	uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DKV3	1.1e-23	66.32	uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cmc06g0177081 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35730.1	2.1e-08	38.46	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 24..63 e-value: 1.4E-6 score: 28.6
None	No IPR available	GENE3D	3.30.70.100		coord: 16..83 e-value: 3.0E-7 score: 32.5
IPR017969	Heavy-metal-associated, conserved site	PROSITE	PS01047	HMA_1	coord: 22..51
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 17..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0177081.1	Cmc06g0177081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding