Cmc06g0170751 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0170751
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr06: 26219906 .. 26220577 (-)
RNA-Seq Expression	Cmc06g0170751
Synteny	Cmc06g0170751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATAACAACAACAAGGCCTGACATTATGCATTTTGTTATGCATTTTGTGAGTTTGATCAATAGATACATGAAAAATCCAACAAAGATGCATCTTTTTGCTGCCAAAAGAATTTTTCGGTACTTGCAAGGAACAAAAGATTATGGATTGTTTTACAAGAATGTGGTGAAGTCATATTTTGTTGGATTTACTGACAGTGATTATGCAGGTGATATAGATGATAGGAAAAACACTTCAGGCTATGTCTTTATGCTTAGTTTAGGGGCTATTTCATGGTCATCGAAAAAACAGTCTATTTTTACTTTGTCTACAACTGAGGCTGAGTTCATAGCAGCAACTTCATATGTGTGTCAAGCCATTTGGTTAAAGAAAATTCTTGAAGAATTGCAGTTCAAACAAGAAGGATCCATTGCAATTTATTGCGACAACAGCTCAGTGATTAAACTTTCAAAAAATCCAGTTCTACACGGAAGAAGCAAGCACATGGATGTGAAGTTTCATTTCTTAAGGGATCTTACGAAGGATGGAACAATAGATGTTTTCTATTGTAAAAGTGAAGATCAAATTGCTAACATAATGACCAAGCCACTGAAGTTGTCCATGTTTCAGAAATTCAGGAAGTTGATGGGAGTTGCTCATTGGATGAACCTAAGTAAACTGAATGTTTGA

mRNA sequence

ATGTATATAACAACAACAAGGCCTGACATTATGCATTTTGTTATGCATTTTGTGAGTTTGATCAATAGATACATGAAAAATCCAACAAAGATGCATCTTTTTGCTGCCAAAAGAATTTTTCGGTACTTGCAAGGAACAAAAGATTATGGATTGTTTTACAAGAATGTGGTGAAGTCATATTTTGTTGGATTTACTGACAGTGATTATGCAGGTGATATAGATGATAGGAAAAACACTTCAGGCTATGTCTTTATGCTTAGTTTAGGGGCTATTTCATGGTCATCGAAAAAACAGTCTATTTTTACTTTGTCTACAACTGAGGCTGAGTTCATAGCAGCAACTTCATATGTGTGTCAAGCCATTTGGTTAAAGAAAATTCTTGAAGAATTGCAGTTCAAACAAGAAGGATCCATTGCAATTTATTGCGACAACAGCTCAGTGATTAAACTTTCAAAAAATCCAGTTCTACACGGAAGAAGCAAGCACATGGATGTGAAGTTTCATTTCTTAAGGGATCTTACGAAGGATGGAACAATAGATGTTTTCTATTGTAAAAGTGAAGATCAAATTGCTAACATAATGACCAAGCCACTGAAGTTGTCCATGTTTCAGAAATTCAGGAAGTTGATGGGAGTTGCTCATTGGATGAACCTAAGTAAACTGAATGTTTGA

Coding sequence (CDS)

ATGTATATAACAACAACAAGGCCTGACATTATGCATTTTGTTATGCATTTTGTGAGTTTGATCAATAGATACATGAAAAATCCAACAAAGATGCATCTTTTTGCTGCCAAAAGAATTTTTCGGTACTTGCAAGGAACAAAAGATTATGGATTGTTTTACAAGAATGTGGTGAAGTCATATTTTGTTGGATTTACTGACAGTGATTATGCAGGTGATATAGATGATAGGAAAAACACTTCAGGCTATGTCTTTATGCTTAGTTTAGGGGCTATTTCATGGTCATCGAAAAAACAGTCTATTTTTACTTTGTCTACAACTGAGGCTGAGTTCATAGCAGCAACTTCATATGTGTGTCAAGCCATTTGGTTAAAGAAAATTCTTGAAGAATTGCAGTTCAAACAAGAAGGATCCATTGCAATTTATTGCGACAACAGCTCAGTGATTAAACTTTCAAAAAATCCAGTTCTACACGGAAGAAGCAAGCACATGGATGTGAAGTTTCATTTCTTAAGGGATCTTACGAAGGATGGAACAATAGATGTTTTCTATTGTAAAAGTGAAGATCAAATTGCTAACATAATGACCAAGCCACTGAAGTTGTCCATGTTTCAGAAATTCAGGAAGTTGATGGGAGTTGCTCATTGGATGAACCTAAGTAAACTGAATGTTTGA

Protein sequence

MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMNLSKLNV

Homology

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BLAST of Cmc06g0170751 vs. NCBI nr
Match: KAF7154611.1 (hypothetical protein RHSIM_Rhsim01G0080600 [Rhododendron simsii])

HSP 1 Score: 322.4 bits (825), Expect = 3.1e-84
Identity = 161/217 (74.19%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
           MY+T TRPDI    M+ VSLI RYM+NPT++HL  AKRIFRYLQGT  +GLFYKN  +S 
Sbjct: 653 MYLTATRPDI----MYSVSLIIRYMENPTELHLLVAKRIFRYLQGTWKFGLFYKNGERSD 712

Query: 61  FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
             GFTDSDYAGD DDR++TSGYVFML  GA+SWSSKKQ I TLSTTEAEF+AATS VCQA
Sbjct: 713 LRGFTDSDYAGDQDDRRSTSGYVFMLGSGAVSWSSKKQPIVTLSTTEAEFVAATSCVCQA 772

Query: 121 IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
           IWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID
Sbjct: 773 IWLKKILEELYFKRQGAITIFCDNSSAIKLSKNPVLHGRSKHIDVKFHFLRDHTKDGTID 832

Query: 181 VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMN 218
           + +CKSEDQ+A+IMTKPLKL MF K R L+GV    N
Sbjct: 833 LIFCKSEDQVADIMTKPLKLGMFMKLRSLLGVCSMEN 865

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BLAST of Cmc06g0170751 vs. NCBI nr
Match: KAF7147957.1 (hypothetical protein RHSIM_Rhsim03G0172600 [Rhododendron simsii])

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-83
Identity = 158/217 (72.81%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
           MY+T TRPDI    M+ VSLI+RYM+NPT++HL  AKRIFRYLQGT  +GLFYK   +S 
Sbjct: 621 MYLTATRPDI----MYSVSLISRYMENPTELHLLVAKRIFRYLQGTWKFGLFYKKGERSD 680

Query: 61  FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
             GFTDSDYAGD DDR++TSGYVFML  GA+SWSSKKQ I TLSTTEAEF+AATS VCQA
Sbjct: 681 LRGFTDSDYAGDQDDRRSTSGYVFMLGSGAVSWSSKKQPIVTLSTTEAEFVAATSCVCQA 740

Query: 121 IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
           IWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID
Sbjct: 741 IWLKKILEELYFKRQGAITIFCDNSSAIKLSKNPVLHGRSKHIDVKFHFLRDHTKDGTID 800

Query: 181 VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMN 218
           + +CKSEDQ+A+IMTKPLKL MF K + L+G+    N
Sbjct: 801 LIFCKSEDQVADIMTKPLKLGMFMKLQNLLGICSMEN 833

[Close]

BLAST of Cmc06g0170751 vs. NCBI nr
Match: KAF7150925.1 (hypothetical protein RHSIM_Rhsim02G0113200 [Rhododendron simsii])

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-83
Identity = 158/217 (72.81%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
           MY+T TRPDI    M+ VSLI+RYM+NPT++HL  AKRIFRYLQGT  +GLFYK   +S 
Sbjct: 306 MYLTATRPDI----MYSVSLISRYMENPTELHLLVAKRIFRYLQGTWKFGLFYKKGERSD 365

Query: 61  FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
             GFTDSDYAGD DDR++TSGYVFML  GA+SWSSKKQ I TLSTTEAEF+AATS VCQA
Sbjct: 366 LRGFTDSDYAGDQDDRRSTSGYVFMLGSGAVSWSSKKQPIVTLSTTEAEFVAATSCVCQA 425

Query: 121 IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
           IWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID
Sbjct: 426 IWLKKILEELYFKRQGAITIFCDNSSAIKLSKNPVLHGRSKHIDVKFHFLRDHTKDGTID 485

Query: 181 VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMN 218
           + +CKSEDQ+A+IMTKPLKL MF K + L+G+    N
Sbjct: 486 LIFCKSEDQVADIMTKPLKLGMFMKLQNLLGICSMEN 518

[Close]

BLAST of Cmc06g0170751 vs. NCBI nr
Match: KAF7132250.1 (hypothetical protein RHSIM_Rhsim09G0033700 [Rhododendron simsii])

HSP 1 Score: 318.2 bits (814), Expect = 5.8e-83
Identity = 157/212 (74.06%), Postives = 181/212 (85.38%), Query Frame = 0


Query: 1    MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
            MY+T TRPDI    M+ VSLI+RYM+NPT++HL  AKRIFRYLQGT  +GLFYK   +S 
Sbjct: 1154 MYLTATRPDI----MYSVSLISRYMENPTELHLLVAKRIFRYLQGTWKFGLFYKKGERSD 1213

Query: 61   FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
              GFTDSDYAGD DDR++TSGYVFML  GA+SWSSKKQ I TLSTTEAEF+AATS VCQA
Sbjct: 1214 LRGFTDSDYAGDQDDRRSTSGYVFMLGSGAVSWSSKKQPIVTLSTTEAEFVAATSCVCQA 1273

Query: 121  IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
            IWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID
Sbjct: 1274 IWLKKILEELYFKRQGAITIFCDNSSAIKLSKNPVLHGRSKHIDVKFHFLRDHTKDGTID 1333

Query: 181  VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGV 213
            + +CKSEDQ+A+IMTKPLKL MF K + L+G+
Sbjct: 1334 LIFCKSEDQVADIMTKPLKLGMFMKLQNLLGL 1361

[Close]

BLAST of Cmc06g0170751 vs. NCBI nr
Match: KAB1210584.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morella rubra])

HSP 1 Score: 312.0 bits (798), Expect = 4.2e-81
Identity = 153/214 (71.50%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 1   MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
           MY+T TRPDI    MH VS+I+RYM+ PT++HL AAKRI RYLQGTK++GLF+K    S 
Sbjct: 77  MYLTATRPDI----MHAVSVISRYMECPTEIHLLAAKRILRYLQGTKEFGLFFKKGENSD 136

Query: 61  FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
            VGFT+SDYAGD DDRK+TSGYVFML  G +SWSSKKQ I TLSTTEAEF+AAT+  CQA
Sbjct: 137 LVGFTNSDYAGDSDDRKSTSGYVFMLGTGVVSWSSKKQPIVTLSTTEAEFVAATACACQA 196

Query: 121 IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
           IWLKKILEELQFK++G   IYCDNSS IKLSKNPVLHGRSKH+DVK+HFLRDLT DG I+
Sbjct: 197 IWLKKILEELQFKEDGPTLIYCDNSSAIKLSKNPVLHGRSKHIDVKYHFLRDLTNDGIIN 256

Query: 181 VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAH 215
           + YC+SEDQIA+I+TKPLK   FQK R+L+GV +
Sbjct: 257 LVYCRSEDQIADILTKPLKFPAFQKLRELLGVCN 286

[Close]

BLAST of Cmc06g0170751 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-39
Identity = 88/207 (42.51%), Postives = 133/207 (64.25%), Query Frame = 0


Query: 6    TRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFT 65
            TRPDI     H V +++R+++NP K H  A K I RYL+GT    L +         G+T
Sbjct: 1125 TRPDI----AHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYT 1184

Query: 66   DSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKK 125
            D+D AGDID+RK+++GY+F  S GAISW SK Q    LSTTEAE+IAAT    + IWLK+
Sbjct: 1185 DADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKR 1244

Query: 126  ILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCK 185
             L+EL   Q+    +YCD+ S I LSKN + H R+KH+DV++H++R++  D ++ V    
Sbjct: 1245 FLQELGLHQK-EYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKIS 1304

Query: 186  SEDQIANIMTKPLKLSMFQKFRKLMGV 213
            + +  A+++TK +  + F+  ++L+G+
Sbjct: 1305 TNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc06g0170751 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.5e-37
Identity = 82/211 (38.86%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 2    YITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYF 61
            Y+  TRPDI     + V+ ++++M  PT+ HL A KRI RYL GT ++G+F K       
Sbjct: 1254 YLAFTRPDI----SYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSL 1313

Query: 62   VGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAI 121
              ++D+D+AGD DD  +T+GY+  L    ISWSSKKQ     S+TEAE+ +  +   +  
Sbjct: 1314 HAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQ 1373

Query: 122  WLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDV 181
            W+  +L EL  +      IYCDN     L  NPV H R KH+ + +HF+R+  + G + V
Sbjct: 1374 WICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRV 1433

Query: 182  FYCKSEDQIANIMTKPLKLSMFQKFRKLMGV 213
             +  + DQ+A+ +TKPL  + FQ F   +GV
Sbjct: 1434 VHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Cmc06g0170751 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-36
Identity = 81/211 (38.39%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 2    YITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYF 61
            Y+  TRPD+     + V+ +++YM  PT  H  A KR+ RYL GT D+G+F K       
Sbjct: 1237 YLAFTRPDL----SYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSL 1296

Query: 62   VGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAI 121
              ++D+D+AGD DD  +T+GY+  L    ISWSSKKQ     S+TEAE+ +  +   +  
Sbjct: 1297 HAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQ 1356

Query: 122  WLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDV 181
            W+  +L EL  +      IYCDN     L  NPV H R KH+ + +HF+R+  + G + V
Sbjct: 1357 WICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRV 1416

Query: 182  FYCKSEDQIANIMTKPLKLSMFQKFRKLMGV 213
             +  + DQ+A+ +TKPL    FQ F + +GV
Sbjct: 1417 VHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc06g0170751 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-34
Identity = 82/216 (37.96%), Postives = 127/216 (58.80%), Query Frame = 0


Query: 1    MYI-TTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKN--VV 60
            MYI   TRPD+       V++++RY            KR+ RYL+GT D  L +K     
Sbjct: 1189 MYIMLCTRPDL----TTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAF 1248

Query: 61   KSYFVGFTDSDYAGDIDDRKNTSGYVF-MLSLGAISWSSKKQSIFTLSTTEAEFIAATSY 120
            ++  +G+ DSD+AG   DRK+T+GY+F M     I W++K+Q+    S+TEAE++A    
Sbjct: 1249 ENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEA 1308

Query: 121  VCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKD 180
            V +A+WLK +L  +  K E  I IY DN   I ++ NP  H R+KH+D+K+HF R+  ++
Sbjct: 1309 VREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQN 1368

Query: 181  GTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGV 213
              I + Y  +E+Q+A+I TKPL  + F + R  +G+
Sbjct: 1369 NVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc06g0170751 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.5e-20
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 1   MYI-TTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKS 60
           MY+   TRPD+       V +++++  +P   H  A KR+ RYLQ T+ YGL +     +
Sbjct: 14  MYLMVVTRPDL----AAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTA 73

Query: 61  YFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQ 120
             VG++D+D+AGD++ R++TSGY+F L+ G +SW SKKQ    LS+TE E++A +    +
Sbjct: 74  KLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQE 133

Query: 121 AIWL 124
           A+WL
Sbjct: 134 AVWL 133

[Close]

BLAST of Cmc06g0170751 vs. ExPASy TrEMBL
Match: A0A6A1VCV3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morella rubra OX=262757 GN=CJ030_MR6G010880 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.0e-81
Identity = 153/214 (71.50%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 1   MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
           MY+T TRPDI    MH VS+I+RYM+ PT++HL AAKRI RYLQGTK++GLF+K    S 
Sbjct: 77  MYLTATRPDI----MHAVSVISRYMECPTEIHLLAAKRILRYLQGTKEFGLFFKKGENSD 136

Query: 61  FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
            VGFT+SDYAGD DDRK+TSGYVFML  G +SWSSKKQ I TLSTTEAEF+AAT+  CQA
Sbjct: 137 LVGFTNSDYAGDSDDRKSTSGYVFMLGTGVVSWSSKKQPIVTLSTTEAEFVAATACACQA 196

Query: 121 IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
           IWLKKILEELQFK++G   IYCDNSS IKLSKNPVLHGRSKH+DVK+HFLRDLT DG I+
Sbjct: 197 IWLKKILEELQFKEDGPTLIYCDNSSAIKLSKNPVLHGRSKHIDVKYHFLRDLTNDGIIN 256

Query: 181 VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAH 215
           + YC+SEDQIA+I+TKPLK   FQK R+L+GV +
Sbjct: 257 LVYCRSEDQIADILTKPLKFPAFQKLRELLGVCN 286

[Close]

BLAST of Cmc06g0170751 vs. ExPASy TrEMBL
Match: A0A5B7B1Y6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_032401 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.2e-80
Identity = 153/212 (72.17%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
           MY+T TRPDI    MH VS+I+RYM+ PT++HL AAKRIFRYL+GTK++ LFYKN  KS 
Sbjct: 110 MYLTATRPDI----MHAVSVISRYMECPTEIHLLAAKRIFRYLKGTKEFRLFYKNGEKSD 169

Query: 61  FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
             GFTDSDYAGD DDRK+TS YVFM+  GAISWSSKKQ I TLS+TEAEF+AAT+  CQA
Sbjct: 170 LFGFTDSDYAGDSDDRKSTSRYVFMMGTGAISWSSKKQPIVTLSSTEAEFVAATARACQA 229

Query: 121 IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
           IWLKKIL+EL FK++G   IYCDNSS IKLSKNPVLHGRSKH+DVK+HFLRDLT DG I+
Sbjct: 230 IWLKKILKELHFKEDGPTHIYCDNSSAIKLSKNPVLHGRSKHIDVKYHFLRDLTNDGVIN 289

Query: 181 VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGV 213
           + YC+SEDQIA+I+TKPLK   FQK RKL+GV
Sbjct: 290 LIYCRSEDQIADILTKPLKFPTFQKPRKLLGV 317

[Close]

BLAST of Cmc06g0170751 vs. ExPASy TrEMBL
Match: A0A5D3BSY4 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00660 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 8.5e-80
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 68  DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKIL 127
           DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKIL
Sbjct: 140 DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKIL 199

Query: 128 EELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSE 187
           EELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSE
Sbjct: 200 EELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSE 259

Query: 188 DQIANIMTKPLKLSMFQKFRKLMGVAHWMNL 219
           DQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
Sbjct: 260 DQIANIMTKPLKLSMFQKFRKLMGVAHWMNL 290

[Close]

BLAST of Cmc06g0170751 vs. ExPASy TrEMBL
Match: A0A5A7V287 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004840 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 8.5e-80
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 68  DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKIL 127
           DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKIL
Sbjct: 178 DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKIL 237

Query: 128 EELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSE 187
           EELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSE
Sbjct: 238 EELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSE 297

Query: 188 DQIANIMTKPLKLSMFQKFRKLMGVAHWMNL 219
           DQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
Sbjct: 298 DQIANIMTKPLKLSMFQKFRKLMGVAHWMNL 328

[Close]

BLAST of Cmc06g0170751 vs. ExPASy TrEMBL
Match: A0A438I5N6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1909 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 148/213 (69.48%), Postives = 179/213 (84.04%), Query Frame = 0


Query: 1    MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSY 60
            MY+T TRPDI    MH VSLI+RYM+NPT++H  AAK+I RYLQGTKD+GLFYK   +S 
Sbjct: 1149 MYLTATRPDI----MHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSD 1208

Query: 61   FVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQA 120
             +GFTDSDYAGD D+R++TSGYVFML  GA+SWSSKKQ I TLSTTEAEF+AAT+  CQA
Sbjct: 1209 LIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATACACQA 1268

Query: 121  IWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTID 180
            IWL+KILEEL  KQ G+  I+CDNSS IKLSKNPVLHGRSKH+DVK++FLR+L+ DG ID
Sbjct: 1269 IWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRELSNDGVID 1328

Query: 181  VFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVA 214
            + YC+SE+Q+A+I TKPLKL+ F K RKL+GV+
Sbjct: 1329 LVYCRSENQVADIFTKPLKLAAFLKLRKLLGVS 1357

[Close]

BLAST of Cmc06g0170751 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-13
Identity = 42/121 (34.71%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 2   YITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYF 61
           Y+T TRPDI     + V+++ + M  PT       KR+ RY++GT  +GL+     K   
Sbjct: 109 YLTLTRPDI----SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNV 168

Query: 62  VGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAI 121
             F DSD+AG    R++T+G+   L    ISWS+K+Q   + S+TE E+ A      +  
Sbjct: 169 QAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELT 225

Query: 122 W 123
           W
Sbjct: 229 W 225

The following BLAST results are available for this feature:

BLAST of Cmc06g0170751 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7154611.1	3.1e-84	74.19	hypothetical protein RHSIM_Rhsim01G0080600 [Rhododendron simsii]	[more]
KAF7147957.1	2.0e-83	72.81	hypothetical protein RHSIM_Rhsim03G0172600 [Rhododendron simsii]	[more]
KAF7150925.1	2.0e-83	72.81	hypothetical protein RHSIM_Rhsim02G0113200 [Rhododendron simsii]	[more]
KAF7132250.1	5.8e-83	74.06	hypothetical protein RHSIM_Rhsim09G0033700 [Rhododendron simsii]	[more]
KAB1210584.1	4.2e-81	71.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morella rubra]	[more]

BLAST of Cmc06g0170751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-39	42.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	8.5e-37	38.86	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.5e-36	38.39	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.3e-34	37.96	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	9.5e-20	40.32	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc06g0170751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1VCV3	2.0e-81	71.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morella rubra OX=...	[more]
A0A5B7B1Y6	2.2e-80	72.17	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Davidia involu...	[more]
A0A5D3BSY4	8.5e-80	100.00	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7V287	8.5e-80	100.00	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A438I5N6	1.4e-79	69.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc06g0170751 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	3.0e-13	34.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 79..214
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 79..214
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 62..198 e-value: 4.18711E-76 score: 223.884
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 17..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0170751.1	Cmc06g0170751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding