Cmc06g0171441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0171441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr06: 27255099 .. 27256607 (-)
RNA-Seq Expression	Cmc06g0171441
Synteny	Cmc06g0171441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATATTTATAATTCTTCTCAATTCTCTCTTATGGTTTTTGACCCAGTGTCTTATGATGAGGCAACAAGCAAAGAAAAATGGCAGCAAGCAATGAAGGAAGAAATGACAGCTATTGAGAAAAATGGAACATGGAAAATGGTAGACTTACCAGAAGGAAAAAATGCAAATGGCTTGAAGTGGGTGTATAAGACGAAATTTGCTGCAGATGGGAGTTTAGAGAAGCAAAAAGCTCGTCTTGTGGCAATAGGATATGCACATCAACATGATATTGATTTCGAGGAAACTTTCTCTCCTGCAGCTTGTTTCGAAACAGTGAGGATTGTTCTAGCATTGACAGCACAACAACAATGACCAGTCTATCAATTTGATGTCAAGTCAGTCTTTCTTAATGGAGAACTACAAGAAGAAGTCTATGTTAAAAAACCGGAAGGTTTTGTTAAAAAGGACAGCGAAGAAAAGGTGTATAAGTTAACAAAGGCGTTGTATGGGTTGAAACAAGCTCCTCGGGCGAGGTATAGCAAAATCGACGGATATTTTCAACAAAATGGATTCAAAAGGAGTGCAAATGAGCCTACCTTGTATGAGAAAAAGGGAGGTAAAAATGATTTCATCATTGTTTGTCTTTATGTTGATGATATCATTTATACTAGTTCATCTAATTCTCTGGTTGCTGAGTTCAAATCACATATGAAGAATAAATTTGAGATGACAGATTTAGGTTTGCTGCATTTCTTTCTTGGTTTAGAAGTTTGTCAAACTGATGGTGGGATATTTATCTCACAAAAGAAGTATGCCAAGGATCTTCTCAAAAAATTTGGTATGATCAATTGTAAGCCAGCAACTACACCAATGAATGTGAATAAGAAGCTGCAACAAAATGATGGTGTAGAGATGACTGATGCACAGCGGTTTAGAAGCCTTGTTGGAGGCTTGATTTATCTAACTCATACCCGTCCCGATATTTCGTATTCTATTGGTGTGATTTCAAGGTTTATGCAATGTCCTTCAAGGGATCATTTCGGAGCAGCAAAGCGAGTTATGCAATACATTGCTGGAACTATAGAATATGGTATTTGGTACTCTAAAGTTTCTGATTTCAAATTATGCGGGTTCACAGACAATGATTAGGCTAGCTCCTTGGATGATAGGCGAAGTGTTTCAGCGAATGTTTTCACTTTAGCGTCAGGAGTTATTACTTGGAGCTCGAAGAAACAAGCAATTGTTGCTTTATCATCTTCAGAAGCAGAATATGCTGCAGCAACTTCAGCAGCATGTCAGGCAATTTGGTTGCGAAGAATGCTAACAGAACTCCAACATGAGCAAGAGGGAGCAACTGTAATATTCCGCGACAATAAAGCAACGATCTCAATGACGAAAAATCCGACATTTCATAGCCGAACAAAGCACATTGATATTTTCTTTCATTTTATTTGTGATTTGGTTGCAAAGGAAGAAGTTTCTCTGTCATATTGCAGCACACATGAGCGTGGGCTGATATTCTGA

mRNA sequence

ATGGAAGATATTTATAATTCTTCTCAATTCTCTCTTATGGTTTTTGACCCAGTGTCTTATGATGAGGCAACAAGCAAAGAAAAATGGCAGCAAGCAATGAAGGAAGAAATGACAGCTATTGAGAAAAATGGAACATGGAAAATGGTAGACTTACCAGAAGGAAAAAATGCAAATGGCTTGAAGTGGGTGTATAAGACGAAATTTGCTGCAGATGGGAGTTTAGAGAAGCAAAAAGCTCGTCTTGTGGCAATAGGATATGCACATCAACATGATATTGATTTCGAGGAAACTTTCTCTCCTGCAGCTTGTTTCGAAACATCAGTCTTTCTTAATGGAGAACTACAAGAAGAAGTCTATGTTAAAAAACCGGAAGGTTTTGTTAAAAAGGACAGCGAAGAAAAGGTGTATAAGTTAACAAAGGCGTTGTATGGGTTGAAACAAGCTCCTCGGGCGAGGTATAGCAAAATCGACGGATATTTTCAACAAAATGGATTCAAAAGGAGTGCAAATGAGCCTACCTTGTATGAGAAAAAGGGAGGTAAAAATGATTTCATCATTGTTTGTCTTTATGTTGATGATATCATTTATACTAGTTCATCTAATTCTCTGGTTGCTGAGTTCAAATCACATATGAAGAATAAATTTGAGATGACAGATTTAGGTTTGCTGCATTTCTTTCTTGGTTTAGAAGTTTGTCAAACTGATGGTGGGATATTTATCTCACAAAAGAAGTATGCCAAGGATCTTCTCAAAAAATTTGGTATGATCAATTGTAAGCCAGCAACTACACCAATGAATGTGAATAAGAAGCTGCAACAAAATGATGGTGTAGAGATGACTGATGCACAGCGGTTTAGAAGCCTTGTTGGAGGCTTGATTTATCTAACTCATACCCGTCCCGATATTTCGTATTCTATTGGTGTGATTTCAAGGTTTATGCAATGTCCTTCAAGGGATCATTTCGGAGCAGCAAAGCGAGTTATGCAATACATTGCTGGAACTATAGAATATGGTATTTGGTACTCTAAAGCTAGCTCCTTGGATGATAGGCGAAGTGTTTCAGCGAATGTTTTCACTTTAGCGTCAGGAGTTATTACTTGGAGCTCGAAGAAACAAGCAATTGTTGCTTTATCATCTTCAGAAGCAGAATATGCTGCAGCAACTTCAGCAGCATGTCAGGCAATTTGGTTGCGAAGAATGCTAACAGAACTCCAACATGAGCAAGAGGGAGCAACTGTAATATTCCGCGACAATAAAGCAACGATCTCAATGACGAAAAATCCGACATTTCATAGCCGAACAAAGCACATTGATATTTTCTTTCATTTTATTTGTGATTTGGTTGCAAAGGAAGAAGTTTCTCTGTCATATTGCAGCACACATGAGCGTGGGCTGATATTCTGA

Coding sequence (CDS)

ATGGAAGATATTTATAATTCTTCTCAATTCTCTCTTATGGTTTTTGACCCAGTGTCTTATGATGAGGCAACAAGCAAAGAAAAATGGCAGCAAGCAATGAAGGAAGAAATGACAGCTATTGAGAAAAATGGAACATGGAAAATGGTAGACTTACCAGAAGGAAAAAATGCAAATGGCTTGAAGTGGGTGTATAAGACGAAATTTGCTGCAGATGGGAGTTTAGAGAAGCAAAAAGCTCGTCTTGTGGCAATAGGATATGCACATCAACATGATATTGATTTCGAGGAAACTTTCTCTCCTGCAGCTTGTTTCGAAACATCAGTCTTTCTTAATGGAGAACTACAAGAAGAAGTCTATGTTAAAAAACCGGAAGGTTTTGTTAAAAAGGACAGCGAAGAAAAGGTGTATAAGTTAACAAAGGCGTTGTATGGGTTGAAACAAGCTCCTCGGGCGAGGTATAGCAAAATCGACGGATATTTTCAACAAAATGGATTCAAAAGGAGTGCAAATGAGCCTACCTTGTATGAGAAAAAGGGAGGTAAAAATGATTTCATCATTGTTTGTCTTTATGTTGATGATATCATTTATACTAGTTCATCTAATTCTCTGGTTGCTGAGTTCAAATCACATATGAAGAATAAATTTGAGATGACAGATTTAGGTTTGCTGCATTTCTTTCTTGGTTTAGAAGTTTGTCAAACTGATGGTGGGATATTTATCTCACAAAAGAAGTATGCCAAGGATCTTCTCAAAAAATTTGGTATGATCAATTGTAAGCCAGCAACTACACCAATGAATGTGAATAAGAAGCTGCAACAAAATGATGGTGTAGAGATGACTGATGCACAGCGGTTTAGAAGCCTTGTTGGAGGCTTGATTTATCTAACTCATACCCGTCCCGATATTTCGTATTCTATTGGTGTGATTTCAAGGTTTATGCAATGTCCTTCAAGGGATCATTTCGGAGCAGCAAAGCGAGTTATGCAATACATTGCTGGAACTATAGAATATGGTATTTGGTACTCTAAAGCTAGCTCCTTGGATGATAGGCGAAGTGTTTCAGCGAATGTTTTCACTTTAGCGTCAGGAGTTATTACTTGGAGCTCGAAGAAACAAGCAATTGTTGCTTTATCATCTTCAGAAGCAGAATATGCTGCAGCAACTTCAGCAGCATGTCAGGCAATTTGGTTGCGAAGAATGCTAACAGAACTCCAACATGAGCAAGAGGGAGCAACTGTAATATTCCGCGACAATAAAGCAACGATCTCAATGACGAAAAATCCGACATTTCATAGCCGAACAAAGCACATTGATATTTTCTTTCATTTTATTTGTGATTTGGTTGCAAAGGAAGAAGTTTCTCTGTCATATTGCAGCACACATGAGCGTGGGCTGATATTCTGA

Protein sequence

MEDIYNSSQFSLMVFDPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMNVNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSKASSLDDRRSVSANVFTLASGVITWSSKKQAIVALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHIDIFFHFICDLVAKEEVSLSYCSTHERGLIF

Homology

[Close]

BLAST of Cmc06g0171441 vs. NCBI nr
Match: KAA0046865.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 862.4 bits (2227), Expect = 1.7e-246
Identity = 433/450 (96.22%), Postives = 435/450 (96.67%), Query Frame = 0


Query: 18   VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 77
            VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ
Sbjct: 658  VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 717

Query: 78   KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVKKPEGFVKKDSEEKVYK 137
            KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYV+KPEGFVKKDSEEKVYK
Sbjct: 718  KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVEKPEGFVKKDSEEKVYK 777

Query: 138  LTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 197
            LTKALYGLKQAPRA YSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT
Sbjct: 778  LTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 837

Query: 198  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 257
            SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN
Sbjct: 838  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 897

Query: 258  CKPATTPMNVNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 317
            CKPATTP NVNKKLQQNDGVEM DAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS
Sbjct: 898  CKPATTPKNVNKKLQQNDGVEMADAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 957

Query: 318  RDHFGAAKRVMQYIAGTIEYGIWYSKASSLDDRRSVSANVFTLASGVITWSSKKQAIVAL 377
            RDHFGAAK+VMQYIAGTIEYGIW          RSVS NVFTLASGVITWSSKKQAIVAL
Sbjct: 958  RDHFGAAKQVMQYIAGTIEYGIW----------RSVSVNVFTLASGVITWSSKKQAIVAL 1017

Query: 378  SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHI 437
            SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKAT SMTKNPTFHSRTKHI
Sbjct: 1018 SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATTSMTKNPTFHSRTKHI 1077

Query: 438  DIFFHFICDLVAKEEVSLSYCSTHERGLIF 468
            DIFFHFICDLVAKEEVSLSYCSTHERGLIF
Sbjct: 1078 DIFFHFICDLVAKEEVSLSYCSTHERGLIF 1097

[Close]

BLAST of Cmc06g0171441 vs. NCBI nr
Match: TYK03281.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 862.4 bits (2227), Expect = 1.7e-246
Identity = 433/450 (96.22%), Postives = 435/450 (96.67%), Query Frame = 0


Query: 18   VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 77
            VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ
Sbjct: 670  VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 729

Query: 78   KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVKKPEGFVKKDSEEKVYK 137
            KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYV+KPEGFVKKDSEEKVYK
Sbjct: 730  KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVEKPEGFVKKDSEEKVYK 789

Query: 138  LTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 197
            LTKALYGLKQAPRA YSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT
Sbjct: 790  LTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 849

Query: 198  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 257
            SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN
Sbjct: 850  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 909

Query: 258  CKPATTPMNVNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 317
            CKPATTP NVNKKLQQNDGVEM DAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS
Sbjct: 910  CKPATTPKNVNKKLQQNDGVEMADAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 969

Query: 318  RDHFGAAKRVMQYIAGTIEYGIWYSKASSLDDRRSVSANVFTLASGVITWSSKKQAIVAL 377
            RDHFGAAK+VMQYIAGTIEYGIW          RSVS NVFTLASGVITWSSKKQAIVAL
Sbjct: 970  RDHFGAAKQVMQYIAGTIEYGIW----------RSVSVNVFTLASGVITWSSKKQAIVAL 1029

Query: 378  SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHI 437
            SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKAT SMTKNPTFHSRTKHI
Sbjct: 1030 SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATTSMTKNPTFHSRTKHI 1089

Query: 438  DIFFHFICDLVAKEEVSLSYCSTHERGLIF 468
            DIFFHFICDLVAKEEVSLSYCSTHERGLIF
Sbjct: 1090 DIFFHFICDLVAKEEVSLSYCSTHERGLIF 1109

[Close]

BLAST of Cmc06g0171441 vs. NCBI nr
Match: KAA0056051.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 715.3 bits (1845), Expect = 3.4e-202
Identity = 375/451 (83.15%), Postives = 386/451 (85.59%), Query Frame = 0


Query: 48  MVDLPEGKNANGLKWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSPAACFET- 107
           MVDLPEGK A GLKWVYK+KFAADGSLEK KA LVA GYA QH IDFEETFSP A FET 
Sbjct: 1   MVDLPEGKKAIGLKWVYKSKFAADGSLEKHKACLVAKGYAQQHGIDFEETFSPLARFETM 60

Query: 108 --------------------SVFLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLK 167
                               S FLNGELQEEVYV++ EGF KKDSEEKVYKLTKALYGLK
Sbjct: 61  RIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLK 120

Query: 168 QAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAE 227
           QAPRA YSKIDGYFQQNGFKRSANEPTLY KKGGKNDFIIVCLYVDDIIYTSSS SLVAE
Sbjct: 121 QAPRAWYSKIDGYFQQNGFKRSANEPTLYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAE 180

Query: 228 FKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMN 287
           FKSHMKNKFEMTDLGLLHFFLGLEVCQT+GGIFISQKKYAKDLLKKFGMINCKPAT P+N
Sbjct: 181 FKSHMKNKFEMTDLGLLHFFLGLEVCQTEGGIFISQKKYAKDLLKKFGMINCKPATRPIN 240

Query: 288 VNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKR 347
           VN+KLQQNDG EM +AQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQ PSRDHF AAKR
Sbjct: 241 VNEKLQQNDGAEMANAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQRPSRDHFRAAKR 300

Query: 348 VMQYIAGTIEYGIWYSK--------------ASSLDDRRSVSANVFTLASGVITWSSKKQ 407
           VM+YIAGTIEYGIW SK              ASSL DRRSVSANVFTL  GVITWS KKQ
Sbjct: 301 VMRYIAGTIEYGIWCSKVSNFKLCGFTDSDWASSLGDRRSVSANVFTLGLGVITWSLKKQ 360

Query: 408 AIVALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHS 464
           A  ALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIF DNKATISMTKNPTFHS
Sbjct: 361 ATAALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFCDNKATISMTKNPTFHS 420

[Close]

BLAST of Cmc06g0171441 vs. NCBI nr
Match: TYK27736.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 604.0 bits (1556), Expect = 1.1e-168
Identity = 316/385 (82.08%), Postives = 325/385 (84.42%), Query Frame = 0


Query: 48  MVDLPEGKNANGLKWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSPAACFET- 107
           MVDLPEGKNA GLKWVYK+KFAADGSLEK KARLVA GYA QH IDFEETFSP A FET 
Sbjct: 1   MVDLPEGKNAIGLKWVYKSKFAADGSLEKHKARLVAKGYAQQHGIDFEETFSPLARFETM 60

Query: 108 --------------------SVFLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLK 167
                               S FLNGELQEEVYV++ EGF KKDSEEKVYKLTKALYGLK
Sbjct: 61  RIVLALAVQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLK 120

Query: 168 QAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAE 227
           QAPRA YSKIDGYFQQNGFKRSANEPTLY KKGGKNDFIIVCLYVDDIIYTSSS SLVAE
Sbjct: 121 QAPRAWYSKIDGYFQQNGFKRSANEPTLYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAE 180

Query: 228 FKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMN 287
           FKSHMKNKFEM DLGLLHFFLGLEVCQT+GGIFISQKKYAKDLLKKFGMINCKP T PMN
Sbjct: 181 FKSHMKNKFEMIDLGLLHFFLGLEVCQTEGGIFISQKKYAKDLLKKFGMINCKPTTRPMN 240

Query: 288 VNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKR 347
           VN+KLQQNDG EM +AQRFRSLVGGLIYLTHTRPDISYSIGVI +FMQ PSRDHFGAAKR
Sbjct: 241 VNEKLQQNDGAEMANAQRFRSLVGGLIYLTHTRPDISYSIGVIFKFMQRPSRDHFGAAKR 300

Query: 348 VMQYIAGTIEYGIWYSK--------------ASSLDDRRSVSANVFTLASGVITWSSKKQ 398
           VM+YIAGTIEYGIWYSK              ASSLDDRRSVSANVFTL  GVITWSSKKQ
Sbjct: 301 VMRYIAGTIEYGIWYSKVSDFKLCGFTDSDWASSLDDRRSVSANVFTLGLGVITWSSKKQ 360

[Close]

BLAST of Cmc06g0171441 vs. NCBI nr
Match: RVW67792.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 603.6 bits (1555), Expect = 1.4e-168
Identity = 299/498 (60.04%), Postives = 371/498 (74.50%), Query Frame = 0


Query: 1    MEDIYNSSQFSLMVFDPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGL 60
            + DIY ++Q  L V DP +++EA  KE+W  AMKEE+ AIEKN TW++V+LPE KN  G+
Sbjct: 747  LRDIYETTQV-LFVADPTTFEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGV 806

Query: 61   KWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSPAACFET-------------- 120
            KWV++TK+ ADGS++K KARLVA GYA QH +D+++TFSP A FET              
Sbjct: 807  KWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETIRTLLALAAHMHWC 866

Query: 121  -------SVFLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLKQAPRARYSKIDGY 180
                   S FLNGEL EEVYV +PEGF+    EE VY+L KALYGLKQAPRA YSKID Y
Sbjct: 867  VYQFDVKSAFLNGELVEEVYVSQPEGFIVPGKEEHVYRLKKALYGLKQAPRAWYSKIDSY 926

Query: 181  FQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTD 240
            F +NGF+RS +EP LY K+ GKND +I+CLYVDD+IY  SS+SL+ EFK+ MK KFEM+D
Sbjct: 927  FVENGFERSKSEPNLYLKRQGKNDLLIICLYVDDMIYMGSSSSLINEFKACMKKKFEMSD 986

Query: 241  LGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMNVNKKLQQNDGVEM 300
            LGLLHFFLGLEV Q + G+F+SQ+KYA DLLKKF M+NCK   TPMN N+KLQ  DG E 
Sbjct: 987  LGLLHFFLGLEVKQVEDGVFVSQRKYAVDLLKKFNMLNCKVVATPMNSNEKLQAEDGTER 1046

Query: 301  TDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGI 360
             DA+ FRSLVGGLIYLTHTRPDI++++GVISRFM CPS+ H GAAKR+++YIAGT ++GI
Sbjct: 1047 DDARMFRSLVGGLIYLTHTRPDIAFAVGVISRFMHCPSKQHLGAAKRLLRYIAGTYDFGI 1106

Query: 361  WYSK--------------ASSLDDRRSVSANVFTLASGVITWSSKKQAIVALSSSEAEYA 420
            WY                A  L+DR+S S  +F+L SG + WSSKKQA+ ALSSSEAEY 
Sbjct: 1107 WYGHVQEFKLVGYTDSDWAGCLEDRKSTSGYMFSLGSGAVCWSSKKQAVTALSSSEAEYT 1166

Query: 421  AATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHIDIFFHFIC 464
            AATS+ACQA+WLRR+L ++  E E  TVI+ DNKA I+MTKNPT+H RTKH+DI  HFI 
Sbjct: 1167 AATSSACQAVWLRRILADINQEHEEPTVIYCDNKAAIAMTKNPTYHGRTKHVDIRVHFIR 1226

[Close]

BLAST of Cmc06g0171441 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 6.1e-85
Identity = 185/507 (36.49%), Postives = 300/507 (59.17%), Query Frame = 0


Query: 5    YNSSQFSLMVFD--PVSYDEATS---KEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANG 64
            Y S+++ L+  D  P S  E  S   K +  +AM+EEM +++KNGT+K+V+LP+GK    
Sbjct: 797  YPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLK 856

Query: 65   LKWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSP-------------AACFET 124
             KWV+K K   D  L + KARLV  G+  +  IDF+E FSP             AA  + 
Sbjct: 857  CKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDL 916

Query: 125  SV--------FLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLKQAPRARYSKIDG 184
             V        FL+G+L+EE+Y+++PEGF     +  V KL K+LYGLKQAPR  Y K D 
Sbjct: 917  EVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDS 976

Query: 185  YFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMT 244
            + +   + ++ ++P +Y K+  +N+FII+ LYVDD++       L+A+ K  +   F+M 
Sbjct: 977  FMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMK 1036

Query: 245  DLGLLHFFLGLEVC--QTDGGIFISQKKYAKDLLKKFGMINCKPATTP----MNVNKKLQ 304
            DLG     LG+++   +T   +++SQ+KY + +L++F M N KP +TP    + ++KK+ 
Sbjct: 1037 DLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMC 1096

Query: 305  QNDGVEMTDAQR--FRSLVGGLIY-LTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQ 364
                 E  +  +  + S VG L+Y +  TRPDI++++GV+SRF++ P ++H+ A K +++
Sbjct: 1097 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1156

Query: 365  YIAGTIEYGIWY-------------SKASSLDDRRSVSANVFTLASGVITWSSKKQAIVA 424
            Y+ GT    + +               A  +D+R+S +  +FT + G I+W SK Q  VA
Sbjct: 1157 YLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVA 1216

Query: 425  LSSSEAEYAAATSAACQAIWLRRMLTEL-QHEQEGATVIFRDNKATISMTKNPTFHSRTK 463
            LS++EAEY AAT    + IWL+R L EL  H++E   V++ D+++ I ++KN  +H+RTK
Sbjct: 1217 LSTTEAEYIAATETGKEMIWLKRFLQELGLHQKE--YVVYCDSQSAIDLSKNSMYHARTK 1276

[Close]

BLAST of Cmc06g0171441 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 3.7e-82
Identity = 176/484 (36.36%), Postives = 264/484 (54.55%), Query Frame = 0


Query: 16   DPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGK-NANGLKWVYKTKFAADGSL 75
            +P +  +A   E+W+ AM  E+ A   N TW +V  P       G +W++  K+ +DGSL
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 76   EKQKARLVAIGYAHQHDIDFEETFSPAACFET---------------------SVFLNGE 135
             + KARLVA GY  +  +D+ ETFSP     +                     + FL G 
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 136  LQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPT 195
            L ++VY+ +P GF+ KD    V KL KALYGLKQAPRA Y ++  Y    GF  S ++ +
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 196  LYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 255
            L+  + GK+  + + +YVDDI+ T +  +L+     ++  +F + D   LH+FLG+E  +
Sbjct: 1135 LFVLQRGKS-IVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKR 1194

Query: 256  TDGGIFISQKKYAKDLLKKFGMINCKPATTPMNVNKKLQQNDGVEMTDAQRFRSLVGGLI 315
               G+ +SQ++Y  DLL +  MI  KP TTPM  + KL    G ++TD   +R +VG L 
Sbjct: 1195 VPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQ 1254

Query: 316  YLTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSKASSL------ 375
            YL  TRPDISY++  +S+FM  P+ +H  A KR+++Y+AGT  +GI+  K ++L      
Sbjct: 1255 YLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYS 1314

Query: 376  --------DDRRSVSANVFTLASGVITWSSKKQAIVALSSSEAEYAAATSAACQAIWLRR 435
                    DD  S +  +  L    I+WSSKKQ  V  SS+EAEY +  + + +  W+  
Sbjct: 1315 DADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICS 1374

Query: 436  MLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHIDIFFHFICDLVAKEEVSLSYCS 464
            +LTEL        VI+ DN     +  NP FHSR KHI I +HFI + V    + + + S
Sbjct: 1375 LLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVS 1434

[Close]

BLAST of Cmc06g0171441 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 9.1e-81
Identity = 172/484 (35.54%), Postives = 266/484 (54.96%), Query Frame = 0


Query: 16   DPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMV-DLPEGKNANGLKWVYKTKFAADGSL 75
            +P +  +A   ++W+QAM  E+ A   N TW +V   P      G +W++  KF +DGSL
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 76   EKQKARLVAIGYAHQHDIDFEETFSPAACFET---------------------SVFLNGE 135
             + KARLVA GY  +  +D+ ETFSP     +                     + FL G 
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 136  LQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPT 195
            L +EVY+ +P GFV KD  + V +L KA+YGLKQAPRA Y ++  Y    GF  S ++ +
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1117

Query: 196  LYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 255
            L+  + G++  I + +YVDDI+ T +   L+      +  +F + +   LH+FLG+E  +
Sbjct: 1118 LFVLQRGRS-IIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKR 1177

Query: 256  TDGGIFISQKKYAKDLLKKFGMINCKPATTPMNVNKKLQQNDGVEMTDAQRFRSLVGGLI 315
               G+ +SQ++Y  DLL +  M+  KP  TPM  + KL  + G ++ D   +R +VG L 
Sbjct: 1178 VPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQ 1237

Query: 316  YLTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSKASSL------ 375
            YL  TRPD+SY++  +S++M  P+ DH+ A KRV++Y+AGT ++GI+  K ++L      
Sbjct: 1238 YLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYS 1297

Query: 376  --------DDRRSVSANVFTLASGVITWSSKKQAIVALSSSEAEYAAATSAACQAIWLRR 435
                    DD  S +  +  L    I+WSSKKQ  V  SS+EAEY +  + + +  W+  
Sbjct: 1298 DADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICS 1357

Query: 436  MLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHIDIFFHFICDLVAKEEVSLSYCS 464
            +LTEL  +     VI+ DN     +  NP FHSR KHI + +HFI + V    + + + S
Sbjct: 1358 LLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVS 1417

[Close]

BLAST of Cmc06g0171441 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 266.2 bits (679), Expect = 7.2e-70
Identity = 162/491 (32.99%), Postives = 260/491 (52.95%), Query Frame = 0


Query: 15   FDPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSL 74
            FD + Y +   K  W++A+  E+ A + N TW +   PE KN    +WV+  K+   G+ 
Sbjct: 894  FDEIQYRD--DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNP 953

Query: 75   EKQKARLVAIGYAHQHDIDFEETFSPAACFET---------------------SVFLNGE 134
             + KARLVA G+  ++ ID+EETF+P A   +                     + FLNG 
Sbjct: 954  IRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGT 1013

Query: 135  LQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPT 194
            L+EE+Y++ P+G     + + V KL KA+YGLKQA R  +   +   ++  F  S+ +  
Sbjct: 1014 LKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRC 1073

Query: 195  LY-EKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVC 254
            +Y   KG  N+ I V LYVDD++  +   + +  FK ++  KF MTDL  +  F+G+ + 
Sbjct: 1074 IYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE 1133

Query: 255  QTDGGIFISQKKYAKDLLKKFGMINCKPATTPM--NVNKKLQQNDGVEMTDAQRFRSLVG 314
              +  I++SQ  Y K +L KF M NC   +TP+   +N +L  +D    T     RSL+G
Sbjct: 1134 MQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC---RSLIG 1193

Query: 315  GLIY-LTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSK------ 374
             L+Y +  TRPD++ ++ ++SR+    + + +   KRV++Y+ GTI+  + + K      
Sbjct: 1194 CLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFEN 1253

Query: 375  ----------ASSLDDRRSVSANVFTLAS-GVITWSSKKQAIVALSSSEAEYAAATSAAC 434
                      A S  DR+S +  +F +    +I W++K+Q  VA SS+EAEY A   A  
Sbjct: 1254 KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVR 1313

Query: 435  QAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHIDIFFHFICDLVAKEE 464
            +A+WL+ +LT +  + E    I+ DN+  IS+  NP+ H R KHIDI +HF  + V    
Sbjct: 1314 EALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNV 1373

[Close]

BLAST of Cmc06g0171441 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-36
Identity = 87/225 (38.67%), Postives = 129/225 (57.33%), Query Frame = 0


Query: 189 LYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKD 248
           LYVDDI+ T SSN+L+      + + F M DLG +H+FLG+++     G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 249 LLKKFGMINCKPATTPMNVNKKLQQNDGV---EMTDAQRFRSLVGGLIYLTHTRPDISYS 308
           +L   GM++CKP +TP+     L+ N  V   +  D   FRS+VG L YLT TRPDISY+
Sbjct: 65  ILNNAGMLDCKPMSTPL----PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 124

Query: 309 IGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSKASSLD--------------DRR 368
           + ++ + M  P+   F   KRV++Y+ GTI +G++  K S L+               RR
Sbjct: 125 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 184

Query: 369 SVSANVFTLASGVITWSSKKQAIVALSSSEAEYAAATSAACQAIW 397
           S +     L   +I+WS+K+Q  V+ SS+E EY A    A +  W
Sbjct: 185 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc06g0171441 vs. ExPASy TrEMBL
Match: A0A5A7TZP7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00180 PE=4 SV=1)

HSP 1 Score: 862.4 bits (2227), Expect = 8.4e-247
Identity = 433/450 (96.22%), Postives = 435/450 (96.67%), Query Frame = 0


Query: 18   VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 77
            VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ
Sbjct: 658  VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 717

Query: 78   KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVKKPEGFVKKDSEEKVYK 137
            KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYV+KPEGFVKKDSEEKVYK
Sbjct: 718  KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVEKPEGFVKKDSEEKVYK 777

Query: 138  LTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 197
            LTKALYGLKQAPRA YSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT
Sbjct: 778  LTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 837

Query: 198  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 257
            SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN
Sbjct: 838  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 897

Query: 258  CKPATTPMNVNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 317
            CKPATTP NVNKKLQQNDGVEM DAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS
Sbjct: 898  CKPATTPKNVNKKLQQNDGVEMADAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 957

Query: 318  RDHFGAAKRVMQYIAGTIEYGIWYSKASSLDDRRSVSANVFTLASGVITWSSKKQAIVAL 377
            RDHFGAAK+VMQYIAGTIEYGIW          RSVS NVFTLASGVITWSSKKQAIVAL
Sbjct: 958  RDHFGAAKQVMQYIAGTIEYGIW----------RSVSVNVFTLASGVITWSSKKQAIVAL 1017

Query: 378  SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHI 437
            SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKAT SMTKNPTFHSRTKHI
Sbjct: 1018 SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATTSMTKNPTFHSRTKHI 1077

Query: 438  DIFFHFICDLVAKEEVSLSYCSTHERGLIF 468
            DIFFHFICDLVAKEEVSLSYCSTHERGLIF
Sbjct: 1078 DIFFHFICDLVAKEEVSLSYCSTHERGLIF 1097

[Close]

BLAST of Cmc06g0171441 vs. ExPASy TrEMBL
Match: A0A5D3BU79 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001100 PE=4 SV=1)

HSP 1 Score: 862.4 bits (2227), Expect = 8.4e-247
Identity = 433/450 (96.22%), Postives = 435/450 (96.67%), Query Frame = 0


Query: 18   VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 77
            VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ
Sbjct: 670  VSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLEKQ 729

Query: 78   KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVKKPEGFVKKDSEEKVYK 137
            KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYV+KPEGFVKKDSEEKVYK
Sbjct: 730  KARLVAIGYAHQHDIDFEETFSPAACFETSVFLNGELQEEVYVEKPEGFVKKDSEEKVYK 789

Query: 138  LTKALYGLKQAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 197
            LTKALYGLKQAPRA YSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT
Sbjct: 790  LTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYT 849

Query: 198  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 257
            SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN
Sbjct: 850  SSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMIN 909

Query: 258  CKPATTPMNVNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 317
            CKPATTP NVNKKLQQNDGVEM DAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS
Sbjct: 910  CKPATTPKNVNKKLQQNDGVEMADAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPS 969

Query: 318  RDHFGAAKRVMQYIAGTIEYGIWYSKASSLDDRRSVSANVFTLASGVITWSSKKQAIVAL 377
            RDHFGAAK+VMQYIAGTIEYGIW          RSVS NVFTLASGVITWSSKKQAIVAL
Sbjct: 970  RDHFGAAKQVMQYIAGTIEYGIW----------RSVSVNVFTLASGVITWSSKKQAIVAL 1029

Query: 378  SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHI 437
            SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKAT SMTKNPTFHSRTKHI
Sbjct: 1030 SSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATTSMTKNPTFHSRTKHI 1089

Query: 438  DIFFHFICDLVAKEEVSLSYCSTHERGLIF 468
            DIFFHFICDLVAKEEVSLSYCSTHERGLIF
Sbjct: 1090 DIFFHFICDLVAKEEVSLSYCSTHERGLIF 1109

[Close]

BLAST of Cmc06g0171441 vs. ExPASy TrEMBL
Match: A0A5A7URA0 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002180 PE=4 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 1.7e-202
Identity = 375/451 (83.15%), Postives = 386/451 (85.59%), Query Frame = 0


Query: 48  MVDLPEGKNANGLKWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSPAACFET- 107
           MVDLPEGK A GLKWVYK+KFAADGSLEK KA LVA GYA QH IDFEETFSP A FET 
Sbjct: 1   MVDLPEGKKAIGLKWVYKSKFAADGSLEKHKACLVAKGYAQQHGIDFEETFSPLARFETM 60

Query: 108 --------------------SVFLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLK 167
                               S FLNGELQEEVYV++ EGF KKDSEEKVYKLTKALYGLK
Sbjct: 61  RIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLK 120

Query: 168 QAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAE 227
           QAPRA YSKIDGYFQQNGFKRSANEPTLY KKGGKNDFIIVCLYVDDIIYTSSS SLVAE
Sbjct: 121 QAPRAWYSKIDGYFQQNGFKRSANEPTLYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAE 180

Query: 228 FKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMN 287
           FKSHMKNKFEMTDLGLLHFFLGLEVCQT+GGIFISQKKYAKDLLKKFGMINCKPAT P+N
Sbjct: 181 FKSHMKNKFEMTDLGLLHFFLGLEVCQTEGGIFISQKKYAKDLLKKFGMINCKPATRPIN 240

Query: 288 VNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKR 347
           VN+KLQQNDG EM +AQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQ PSRDHF AAKR
Sbjct: 241 VNEKLQQNDGAEMANAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQRPSRDHFRAAKR 300

Query: 348 VMQYIAGTIEYGIWYSK--------------ASSLDDRRSVSANVFTLASGVITWSSKKQ 407
           VM+YIAGTIEYGIW SK              ASSL DRRSVSANVFTL  GVITWS KKQ
Sbjct: 301 VMRYIAGTIEYGIWCSKVSNFKLCGFTDSDWASSLGDRRSVSANVFTLGLGVITWSLKKQ 360

Query: 408 AIVALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHS 464
           A  ALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIF DNKATISMTKNPTFHS
Sbjct: 361 ATAALSSSEAEYAAATSAACQAIWLRRMLTELQHEQEGATVIFCDNKATISMTKNPTFHS 420

[Close]

BLAST of Cmc06g0171441 vs. ExPASy TrEMBL
Match: A0A5D3DVG4 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00860 PE=4 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 5.4e-169
Identity = 316/385 (82.08%), Postives = 325/385 (84.42%), Query Frame = 0


Query: 48  MVDLPEGKNANGLKWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSPAACFET- 107
           MVDLPEGKNA GLKWVYK+KFAADGSLEK KARLVA GYA QH IDFEETFSP A FET 
Sbjct: 1   MVDLPEGKNAIGLKWVYKSKFAADGSLEKHKARLVAKGYAQQHGIDFEETFSPLARFETM 60

Query: 108 --------------------SVFLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLK 167
                               S FLNGELQEEVYV++ EGF KKDSEEKVYKLTKALYGLK
Sbjct: 61  RIVLALAVQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLK 120

Query: 168 QAPRARYSKIDGYFQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAE 227
           QAPRA YSKIDGYFQQNGFKRSANEPTLY KKGGKNDFIIVCLYVDDIIYTSSS SLVAE
Sbjct: 121 QAPRAWYSKIDGYFQQNGFKRSANEPTLYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAE 180

Query: 228 FKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMN 287
           FKSHMKNKFEM DLGLLHFFLGLEVCQT+GGIFISQKKYAKDLLKKFGMINCKP T PMN
Sbjct: 181 FKSHMKNKFEMIDLGLLHFFLGLEVCQTEGGIFISQKKYAKDLLKKFGMINCKPTTRPMN 240

Query: 288 VNKKLQQNDGVEMTDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKR 347
           VN+KLQQNDG EM +AQRFRSLVGGLIYLTHTRPDISYSIGVI +FMQ PSRDHFGAAKR
Sbjct: 241 VNEKLQQNDGAEMANAQRFRSLVGGLIYLTHTRPDISYSIGVIFKFMQRPSRDHFGAAKR 300

Query: 348 VMQYIAGTIEYGIWYSK--------------ASSLDDRRSVSANVFTLASGVITWSSKKQ 398
           VM+YIAGTIEYGIWYSK              ASSLDDRRSVSANVFTL  GVITWSSKKQ
Sbjct: 301 VMRYIAGTIEYGIWYSKVSDFKLCGFTDSDWASSLDDRRSVSANVFTLGLGVITWSSKKQ 360

[Close]

BLAST of Cmc06g0171441 vs. ExPASy TrEMBL
Match: A0A438G6H0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2082 PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 7.0e-169
Identity = 299/498 (60.04%), Postives = 371/498 (74.50%), Query Frame = 0


Query: 1    MEDIYNSSQFSLMVFDPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGL 60
            + DIY ++Q  L V DP +++EA  KE+W  AMKEE+ AIEKN TW++V+LPE KN  G+
Sbjct: 747  LRDIYETTQV-LFVADPTTFEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGV 806

Query: 61   KWVYKTKFAADGSLEKQKARLVAIGYAHQHDIDFEETFSPAACFET-------------- 120
            KWV++TK+ ADGS++K KARLVA GYA QH +D+++TFSP A FET              
Sbjct: 807  KWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETIRTLLALAAHMHWC 866

Query: 121  -------SVFLNGELQEEVYVKKPEGFVKKDSEEKVYKLTKALYGLKQAPRARYSKIDGY 180
                   S FLNGEL EEVYV +PEGF+    EE VY+L KALYGLKQAPRA YSKID Y
Sbjct: 867  VYQFDVKSAFLNGELVEEVYVSQPEGFIVPGKEEHVYRLKKALYGLKQAPRAWYSKIDSY 926

Query: 181  FQQNGFKRSANEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTD 240
            F +NGF+RS +EP LY K+ GKND +I+CLYVDD+IY  SS+SL+ EFK+ MK KFEM+D
Sbjct: 927  FVENGFERSKSEPNLYLKRQGKNDLLIICLYVDDMIYMGSSSSLINEFKACMKKKFEMSD 986

Query: 241  LGLLHFFLGLEVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMNVNKKLQQNDGVEM 300
            LGLLHFFLGLEV Q + G+F+SQ+KYA DLLKKF M+NCK   TPMN N+KLQ  DG E 
Sbjct: 987  LGLLHFFLGLEVKQVEDGVFVSQRKYAVDLLKKFNMLNCKVVATPMNSNEKLQAEDGTER 1046

Query: 301  TDAQRFRSLVGGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGI 360
             DA+ FRSLVGGLIYLTHTRPDI++++GVISRFM CPS+ H GAAKR+++YIAGT ++GI
Sbjct: 1047 DDARMFRSLVGGLIYLTHTRPDIAFAVGVISRFMHCPSKQHLGAAKRLLRYIAGTYDFGI 1106

Query: 361  WYSK--------------ASSLDDRRSVSANVFTLASGVITWSSKKQAIVALSSSEAEYA 420
            WY                A  L+DR+S S  +F+L SG + WSSKKQA+ ALSSSEAEY 
Sbjct: 1107 WYGHVQEFKLVGYTDSDWAGCLEDRKSTSGYMFSLGSGAVCWSSKKQAVTALSSSEAEYT 1166

Query: 421  AATSAACQAIWLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHIDIFFHFIC 464
            AATS+ACQA+WLRR+L ++  E E  TVI+ DNKA I+MTKNPT+H RTKH+DI  HFI 
Sbjct: 1167 AATSSACQAVWLRRILADINQEHEEPTVIYCDNKAAIAMTKNPTYHGRTKHVDIRVHFIR 1226

[Close]

BLAST of Cmc06g0171441 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 305.8 bits (782), Expect = 5.8e-83
Identity = 180/469 (38.38%), Postives = 263/469 (56.08%), Query Frame = 0


Query: 16  DPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLE 75
           +P +Y+EA     W  AM +E+ A+E   TW++  LP  K   G KWVYK K+ +DG++E
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 76  KQKARLVAIGYAHQHDIDFEETFSPAACFETSV----------------------FLNGE 135
           + KARLVA GY  Q  IDF ETFSP  C  TSV                      FLNG+
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSP-VCKLTSVKLILAISAIYNFTLHQLDISNAFLNGD 204

Query: 136 LQEEVYVKKPEGFVKKDSE----EKVYKLTKALYGLKQAPRARYSKIDGYFQQNGFKRSA 195
           L EE+Y+K P G+  +  +      V  L K++YGLKQA R  + K        GF +S 
Sbjct: 205 LDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSH 264

Query: 196 NEPTLYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGL 255
           ++ T Y  K     F+ V +YVDDII  S++++ V E KS +K+ F++ DLG L +FLGL
Sbjct: 265 SDHT-YFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGL 324

Query: 256 EVCQTDGGIFISQKKYAKDLLKKFGMINCKPATTPMNVNKKLQQNDGVEMTDAQRFRSLV 315
           E+ ++  GI I Q+KYA DLL + G++ CKP++ PM+ +     + G +  DA+ +R L+
Sbjct: 325 EIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLI 384

Query: 316 GGLIYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSKASSL-- 375
           G L+YL  TR DIS+++  +S+F + P   H  A  +++ YI GT+  G++YS  + +  
Sbjct: 385 GRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQL 444

Query: 376 ------------DDRRSVSANVFTLASGVITWSSKKQAIVALSSSEAEYAAATSAACQAI 435
                       D RRS +     L + +I+W SKKQ +V+ SS+EAEY A + A  + +
Sbjct: 445 QVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMM 504

Query: 436 WLRRMLTELQHEQEGATVIFRDNKATISMTKNPTFHSRTKHIDIFFHFI 445
           WL +   ELQ      T++F DN A I +  N  FH RTKHI+   H +
Sbjct: 505 WLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551

[Close]

BLAST of Cmc06g0171441 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 9.7e-38
Identity = 87/225 (38.67%), Postives = 129/225 (57.33%), Query Frame = 0


Query: 189 LYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQTDGGIFISQKKYAKD 248
           LYVDDI+ T SSN+L+      + + F M DLG +H+FLG+++     G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 249 LLKKFGMINCKPATTPMNVNKKLQQNDGV---EMTDAQRFRSLVGGLIYLTHTRPDISYS 308
           +L   GM++CKP +TP+     L+ N  V   +  D   FRS+VG L YLT TRPDISY+
Sbjct: 65  ILNNAGMLDCKPMSTPL----PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 124

Query: 309 IGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSKASSLD--------------DRR 368
           + ++ + M  P+   F   KRV++Y+ GTI +G++  K S L+               RR
Sbjct: 125 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 184

Query: 369 SVSANVFTLASGVITWSSKKQAIVALSSSEAEYAAATSAACQAIW 397
           S +     L   +I+WS+K+Q  V+ SS+E EY A    A +  W
Sbjct: 185 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc06g0171441 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-14
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 16  DPVSYDEATSKEKWQQAMKEEMTAIEKNGTWKMVDLPEGKNANGLKWVYKTKFAADGSLE 75
           +P S   A     W QAM+EE+ A+ +N TW +V  P  +N  G KWV+KTK  +DG+L+
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 76  KQKARLVAIGYAHQHDIDFEETFSPAACFET-SVFLNGELQEEV 119
           + KARLVA G+  +  I F ET+SP     T    LN   Q EV
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130

[Close]

BLAST of Cmc06g0171441 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.4e-05
Identity = 19/55 (34.55%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 293 IYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKRVMQYIAGTIEYGIWYSKASSL 348
           +YLT TRPD+++++  +S+F          A  +V+ Y+ GT+  G++YS  S L
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDL 55

The following BLAST results are available for this feature:

BLAST of Cmc06g0171441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046865.1	1.7e-246	96.22	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK03281.1	1.7e-246	96.22	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0056051.1	3.4e-202	83.15	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK27736.1	1.1e-168	82.08	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
RVW67792.1	1.4e-168	60.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc06g0171441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.1e-85	36.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	3.7e-82	36.36	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.1e-81	35.54	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	7.2e-70	32.99	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	1.4e-36	38.67	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc06g0171441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZP7	8.4e-247	96.22	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BU79	8.4e-247	96.22	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7URA0	1.7e-202	83.15	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DVG4	5.4e-169	82.08	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A438G6H0	7.0e-169	60.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc06g0171441 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.8e-83	38.38	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.7e-38	38.67	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	2.6e-14	43.27	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	6.4e-05	34.55	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 107..265 e-value: 2.8E-48 score: 164.6 coord: 43..105 e-value: 2.7E-11 score: 43.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 24..364
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 344..462 e-value: 3.66454E-44 score: 149.926
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 42..443

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0171441.1	Cmc06g0171441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding