Cmc06g0172491 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0172491
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 28526669 .. 28527351 (-)
RNA-Seq Expression	Cmc06g0172491
Synteny	Cmc06g0172491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAAACTCCATTTGAAGCTTGGTATGACAAAAAACCCAATGTAAGTCATTTAAGAGTTTTTTGTTGTATTTCCTATGCTTTGTTATCTTCTCAAGTTCATCAAAAACTTGATAAAAAATCTAAAAAATGCATTTTTGTTGGTTATTGTACTCAATTCAAAGCATATAGATTGCATAACCCTTTTAATGACAAAATTCTCACAAAAAGAGATGTAGTGTTTGATGAGAGTGCTAGTTGGGATTGGCAAAATAATGAAGAATATGTTTCTCTAGTGCATGGTGAATTGACAAATGATGGAGAACAAACTGTGGTTGAATCCTCAATGGAAACACCTACCTCAACACCTTCGTCGGGTGCTCCATCAACATCACAAAGTTACCACTGTCTATCAAGTAATGATGAAACATCAGATGAACTGCCATCTCAGAGGTTTCGGTCCATGGAAGATATCTATAATTCTTCTCAATTTGCTCTTATGGTTTCTGACCCAGTGTGTTATGATGAGGCAGCAGGCAAAGAAGAATGACAGCTATTGAGAAGAATGAAACATGGAAAATGGTAGACTTATCGGAAGGAAAAGATGCAATTGGCTTGAAGTGGGTATATAAGACGAAATTTGTTGCAGATGGGAGTTTAGAGAAGCACAAAGCTCGTCTTGTGGCAAATGGATATGCATAG

mRNA sequence

ATGAATAAAACTCCATTTGAAGCTTGGTATGACAAAAAACCCAATGTAAGTCATTTAAGAGTTTTTTGTTGTATTTCCTATGCTTTGTTATCTTCTCAAGTTCATCAAAAACTTGATAAAAAATCTAAAAAATGCATTTTTGTTGGTTATTGTACTCAATTCAAAGCATATAGATTGCATAACCCTTTTAATGACAAAATTCTCACAAAAAGAGATGTAGTGTTTGATGAGAGTGCTAGTTGGGATTGGCAAAATAATGAAGAATATGTTTCTCTAGTGCATGGTGAATTGACAAATGATGGAGAACAAACTGTGGTTGAATCCTCAATGGAAACACCTACCTCAACACCTTCGTCGGGTGCTCCATCAACATCACAAAGTTACCACTGTCTATCAAGTAATGATGAAACATCAGATGAACTGCCATCTCAGAGGCAAAGAAGAATGACAGCTATTGAGAAGAATGAAACATGGAAAATGGTAGACTTATCGGAAGGAAAAGATGCAATTGGCTTGAAGTGGGTATATAAGACGAAATTTGTTGCAGATGGGAGTTTAGAGAAGCACAAAGCTCGTCTTGTGGCAAATGGATATGCATAG

Coding sequence (CDS)

ATGAATAAAACTCCATTTGAAGCTTGGTATGACAAAAAACCCAATGTAAGTCATTTAAGAGTTTTTTGTTGTATTTCCTATGCTTTGTTATCTTCTCAAGTTCATCAAAAACTTGATAAAAAATCTAAAAAATGCATTTTTGTTGGTTATTGTACTCAATTCAAAGCATATAGATTGCATAACCCTTTTAATGACAAAATTCTCACAAAAAGAGATGTAGTGTTTGATGAGAGTGCTAGTTGGGATTGGCAAAATAATGAAGAATATGTTTCTCTAGTGCATGGTGAATTGACAAATGATGGAGAACAAACTGTGGTTGAATCCTCAATGGAAACACCTACCTCAACACCTTCGTCGGGTGCTCCATCAACATCACAAAGTTACCACTGTCTATCAAGTAATGATGAAACATCAGATGAACTGCCATCTCAGAGGCAAAGAAGAATGACAGCTATTGAGAAGAATGAAACATGGAAAATGGTAGACTTATCGGAAGGAAAAGATGCAATTGGCTTGAAGTGGGTATATAAGACGAAATTTGTTGCAGATGGGAGTTTAGAGAAGCACAAAGCTCGTCTTGTGGCAAATGGATATGCATAG

Protein sequence

MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLHNPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSGAPSTSQSYHCLSSNDETSDELPSQRQRRMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA

Homology

[Close]

BLAST of Cmc06g0172491 vs. NCBI nr
Match: TYK00906.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.3e-78
Identity = 159/228 (69.74%), Postives = 171/228 (75.00%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           MNKTPFE WY KKPNV+HLRVF CISYAL+ SQV QKLDKKS+KCIFVGYCTQ KAYRL+
Sbjct: 322 MNKTPFEVWYGKKPNVNHLRVFGCISYALVPSQVRQKLDKKSEKCIFVGYCTQSKAYRLY 381

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSG 120
           NP N KILT+RDVVFDESASWDW+N+EEYVSLV GELTNDGEQTVVESSMETPTSTP S 
Sbjct: 382 NPLNGKILTRRDVVFDESASWDWKNSEEYVSLVDGELTNDGEQTVVESSMETPTSTPPSS 441

Query: 121 APSTSQSYHCLSSNDE---------------------------TSDELPSQR--QRRMTA 180
            PST QSYH  SSNDE                           T   +  Q+  +  M A
Sbjct: 442 TPSTPQSYHSSSSNDEHQMNYHLRGFGPWKISIILLNLLLWFLTQCLMMRQQAMKEEMAA 501

Query: 181 IEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA 200
           IEKN TWKMVDL EGK+AIGLKWVYK+KF ADGSLEKHKA LVA GYA
Sbjct: 502 IEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSLEKHKAHLVAKGYA 549

[Close]

BLAST of Cmc06g0172491 vs. NCBI nr
Match: KAA0033341.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-67
Identity = 148/235 (62.98%), Postives = 157/235 (66.81%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           MNKTPFEAWY KKPN                    + L KKS+KCIFV YCTQ KAYRL+
Sbjct: 261 MNKTPFEAWYGKKPNFV------------------KNLIKKSEKCIFVDYCTQSKAYRLY 320

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSG 120
           NP N KILT+RDVVFDESASWDW+++EEYVSLV GELTNDGEQTVVESSMET TSTP S 
Sbjct: 321 NPLNGKILTRRDVVFDESASWDWKSSEEYVSLVDGELTNDGEQTVVESSMETSTSTPPSS 380

Query: 121 APSTSQSYHCLSSNDETSDELPSQRQR--------------------------------- 180
            PST QSYH  SSNDETSDELPSQR R                                 
Sbjct: 381 TPSTPQSYHSSSSNDETSDELPSQRFRSMEDIYNSSLFALMVSDPVCYDEAANKEEWQQV 440

Query: 181 ---RMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA 200
               M AIEKN TWK+VDL EGK+AIGLKWVYKTKF ADGSLEKHKARLVA GYA
Sbjct: 441 MKEEMKAIEKNGTWKIVDLLEGKNAIGLKWVYKTKFAADGSLEKHKARLVAKGYA 477

[Close]

BLAST of Cmc06g0172491 vs. NCBI nr
Match: KAA0050265.1 (integrase [Cucumis melo var. makuwa] >TYJ98143.1 integrase [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-63
Identity = 127/161 (78.88%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           MNKTPFEAWY KKP VSHLRVF CISYAL+ SQV QKLDKKS+KCIFVGYCTQ KAYRLH
Sbjct: 136 MNKTPFEAWYGKKPKVSHLRVFGCISYALVPSQVRQKLDKKSEKCIFVGYCTQSKAYRLH 195

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSG 120
           NP N KIL +RDVVFDESASWDW+NNEEYVSLV GELTNDGEQTVVESSMET TSTP S 
Sbjct: 196 NPLNGKILIRRDVVFDESASWDWKNNEEYVSLVDGELTNDGEQTVVESSMETVTSTPPSS 255

Query: 121 APSTSQSYHCLSSNDETSDELPSQRQRRMTAIEKNETWKMV 162
            PST QSYH  SSNDETSDELPSQR R M  I  +  + ++
Sbjct: 256 TPSTPQSYHSSSSNDETSDELPSQRFRSMEDIYNSSQFALM 296

[Close]

BLAST of Cmc06g0172491 vs. NCBI nr
Match: RVW67792.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 184.5 bits (467), Expect = 8.9e-43
Identity = 101/237 (42.62%), Postives = 147/237 (62.03%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           +N+ P+EAWY +KP VSHL+VFC ++Y L+ S    KLD+KS KCIF+GYC+Q K Y+L+
Sbjct: 601 LNRIPYEAWYGRKPWVSHLKVFCSVAYTLIDSHNCSKLDEKSAKCIFIGYCSQSKGYKLY 660

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPT-STPSS 120
           NP + KI+  R+VVFDE ASW W+ +E+   +   E++++ E  V +S  + P+   P+S
Sbjct: 661 NPVSGKIIVSRNVVFDEKASWTWRVSEDGALV---EISSESE--VAQSEDQQPSVQIPAS 720

Query: 121 GAPSTSQSYHCL--SSNDETSDELPSQRQR------------------------------ 180
             PS S S   L  SS+ ++S+E P ++ R                              
Sbjct: 721 PTPSHSPSSPNLSSSSSSQSSEEAPPRKFRSLRDIYETTQVLFVADPTTFEEAVEKEEWC 780

Query: 181 -----RMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA 200
                 + AIEKNETW++V+L E K+ IG+KWV++TK++ADGS++KHKARLVA GYA
Sbjct: 781 SAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYA 832

[Close]

BLAST of Cmc06g0172491 vs. NCBI nr
Match: CAN71759.1 (hypothetical protein VITISV_020777 [Vitis vinifera])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-42
Identity = 92/199 (46.23%), Postives = 136/199 (68.34%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           +N+TP+EAWY +KP VSHL+VF  ++Y L+ S    KLD+KS KCIF+GYC+Q K Y+L+
Sbjct: 632 LNRTPYEAWYGRKPWVSHLKVFGSVAYTLIDSHNRSKLDEKSVKCIFIGYCSQSKGYKLY 691

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSG 120
           NP + KI+  R+VVFDE ASW W+ +E+   +   E++++ E  V +S  + P+    + 
Sbjct: 692 NPVSGKIIVSRNVVFDEKASWTWRVSEDGALV---EISSESE--VAQSEDQQPSXQIPAT 751

Query: 121 APSTSQSYHCLSSNDETSDELPSQRQRRMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKF 180
            P+T +            +E  S  +  + AIEKNETW++V+L E K+ IG+KWV++TK+
Sbjct: 752 DPTTFE-------EAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKY 811

Query: 181 VADGSLEKHKARLVANGYA 200
           +ADGS++KHKARLVA GYA
Sbjct: 812 LADGSIQKHKARLVAKGYA 818

[Close]

BLAST of Cmc06g0172491 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16
Identity = 72/250 (28.80%), Postives = 105/250 (42.00%), Query Frame = 0


Query: 5   PFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLHNPFN 64
           P   W +K+ + SHL+VF C ++A +  +   KLD KS  CIF+GY  +   YRL +P  
Sbjct: 634 PERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVK 693

Query: 65  DKILTKRDVVFDES---------------------ASWDWQNNEEYVSLVHGELTNDGEQ 124
            K++  RDVVF ES                           NN         E++  GEQ
Sbjct: 694 KKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQ 753

Query: 125 --TVVE---------SSMETPTSTPSSGAP-------------STSQSYHCLSSNDE--- 184
              V+E           +E PT       P               S  Y  +S + E   
Sbjct: 754 PGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPES 813

Query: 185 --------TSDELPSQRQRRMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEK 199
                     ++L    Q  M +++KN T+K+V+L +GK  +  KWV+K K   D  L +
Sbjct: 814 LKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVR 873

[Close]

BLAST of Cmc06g0172491 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 2   NKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLHN 61
           +KTP+E W++KKP + HLRVF    Y  + ++   K D KS K IFVGY  +   ++L +
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKNK-QGKFDDKSFKSIFVGY--EPNGFKLWD 692

Query: 62  PFNDKILTKRDVVFDES 79
             N+K +  RDVV DE+
Sbjct: 693 AVNEKFIVARDVVVDET 706

[Close]

BLAST of Cmc06g0172491 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 42/128 (32.81%), Postives = 61/128 (47.66%), Query Frame = 0


Query: 3   KTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLHNP 62
           ++PF+  +   PN   LRVF C  Y  L      KLD KS++C+F+GY     AY   + 
Sbjct: 672 ESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHL 731

Query: 63  FNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMET-PTSTPSSGA 122
              ++   R V FDE+  + + N   Y++ +        E + V S   T PT TP   A
Sbjct: 732 QTSRLYISRHVRFDENC-FPFSN---YLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPA 791

Query: 123 PSTSQSYH 130
           PS S  +H
Sbjct: 792 PSCSDPHH 795

[Close]

BLAST of Cmc06g0172491 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 146 QRRMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGY 199
           Q  + A+ +N+TW +V     ++ +G KWV+KTK  +DG+L++ KARLVA G+
Sbjct: 45  QEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

[Close]

BLAST of Cmc06g0172491 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 0


Query: 3   KTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYR-LHN 62
           ++PF+  + + PN   L+VF C  Y  L      KL+ KSK+C F+GY     AY  LH 
Sbjct: 651 QSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHI 710

Query: 63  PFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSGA 122
           P   ++ T R V FDE           + +   G  T+  +++  +S+   P+ T     
Sbjct: 711 P-TGRLYTSRHVQFDERCF-------PFSTTNFGVSTSQEQRS--DSAPNWPSHTTLPTT 770

Query: 123 PSTSQSYHCLSSNDETSDELPS 144
           P    +  CL  + +TS   PS
Sbjct: 771 PLVLPAPPCLGPHLDTSPRPPS 782

HSP 2 Score: 44.3 bits (103), Expect = 1.9e-03
Identity = 20/45 (44.44%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 155  NETWKMV-DLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGY 199
            N TW +V         +G +W++  KF +DGSL ++KARLVA GY
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY 1009

[Close]

BLAST of Cmc06g0172491 vs. ExPASy TrEMBL
Match: A0A5D3BRM6 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00690 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.1e-78
Identity = 159/228 (69.74%), Postives = 171/228 (75.00%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           MNKTPFE WY KKPNV+HLRVF CISYAL+ SQV QKLDKKS+KCIFVGYCTQ KAYRL+
Sbjct: 322 MNKTPFEVWYGKKPNVNHLRVFGCISYALVPSQVRQKLDKKSEKCIFVGYCTQSKAYRLY 381

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSG 120
           NP N KILT+RDVVFDESASWDW+N+EEYVSLV GELTNDGEQTVVESSMETPTSTP S 
Sbjct: 382 NPLNGKILTRRDVVFDESASWDWKNSEEYVSLVDGELTNDGEQTVVESSMETPTSTPPSS 441

Query: 121 APSTSQSYHCLSSNDE---------------------------TSDELPSQR--QRRMTA 180
            PST QSYH  SSNDE                           T   +  Q+  +  M A
Sbjct: 442 TPSTPQSYHSSSSNDEHQMNYHLRGFGPWKISIILLNLLLWFLTQCLMMRQQAMKEEMAA 501

Query: 181 IEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA 200
           IEKN TWKMVDL EGK+AIGLKWVYK+KF ADGSLEKHKA LVA GYA
Sbjct: 502 IEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSLEKHKAHLVAKGYA 549

[Close]

BLAST of Cmc06g0172491 vs. ExPASy TrEMBL
Match: A0A5A7SV62 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001630 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 5.1e-68
Identity = 148/235 (62.98%), Postives = 157/235 (66.81%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           MNKTPFEAWY KKPN                    + L KKS+KCIFV YCTQ KAYRL+
Sbjct: 261 MNKTPFEAWYGKKPNFV------------------KNLIKKSEKCIFVDYCTQSKAYRLY 320

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSG 120
           NP N KILT+RDVVFDESASWDW+++EEYVSLV GELTNDGEQTVVESSMET TSTP S 
Sbjct: 321 NPLNGKILTRRDVVFDESASWDWKSSEEYVSLVDGELTNDGEQTVVESSMETSTSTPPSS 380

Query: 121 APSTSQSYHCLSSNDETSDELPSQRQR--------------------------------- 180
            PST QSYH  SSNDETSDELPSQR R                                 
Sbjct: 381 TPSTPQSYHSSSSNDETSDELPSQRFRSMEDIYNSSLFALMVSDPVCYDEAANKEEWQQV 440

Query: 181 ---RMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA 200
               M AIEKN TWK+VDL EGK+AIGLKWVYKTKF ADGSLEKHKARLVA GYA
Sbjct: 441 MKEEMKAIEKNGTWKIVDLLEGKNAIGLKWVYKTKFAADGSLEKHKARLVAKGYA 477

[Close]

BLAST of Cmc06g0172491 vs. ExPASy TrEMBL
Match: A0A5D3BFW8 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00210 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.2e-63
Identity = 127/161 (78.88%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           MNKTPFEAWY KKP VSHLRVF CISYAL+ SQV QKLDKKS+KCIFVGYCTQ KAYRLH
Sbjct: 136 MNKTPFEAWYGKKPKVSHLRVFGCISYALVPSQVRQKLDKKSEKCIFVGYCTQSKAYRLH 195

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPTSTPSSG 120
           NP N KIL +RDVVFDESASWDW+NNEEYVSLV GELTNDGEQTVVESSMET TSTP S 
Sbjct: 196 NPLNGKILIRRDVVFDESASWDWKNNEEYVSLVDGELTNDGEQTVVESSMETVTSTPPSS 255

Query: 121 APSTSQSYHCLSSNDETSDELPSQRQRRMTAIEKNETWKMV 162
            PST QSYH  SSNDETSDELPSQR R M  I  +  + ++
Sbjct: 256 TPSTPQSYHSSSSNDETSDELPSQRFRSMEDIYNSSQFALM 296

[Close]

BLAST of Cmc06g0172491 vs. ExPASy TrEMBL
Match: A0A0V0IV83 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.0e-47
Identity = 114/238 (47.90%), Postives = 144/238 (60.50%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           MNKTP+EAW+ +KPNVSHLRVF C++YAL+SSQ  QKLD+KS+KCIF+GYCT  KAYRL+
Sbjct: 656 MNKTPYEAWHCRKPNVSHLRVFGCVAYALVSSQARQKLDEKSEKCIFIGYCTHSKAYRLY 715

Query: 61  NPFNDKILTKRDVVFDESASWDWQ----NNEEYVSLVHGELTNDGE---QTVVESSMETP 120
           NPFN KI  +RDV+FDE+ASWDW       E  + L   E    G     +   SSME P
Sbjct: 716 NPFNGKISVRRDVIFDENASWDWSEKLVRQETPMPLGITEEEEKGSTPASSFSGSSMELP 775

Query: 121 TSTPSSGAPSTSQS-------------------------YHCLSSNDETSDELPSQRQ-- 180
           TS  S     +S                               S +D  + E  ++++  
Sbjct: 776 TSPISETHEESSDGIVPLRRSTRLRTPNPKYANNLYATCQFAFSVSDPLNYEEAAEKEEW 835

Query: 181 -----RRMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA 200
                  M + EKN TW+M++L +GK+AIGLKWV+KTKF ADGSL+KHKARLVA GYA
Sbjct: 836 RKEIVEEMKSNEKNGTWEMMELPKGKNAIGLKWVFKTKFAADGSLQKHKARLVAKGYA 893

[Close]

BLAST of Cmc06g0172491 vs. ExPASy TrEMBL
Match: A0A438G6H0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2082 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.3e-43
Identity = 101/237 (42.62%), Postives = 147/237 (62.03%), Query Frame = 0


Query: 1   MNKTPFEAWYDKKPNVSHLRVFCCISYALLSSQVHQKLDKKSKKCIFVGYCTQFKAYRLH 60
           +N+ P+EAWY +KP VSHL+VFC ++Y L+ S    KLD+KS KCIF+GYC+Q K Y+L+
Sbjct: 601 LNRIPYEAWYGRKPWVSHLKVFCSVAYTLIDSHNCSKLDEKSAKCIFIGYCSQSKGYKLY 660

Query: 61  NPFNDKILTKRDVVFDESASWDWQNNEEYVSLVHGELTNDGEQTVVESSMETPT-STPSS 120
           NP + KI+  R+VVFDE ASW W+ +E+   +   E++++ E  V +S  + P+   P+S
Sbjct: 661 NPVSGKIIVSRNVVFDEKASWTWRVSEDGALV---EISSESE--VAQSEDQQPSVQIPAS 720

Query: 121 GAPSTSQSYHCL--SSNDETSDELPSQRQR------------------------------ 180
             PS S S   L  SS+ ++S+E P ++ R                              
Sbjct: 721 PTPSHSPSSPNLSSSSSSQSSEEAPPRKFRSLRDIYETTQVLFVADPTTFEEAVEKEEWC 780

Query: 181 -----RMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGYA 200
                 + AIEKNETW++V+L E K+ IG+KWV++TK++ADGS++KHKARLVA GYA
Sbjct: 781 SAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYA 832

[Close]

BLAST of Cmc06g0172491 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-09
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 151 AIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGY 199
           A+E   TW++  L   K  IG KWVYK K+ +DG++E++KARLVA GY
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155

[Close]

BLAST of Cmc06g0172491 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-07
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 146 QRRMTAIEKNETWKMVDLSEGKDAIGLKWVYKTKFVADGSLEKHKARLVANGY 199
           Q  + A+ +N+TW +V     ++ +G KWV+KTK  +DG+L++ KARLVA G+
Sbjct: 45  QEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

The following BLAST results are available for this feature:

BLAST of Cmc06g0172491 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00906.1	2.3e-78	69.74	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0033341.1	1.0e-67	62.98	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0050265.1	4.6e-63	78.88	integrase [Cucumis melo var. makuwa] >TYJ98143.1 integrase [Cucumis melo var. ma...	[more]
RVW67792.1	8.9e-43	42.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN71759.1	1.2e-42	46.23	hypothetical protein VITISV_020777 [Vitis vinifera]	[more]

BLAST of Cmc06g0172491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-16	28.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.7e-10	42.86	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	5.7e-08	32.81	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	1.4e-06	43.40	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	1.2e-05	29.58	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc06g0172491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRM6	1.1e-78	69.74	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SV62	5.1e-68	62.98	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BFW8	2.2e-63	78.88	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00210 PE=4...	[more]
A0A0V0IV83	1.0e-47	47.90	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A0A438G6H0	4.3e-43	42.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc06g0172491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.9e-09	52.08	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.0e-07	43.40	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 155..198 e-value: 3.3E-8 score: 33.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..145
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0172491.1	Cmc06g0172491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding