Cmc06g0171241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0171241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr06: 27041051 .. 27041971 (-)
RNA-Seq Expression	Cmc06g0171241
Synteny	Cmc06g0171241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTCTTAGTAATGTTCTATATGTCCCTTCCATACATAGGAACCTGGTGTCTAAGAGCCTATTGAATCGAGTCGGGCTTAAAATTGTACTGGAAGTTGACAAAGTTGTCCTCACCAAAAATGGAGAATTTGTCGGTAATGGGTATCTGTCTAATGGTCTGTTTGTGCTAAACACAATTTCCATGAATGCGAATGCTTCTAGTTCTGCCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAAATCAGAAGCTTAAGGACTTGAGACTTATTAATACTTTTGAGTCGCATGAAACTGATAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACCTTTCAAACCAGTTGAAACTAGAACTACTAATCTGTTAGAGTTAATTCACTCGGATCTAGCCGATTTTAAAAACACTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGATTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAAGGCAGAATCTGAAAATCAGTTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGATGTGGTGAGTATTCCGATAAAACTCTTAAAGACTTTTGTGAGTCAAACGATATTATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTCTATCTGATAATATGAGGGGAGAAGCTGTGTCGTTTGCGTGTTTTGTTCTTAACAGGATTCCCCAGAAAAGGCTATACAAAACTCCCTATGAACTCTAA

mRNA sequence

ATGATCGAGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTCTTAGTAATGTTCTATATGTCCCTTCCATACATAGGAACCTGGTGTCTAAGAGCCTATTGAATCGAGTCGGGCTTAAAATTGTACTGGAAGTTGACAAAGTTGTCCTCACCAAAAATGGAGAATTTGTCGGTAATGGGTATCTGTCTAATGGTCTGTTTGTGCTAAACACAATTTCCATGAATGCGAATGCTTCTAGTTCTGCCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAAATCAGAAGCTTAAGGACTTGAGACTTATTAATACTTTTGAGTCGCATGAAACTGATAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACCTTTCAAACCAGTTGAAACTAGAACTACTAATCTGTTAGAGTTAATTCACTCGGATCTAGCCGATTTTAAAAACACTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGATTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAAGGCAGAATCTGAAAATCAGTTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGATGTGGTGAGTATTCCGATAAAACTCTTAAAGACTTTTGTGAGTCAAACGATATTATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTCTATCTGATAATATGAGGGGAGAAGCTGTGTCGTTTGCGTGTTTTGTTCTTAACAGGATTCCCCAGAAAAGGCTATACAAAACTCCCTATGAACTCTAA

Coding sequence (CDS)

ATGATCGAGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTCTTAGTAATGTTCTATATGTCCCTTCCATACATAGGAACCTGGTGTCTAAGAGCCTATTGAATCGAGTCGGGCTTAAAATTGTACTGGAAGTTGACAAAGTTGTCCTCACCAAAAATGGAGAATTTGTCGGTAATGGGTATCTGTCTAATGGTCTGTTTGTGCTAAACACAATTTCCATGAATGCGAATGCTTCTAGTTCTGCCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAAATCAGAAGCTTAAGGACTTGAGACTTATTAATACTTTTGAGTCGCATGAAACTGATAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACCTTTCAAACCAGTTGAAACTAGAACTACTAATCTGTTAGAGTTAATTCACTCGGATCTAGCCGATTTTAAAAACACTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGATTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAAGGCAGAATCTGAAAATCAGTTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGATGTGGTGAGTATTCCGATAAAACTCTTAAAGACTTTTGTGAGTCAAACGATATTATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTCTATCTGATAATATGAGGGGAGAAGCTGTGTCGTTTGCGTGTTTTGTTCTTAACAGGATTCCCCAGAAAAGGCTATACAAAACTCCCTATGAACTCTAA

Protein sequence

MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEFVGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFESHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLYKTPYEL

Homology

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BLAST of Cmc06g0171241 vs. NCBI nr
Match: KAA0060696.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 591.3 bits (1523), Expect = 4.9e-165
Identity = 301/306 (98.37%), Postives = 301/306 (98.37%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           MI KGKVILKLTSGKTLSLSNVLYVPSI RNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF
Sbjct: 259 MIGKGKVILKLTSGKTLSLSNVLYVPSIRRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 318

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINT E
Sbjct: 319 VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSE 378

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY
Sbjct: 379 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 438

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII
Sbjct: 439 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 498

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYS QQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAV FACFVLNRIPQKRLY
Sbjct: 499 HEFTAPYSQQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVLFACFVLNRIPQKRLY 558

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 559 KTPYEL 564

[Close]

BLAST of Cmc06g0171241 vs. NCBI nr
Match: TYK03297.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 591.3 bits (1523), Expect = 4.9e-165
Identity = 301/306 (98.37%), Postives = 301/306 (98.37%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           MI KGKVILKLTSGKTLSLSNVLYVPSI RNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF
Sbjct: 281 MIGKGKVILKLTSGKTLSLSNVLYVPSIRRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 340

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINT E
Sbjct: 341 VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSE 400

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY
Sbjct: 401 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 460

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII
Sbjct: 461 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 520

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYS QQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAV FACFVLNRIPQKRLY
Sbjct: 521 HEFTAPYSQQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVLFACFVLNRIPQKRLY 580

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 581 KTPYEL 586

[Close]

BLAST of Cmc06g0171241 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 3.9e-146
Identity = 269/306 (87.91%), Postives = 284/306 (92.81%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           +I KGKVILKLTSGKTLSLSNVLYVPS+ RNLVS SLLNR GLKIVLE DKVVLTKNG+F
Sbjct: 374 VIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDF 433

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VG GYLSNGLFVLNTISMNANASSSAY+IES NLWHGRLGHVNFAS +KLKD+RLINT E
Sbjct: 434 VGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSE 493

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           +HET KCPIC+ESKFHKKPFKPVE RTT LLELIHSDLADF+ T SRGGKNYYVSFVDDY
Sbjct: 494 THETGKCPICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDY 553

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLI+TK+EA SMF+KFKAESENQLGK+IKRLRSDR GEYSDKTLK+FCESN II
Sbjct: 554 SRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGII 613

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM GEAV  ACF+LNRIP KRL 
Sbjct: 614 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLD 673

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 674 KTPYEL 679

[Close]

BLAST of Cmc06g0171241 vs. NCBI nr
Match: KAA0066784.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 526.2 bits (1354), Expect = 1.9e-145
Identity = 268/306 (87.58%), Postives = 283/306 (92.48%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           +I KGKVILKLTSGKTLSLSNVLYVPS+ RNLVS SLLNR GLKIVLE DKVVLTKNG F
Sbjct: 374 VIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNF 433

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VG GYLSNGLFVLNTISMNANASSSAY+IES NLWHGRLGHVNFAS +KLKD+RLINT E
Sbjct: 434 VGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSE 493

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           +HET KCP+C+ESKFHKKPFKPVE RTT LLELI+SDLADF+ T SRGGKNYYVSFVDDY
Sbjct: 494 THETGKCPVCIESKFHKKPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDY 553

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTK+EA SMF+KFKAESENQLGK+IKRLRSDR GEYSDKTLK+FCESN II
Sbjct: 554 SRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGII 613

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM GEAV  ACF+LNRIP KRL 
Sbjct: 614 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLD 673

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 674 KTPYEL 679

[Close]

BLAST of Cmc06g0171241 vs. NCBI nr
Match: ADN33807.1 (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 526.2 bits (1354), Expect = 1.9e-145
Identity = 268/306 (87.58%), Postives = 283/306 (92.48%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           +I KGKVILKLTSGKTLSLSNVLYVPS+ RNLVS SLLNR GLKIVLE DKVVLTKNG F
Sbjct: 374 VIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNF 433

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VG GYLSNGLFVLNTISMNANASSSAY+IES NLWHGRLGHVNFAS +KLKD+RLINT E
Sbjct: 434 VGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSE 493

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           +HET KCP+C+ESKFHKKPFKPVE RTT LLELI+SDLADF+ T SRGGKNYYVSFVDDY
Sbjct: 494 THETGKCPVCIESKFHKKPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDY 553

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTK+EA SMF+KFKAESENQLGK+IKRLRSDR GEYSDKTLK+FCESN II
Sbjct: 554 SRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGII 613

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM GEAV  ACF+LNRIP KRL 
Sbjct: 614 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLD 673

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 674 KTPYEL 679

[Close]

BLAST of Cmc06g0171241 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.6e-47
Identity = 107/291 (36.77%), Postives = 161/291 (55.33%), Query Frame = 0


Query: 5   GKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEFVGNG 64
           G + +K   G TL L +V +VP +  NL+S   L+R G +      K  LTK    +  G
Sbjct: 336 GDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKG 395

Query: 65  YLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFESHET 124
                L+  N        +++   I SV+LWH R+GH++    Q L    LI+  +    
Sbjct: 396 VARGTLYRTNAEICQGELNAAQDEI-SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTV 455

Query: 125 DKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSRFT 184
             C  C+  K H+  F+    R  N+L+L++SD+       S GG  Y+V+F+DD SR  
Sbjct: 456 KPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL 515

Query: 185 KIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHEFT 244
            +Y++KTKD+   +F KF A  E + G+K+KRLRSD  GEY+ +  +++C S+ I HE T
Sbjct: 516 WVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKT 575

Query: 245 APYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIP 296
            P +PQ NG+AER NRT+ E + +ML  + L  +  GEAV  AC+++NR P
Sbjct: 576 VPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSP 625

[Close]

BLAST of Cmc06g0171241 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-34
Identity = 99/311 (31.83%), Postives = 155/311 (49.84%), Query Frame = 0


Query: 8   ILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNG-EFVGNGYL 67
           I++L +   ++L +VL+      NL+S   L   G+ I  +   V ++KNG   V N  +
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM 393

Query: 68  SNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLK------DLRLINTFE 127
            N + V+N  + + NA        +  LWH R GH++     ++K      D  L+N  E
Sbjct: 394 LNNVPVINFQAYSINAKHK----NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 128 SHETDKCPICVESKFHKKPFKPVETRT--TNLLELIHSDLADFKNTTSRGGKNYYVSFVD 187
               + C  C+  K  + PFK ++ +T     L ++HSD+       +   KNY+V FVD
Sbjct: 454 L-SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVD 513

Query: 188 DYSRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESND 247
            ++ +   YLIK K +  SMF  F A+SE     K+  L  D   EY    ++ FC    
Sbjct: 514 QFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKG 573

Query: 248 IIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKR 307
           I +  T P++PQ NG++ER  RT+ E    M+  + L  +  GEAV  A +++NRIP + 
Sbjct: 574 ISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRA 633

[Close]

BLAST of Cmc06g0171241 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.8e-28
Identity = 96/304 (31.58%), Postives = 154/304 (50.66%), Query Frame = 0


Query: 12  TSGKTLSLSNVLYVPSIHRNLVSKSLL---NRVGLKIVLEVDKVVLTKNGEFVGNGYLSN 71
           TS ++L L+ VLYVP+IH+NL+S   L   NRV ++      +V     G  +  G   +
Sbjct: 359 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 418

Query: 72  GLF-----VLNTISMNANASSSAYVIESVNLWHGRLGHVNFA-SNQKLKDLRLINTFESH 131
            L+         +SM A+  S A    + + WH RLGH + A  N  + +  L     SH
Sbjct: 419 ELYEWPIASSQAVSMFASPCSKA----THSSWHSRLGHPSLAILNSVISNHSLPVLNPSH 478

Query: 132 ETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSR 191
           +   C  C  +K HK PF      ++  LE I+SD+       S     YYV FVD ++R
Sbjct: 479 KLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTR 538

Query: 192 FTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHE 251
           +T +Y +K K +    F+ FK+  EN+   +I  L SD  GE+    L+D+   + I H 
Sbjct: 539 YTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHF 598

Query: 252 FTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRL-YK 306
            + P++P+ NG++ERK+R + EM   +L  + +       A S A +++NR+P   L  +
Sbjct: 599 TSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQ 655

[Close]

BLAST of Cmc06g0171241 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-24
Identity = 89/304 (29.28%), Postives = 148/304 (48.68%), Query Frame = 0


Query: 12  TSGKTLSLSNVLYVPSIHRNLVSKSLL---NRVGLKIVLEVDKVVLTKNGEFVGNGYLSN 71
           T  + L+L N+LYVP+IH+NL+S   L   N V ++      +V     G  +  G   +
Sbjct: 380 TKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439

Query: 72  GLF-----VLNTISMNANASSSAYVIESVNLWHGRLGH-VNFASNQKLKDLRLINTFESH 131
            L+         +S+ A+ SS A    + + WH RLGH      N  + +  L     SH
Sbjct: 440 ELYEWPIASSQPVSLFASPSSKA----THSSWHARLGHPAPSILNSVISNYSLSVLNPSH 499

Query: 132 ETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSR 191
           +   C  C+ +K +K PF      +T  LE I+SD+       S     YYV FVD ++R
Sbjct: 500 KFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTR 559

Query: 192 FTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHE 251
           +T +Y +K K +    F+ FK   EN+   +I    SD  GE+    L ++   + I H 
Sbjct: 560 YTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHL 619

Query: 252 FTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRL-YK 306
            + P++P+ NG++ERK+R + E    +L  + +       A + A +++NR+P   L  +
Sbjct: 620 TSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLE 676

[Close]

BLAST of Cmc06g0171241 vs. ExPASy Swiss-Prot
Match: Q12337 (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 9.7e-15
Identity = 85/309 (27.51%), Postives = 137/309 (44.34%), Query Frame = 0


Query: 12  TSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVL---TKNGEFVGNGYLSN 71
           TS K L   N+ Y       L ++++        +   D  VL    K+G+F    +LS 
Sbjct: 508 TSIKALHTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVKHGDFY---WLSK 567

Query: 72  GLFVLNTISM----NANASSSAYVIESVNLWHGRLGHVNFASNQK-LKDLRLINTFESH- 131
              + + IS     N N S S        L H  LGH NF S QK LK   +    ES  
Sbjct: 568 KYLIPSHISKLTINNVNKSKSVNKY-PYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDI 627

Query: 132 -----ETDKCPICVESKF----HKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYY 191
                 T +CP C+  K     H K  +     +    + +H+D+    +   +   +Y+
Sbjct: 628 EWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYF 687

Query: 192 VSFVDDYSRFTKIYLIKTKDEAG--SMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLK 251
           +SF D+ +RF  +Y +  + E    ++F    A  +NQ   ++  ++ DR  EY++KTL 
Sbjct: 688 ISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLH 747

Query: 252 DFCESNDIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVL 299
            F  +  I   +T     + +G+AER NRTL      +L  SGL +++   AV F+  + 
Sbjct: 748 KFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIR 807

[Close]

BLAST of Cmc06g0171241 vs. ExPASy TrEMBL
Match: A0A5D3BV07 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001350 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.4e-165
Identity = 301/306 (98.37%), Postives = 301/306 (98.37%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           MI KGKVILKLTSGKTLSLSNVLYVPSI RNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF
Sbjct: 281 MIGKGKVILKLTSGKTLSLSNVLYVPSIRRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 340

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINT E
Sbjct: 341 VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSE 400

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY
Sbjct: 401 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 460

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII
Sbjct: 461 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 520

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYS QQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAV FACFVLNRIPQKRLY
Sbjct: 521 HEFTAPYSQQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVLFACFVLNRIPQKRLY 580

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 581 KTPYEL 586

[Close]

BLAST of Cmc06g0171241 vs. ExPASy TrEMBL
Match: A0A5A7V2H1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G006010 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.4e-165
Identity = 301/306 (98.37%), Postives = 301/306 (98.37%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           MI KGKVILKLTSGKTLSLSNVLYVPSI RNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF
Sbjct: 259 MIGKGKVILKLTSGKTLSLSNVLYVPSIRRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 318

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINT E
Sbjct: 319 VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSE 378

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY
Sbjct: 379 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 438

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII
Sbjct: 439 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 498

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYS QQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAV FACFVLNRIPQKRLY
Sbjct: 499 HEFTAPYSQQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVLFACFVLNRIPQKRLY 558

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 559 KTPYEL 564

[Close]

BLAST of Cmc06g0171241 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.9e-146
Identity = 269/306 (87.91%), Postives = 284/306 (92.81%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           +I KGKVILKLTSGKTLSLSNVLYVPS+ RNLVS SLLNR GLKIVLE DKVVLTKNG+F
Sbjct: 374 VIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDF 433

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VG GYLSNGLFVLNTISMNANASSSAY+IES NLWHGRLGHVNFAS +KLKD+RLINT E
Sbjct: 434 VGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSE 493

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           +HET KCPIC+ESKFHKKPFKPVE RTT LLELIHSDLADF+ T SRGGKNYYVSFVDDY
Sbjct: 494 THETGKCPICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDY 553

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLI+TK+EA SMF+KFKAESENQLGK+IKRLRSDR GEYSDKTLK+FCESN II
Sbjct: 554 SRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGII 613

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM GEAV  ACF+LNRIP KRL 
Sbjct: 614 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLD 673

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 674 KTPYEL 679

[Close]

BLAST of Cmc06g0171241 vs. ExPASy TrEMBL
Match: A0A5A7VHG8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001260 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 9.3e-146
Identity = 268/306 (87.58%), Postives = 283/306 (92.48%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           +I KGKVILKLTSGKTLSLSNVLYVPS+ RNLVS SLLNR GLKIVLE DKVVLTKNG F
Sbjct: 374 VIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNF 433

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           VG GYLSNGLFVLNTISMNANASSSAY+IES NLWHGRLGHVNFAS +KLKD+RLINT E
Sbjct: 434 VGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSE 493

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           +HET KCP+C+ESKFHKKPFKPVE RTT LLELI+SDLADF+ T SRGGKNYYVSFVDDY
Sbjct: 494 THETGKCPVCIESKFHKKPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDY 553

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTK+EA SMF+KFKAESENQLGK+IKRLRSDR GEYSDKTLK+FCESN II
Sbjct: 554 SRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGII 613

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM GEAV  ACF+LNRIP KRL 
Sbjct: 614 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLD 673

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 674 KTPYEL 679

[Close]

BLAST of Cmc06g0171241 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 9.3e-146
Identity = 268/306 (87.58%), Postives = 283/306 (92.48%), Query Frame = 0


Query: 1   MIEKGKVILKLTSGKTLSLSNVLYVPSIHRNLVSKSLLNRVGLKIVLEVDKVVLTKNGEF 60
           +I KGKVILKLTSGKTLSLSNVLYVPS+ RNLVS SLLNR GLKIVLE DKVVLTKNG+F
Sbjct: 311 VIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDF 370

Query: 61  VGNGYLSNGLFVLNTISMNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTFE 120
           +G GYLSNGLFVLNTISMNANASSSAY+IES NLWHGRLGHVNFAS +KLKD+RLINT E
Sbjct: 371 IGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSE 430

Query: 121 SHETDKCPICVESKFHKKPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDY 180
           +HET KC IC+ESKFHKKPFKPVE RTT LLELIHSDLADF+ T SRGGKNYYVSFVDDY
Sbjct: 431 THETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDY 490

Query: 181 SRFTKIYLIKTKDEAGSMFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDII 240
           SRFTKIYLIKTK+EA SMF+KFKAESENQLGK+IKRLRSDR GEYSDKTLK+FCESN II
Sbjct: 491 SRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGII 550

Query: 241 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMRGEAVSFACFVLNRIPQKRLY 300
           HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNM GEAV  ACF+LNRIP KRL 
Sbjct: 551 HEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLD 610

Query: 301 KTPYEL 307
           KTPYEL
Sbjct: 611 KTPYEL 616

The following BLAST results are available for this feature:

BLAST of Cmc06g0171241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060696.1	4.9e-165	98.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK03297.1	4.9e-165	98.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	3.9e-146	87.91	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066784.1	1.9e-145	87.58	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33807.1	1.9e-145	87.58	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of Cmc06g0171241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.6e-47	36.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.9e-34	31.83	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.8e-28	31.58	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.9e-24	29.28	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12337	9.7e-15	27.51	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc06g0171241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BV07	2.4e-165	98.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V2H1	2.4e-165	98.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZI1	1.9e-146	87.91	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VHG8	9.3e-146	87.58	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CM58	9.3e-146	87.58	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc06g0171241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 143..306 e-value: 2.0E-36 score: 127.1
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 152..249 e-value: 1.8E-12 score: 47.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 138..306 score: 22.481371
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 69..134 e-value: 1.6E-12 score: 47.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 84..284
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 84..284
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 147..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0171241.1	Cmc06g0171241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding