Cmc06g0171841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0171841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 27621436 .. 27622044 (-)
RNA-Seq Expression	Cmc06g0171841
Synteny	Cmc06g0171841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTTGTTACCTCAGAGGTACGCTTGACTATGGGTTGTTTTATTATTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTATCATGCAGTTTGGTTAAGAAATTTCTTAAAGACAGTTGGAATTTTGCAAGAAGATCCAACTGTGATTCATGTAGACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAAGTTCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGCCACTCAAAGTTAATGTGTTTAACAACTTAAGAACATTGCTTGGAGTTTTTCAAAACAAAAAAACATGTTTAAGGGAGGATGTTGAAAATTAA

mRNA sequence

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTTGTTACCTCAGAGGTACGCTTGACTATGGGTTGTTTTATTATTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTATCATGCAGTTTGGTTAAGAAATTTCTTAAAGACAGTTGGAATTTTGCAAGAAGATCCAACTGTGATTCATGTAGACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAAGTTCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGCCACTCAAAGTTAATGTGTTTAACAACTTAAGAACATTGCTTGGAGTTTTTCAAAACAAAAAAACATGTTTAAGGGAGGATGTTGAAAATTAA

Coding sequence (CDS)

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTTGTTACCTCAGAGGTACGCTTGACTATGGGTTGTTTTATTATTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTATCATGCAGTTTGGTTAAGAAATTTCTTAAAGACAGTTGGAATTTTGCAAGAAGATCCAACTGTGATTCATGTAGACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAAGTTCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGCCACTCAAAGTTAATGTGTTTAACAACTTAAGAACATTGCTTGGAGTTTTTCAAAACAAAAAAACATGTTTAAGGGAGGATGTTGAAAATTAA

Protein sequence

MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFNNLRTLLGVFQNKKTCLREDVEN

Homology

[Close]

BLAST of Cmc06g0171841 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 399.1 bits (1024), Expect = 2.3e-107
Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
            MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTNDRKSTSGYVF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
            FIGNTAFTWSSKKQPIVTLSTCEAEYVA ASCV HAVWLRN LKTV ILQEDPTVIH+DN
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVATASCVCHAVWLRNLLKTVEILQEDPTVIHIDN 1262

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN
Sbjct: 1263 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1322

Query: 181  NLRTLLGVFQNKKTCLREDVEN 203
            NLRTLLGVFQNKKTCLREDVEN
Sbjct: 1323 NLRTLLGVFQNKKTCLREDVEN 1344

[Close]

BLAST of Cmc06g0171841 vs. NCBI nr
Match: TYK21979.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 398.3 bits (1022), Expect = 4.0e-107
Identity = 196/202 (97.03%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
           MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTN RKSTSGYVF
Sbjct: 302 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYVF 361

Query: 61  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
           FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LKTVGILQEDPTVIHVDN
Sbjct: 362 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDN 421

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
           KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVFN
Sbjct: 422 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVFN 481

Query: 181 NLRTLLGVFQNKKTCLREDVEN 203
           NLRTLLGVFQNKKTCLREDVEN
Sbjct: 482 NLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc06g0171841 vs. NCBI nr
Match: KAA0032986.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 398.3 bits (1022), Expect = 4.0e-107
Identity = 196/202 (97.03%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
           MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTN RKSTSGYVF
Sbjct: 302 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYVF 361

Query: 61  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
           FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LKTVGILQEDPTVIHVDN
Sbjct: 362 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDN 421

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
           KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVFN
Sbjct: 422 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVFN 481

Query: 181 NLRTLLGVFQNKKTCLREDVEN 203
           NLRTLLGVFQNKKTCLREDVEN
Sbjct: 482 NLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc06g0171841 vs. NCBI nr
Match: TYK12247.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 7.5e-106
Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
            MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTNDRKSTSGYVF
Sbjct: 821  MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 880

Query: 61   FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
            FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LKTVGILQEDPTVIH+DN
Sbjct: 881  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 940

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN
Sbjct: 941  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1000

Query: 181  NLRTLLGVFQNKKTCLREDVEN 203
            NLRTLLGVF  KKTCLREDVEN
Sbjct: 1001 NLRTLLGVFL-KKTCLREDVEN 1021

[Close]

BLAST of Cmc06g0171841 vs. NCBI nr
Match: KAA0056496.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 7.1e-104
Identity = 192/203 (94.58%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
           MESPTTTHLKVAKRIL YLRGTLDYGL Y SSKEFKLEGYCDSDWAGDTNDRKSTSGYVF
Sbjct: 129 MESPTTTHLKVAKRILRYLRGTLDYGLLYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 188

Query: 61  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
           FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LK VGILQ++PTVIHVDN
Sbjct: 189 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKKVGILQDNPTVIHVDN 248

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
           KSTIALAKNPVFHDRSK IDTRFHFIRDCISRKEVQVEYVKT+DQIADIFTKPLKVNVFN
Sbjct: 249 KSTIALAKNPVFHDRSKQIDTRFHFIRDCISRKEVQVEYVKTQDQIADIFTKPLKVNVFN 308

Query: 181 NLRTLLGVFQN-KKTCLREDVEN 203
           NLRTLLGVFQN KKTCLREDVEN
Sbjct: 309 NLRTLLGVFQNKKKTCLREDVEN 331

[Close]

BLAST of Cmc06g0171841 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-38
Identity = 81/195 (41.54%), Postives = 109/195 (55.90%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
            M  PT  H    KR+L YL GT D+G+F        L  Y D+DWAGDT+D  ST+GY+ 
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
            ++G+   +WSSKKQ  V  S+ EAEY + A+      W+ + L  +GI    P VI+ DN
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDN 1375

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
                 L  NPVFH R KHI   +HFIR+ +    ++V +V T DQ+AD  TKPL    F 
Sbjct: 1376 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQ 1435

Query: 181  NLRTLLGVFQNKKTC 196
            N    +GV +   +C
Sbjct: 1436 NFSRKIGVIKVPPSC 1450

[Close]

BLAST of Cmc06g0171841 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.1e-38
Identity = 80/188 (42.55%), Postives = 108/188 (57.45%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
            M  PT  HL+  KRIL YL GT ++G+F        L  Y D+DWAGD +D  ST+GY+ 
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
            ++G+   +WSSKKQ  V  S+ EAEY + A+      W+ + L  +GI    P VI+ DN
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
                 L  NPVFH R KHI   +HFIR+ +    ++V +V T DQ+AD  TKPL    F 
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452

Query: 181  NLRTLLGV 189
            N  + +GV
Sbjct: 1453 NFASKIGV 1460

[Close]

BLAST of Cmc06g0171841 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 7.7e-37
Identity = 80/185 (43.24%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 13   KRILCYLRGTLDYGLFYYSSKEF--KLEGYCDSDWAGDTNDRKSTSGYVF-FIGNTAFTW 72
            KR+L YL+GT+D  L +  +  F  K+ GY DSDWAG   DRKST+GY+F         W
Sbjct: 1222 KRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1281

Query: 73   SSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDNKSTIALAKN 132
            ++K+Q  V  S+ EAEY+A    V  A+WL+  L ++ I  E+P  I+ DN+  I++A N
Sbjct: 1282 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANN 1341

Query: 133  PVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFNNLRTLLGVF 192
            P  H R+KHID ++HF R+ +    + +EY+ TE+Q+ADIFTKPL    F  LR  LG+ 
Sbjct: 1342 PSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401

Query: 193  QNKKT 195
            Q+ ++
Sbjct: 1402 QDDQS 1406

[Close]

BLAST of Cmc06g0171841 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 76/191 (39.79%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
            +E+P   H +  K IL YLRGT    L +  S    L+GY D+D AGD ++RKS++GY+F
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLF 1199

Query: 61   FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
                 A +W SK Q  V LST EAEY+AA       +WL+ FL+ +G+ Q++  V++ D+
Sbjct: 1200 TFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKE-YVVYCDS 1259

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
            +S I L+KN ++H R+KHID R+H+IR+ +  + ++V  + T +  AD+ TK +  N F 
Sbjct: 1260 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1319

Query: 181  NLRTLLGVFQN 192
              + L+G+  N
Sbjct: 1320 LCKELVGMHSN 1328

[Close]

BLAST of Cmc06g0171841 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.0e-18
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 4   PTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIG 63
           P  TH +  KR+L YL+ T  YGL +  +   KL GY D+DWAGD   R+STSGY+F + 
Sbjct: 38  PCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLN 97

Query: 64  NTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWL 100
               +W SKKQ  V LS+ E EY+A +     AVWL
Sbjct: 98  GGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc06g0171841 vs. ExPASy TrEMBL
Match: A0A5A7U3F3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00420 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.1e-107
Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
            MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTNDRKSTSGYVF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
            FIGNTAFTWSSKKQPIVTLSTCEAEYVA ASCV HAVWLRN LKTV ILQEDPTVIH+DN
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVATASCVCHAVWLRNLLKTVEILQEDPTVIHIDN 1262

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN
Sbjct: 1263 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1322

Query: 181  NLRTLLGVFQNKKTCLREDVEN 203
            NLRTLLGVFQNKKTCLREDVEN
Sbjct: 1323 NLRTLLGVFQNKKTCLREDVEN 1344

[Close]

BLAST of Cmc06g0171841 vs. ExPASy TrEMBL
Match: A0A5D3DF53 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00090 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 196/202 (97.03%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
           MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTN RKSTSGYVF
Sbjct: 302 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYVF 361

Query: 61  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
           FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LKTVGILQEDPTVIHVDN
Sbjct: 362 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDN 421

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
           KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVFN
Sbjct: 422 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVFN 481

Query: 181 NLRTLLGVFQNKKTCLREDVEN 203
           NLRTLLGVFQNKKTCLREDVEN
Sbjct: 482 NLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc06g0171841 vs. ExPASy TrEMBL
Match: A0A5A7SSL5 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00730 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 196/202 (97.03%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
           MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTN RKSTSGYVF
Sbjct: 302 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYVF 361

Query: 61  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
           FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LKTVGILQEDPTVIHVDN
Sbjct: 362 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDN 421

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
           KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVFN
Sbjct: 422 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVFN 481

Query: 181 NLRTLLGVFQNKKTCLREDVEN 203
           NLRTLLGVFQNKKTCLREDVEN
Sbjct: 482 NLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc06g0171841 vs. ExPASy TrEMBL
Match: A0A5D3CJX7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00560 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.7e-106
Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
            MESPTTTHLKVAKRIL YLRGTLDYGLFY SSKEFKLEGYCDSDWAGDTNDRKSTSGYVF
Sbjct: 821  MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 880

Query: 61   FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
            FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LKTVGILQEDPTVIH+DN
Sbjct: 881  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 940

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN
Sbjct: 941  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1000

Query: 181  NLRTLLGVFQNKKTCLREDVEN 203
            NLRTLLGVF  KKTCLREDVEN
Sbjct: 1001 NLRTLLGVFL-KKTCLREDVEN 1021

[Close]

BLAST of Cmc06g0171841 vs. ExPASy TrEMBL
Match: A0A5A7UQB9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G002780 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.4e-104
Identity = 192/203 (94.58%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
           MESPTTTHLKVAKRIL YLRGTLDYGL Y SSKEFKLEGYCDSDWAGDTNDRKSTSGYVF
Sbjct: 129 MESPTTTHLKVAKRILRYLRGTLDYGLLYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 188

Query: 61  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDN 120
           FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCV HAVWLRN LK VGILQ++PTVIHVDN
Sbjct: 189 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKKVGILQDNPTVIHVDN 248

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 180
           KSTIALAKNPVFHDRSK IDTRFHFIRDCISRKEVQVEYVKT+DQIADIFTKPLKVNVFN
Sbjct: 249 KSTIALAKNPVFHDRSKQIDTRFHFIRDCISRKEVQVEYVKTQDQIADIFTKPLKVNVFN 308

Query: 181 NLRTLLGVFQN-KKTCLREDVEN 203
           NLRTLLGVFQN KKTCLREDVEN
Sbjct: 309 NLRTLLGVFQNKKKTCLREDVEN 331

[Close]

BLAST of Cmc06g0171841 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-27
Identity = 54/147 (36.73%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 2   ESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFF 61
           E+P   H +   +IL Y++GT+  GLFY S  E +L+ + D+ +    + R+ST+GY  F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 62  IGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVWLRNFLKTVGILQEDPTVIHVDNK 121
           +G +  +W SKKQ +V+ S+ EAEY A +      +WL  F + + +    PT++  DN 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 122 STIALAKNPVFHDRSKHIDTRFHFIRD 149
           + I +A N VFH+R+KHI++  H +R+
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc06g0171841 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-18
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 60
           M  PT     + KR+L Y++GT+ +GL+ + + +  ++ +CDSDWAG T+ R+ST+G+  
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVYHAVW 99
           F+G    +WS+K+QP V+ S+ E EY A A       W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc06g0171841 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.1 bits (113), Expect = 9.5e-06
Identity = 18/53 (33.96%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 6  TTHLKVAKRILCYLRGTLDYGLFYYSSKEFKLEGYCDSDWAGDTNDRKSTSGY 59
          T  ++   ++L Y++GT+  GLFY ++ + +L+ + DSDWA   + R+S +G+
Sbjct: 26 TAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc06g0171841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047979.1	2.3e-107	96.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21979.1	4.0e-107	97.03	putative copia-type polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032986.1	4.0e-107	97.03	putative copia-type polyprotein [Cucumis melo var. makuwa]	[more]
TYK12247.1	7.5e-106	96.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0056496.1	7.1e-104	94.58	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0171841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	2.4e-38	41.54	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	9.1e-38	42.55	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	7.7e-37	43.24	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.4e-33	39.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	8.0e-18	46.88	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc06g0171841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3F3	1.1e-107	96.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DF53	1.9e-107	97.03	Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SSL5	1.9e-107	97.03	Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CJX7	3.7e-106	96.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UQB9	3.4e-104	94.58	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Cmc06g0171841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.4e-27	36.73	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.8e-18	38.78	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	9.5e-06	33.96	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 51..190
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 51..190
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 38..174 e-value: 7.41158E-87 score: 250.463

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0171841.1	Cmc06g0171841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding