Cmc06g0158041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0158041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon TyH3 Gag-Pol polyprotein
Location	CMiso1.1chr06: 6745141 .. 6745974 (-)
RNA-Seq Expression	Cmc06g0158041
Synteny	Cmc06g0158041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTGCCTCGTTTTAATTCCAATCAAGTGGAATTAGATAATGTATTTTATGTGCTTGAAATGAAGAAGAATTTGGTGTCAGTATCTCAATTAACTTCAGCTAGCAACTTCATCGTGTTTGGATCTAACAATGTTAAGGTGTATCATAATCTTAAAGTAAGTGGTACACCGCTGATGGAAGGACGAAGGATGGACTCCATCTACGTTATGTCAGCGGAGACTACCTACATAAACAAGACGCAGAAGAATGAAACAGCATATTTGTGGCATGCAAGACTTGGTCATGTTAGCTACAGCAAATTAAAGACAATAATAAACAAGTTCATGCTGAAGGGGTTGCCACAACTTGATATCAGAGAAGACATGGTATGTGTTGGTTTCCAGTATGGGAAAGCACATCAACCGCCATTTAAGCAGTCCAAATTTAGAGCAAAACAACCATTGGAGTTGGTACATTCAGATGTATTTGGTCTTGTCAAGCAATCTTCAATTAGTGGAATGCGCTACATGGTGACCTTTATTGATGACTTCTCCAGGTATGTTTGGGTGTTTTTTATGAAACAAAAGTCCGAAAAAATTATAAAACTTAAAAAATTCAAAGAACAAGTTAAAAATGAGTTAGGAAAGAGAATTCAATGTTTACGTTCAGATAACAGGGGAGAATATATCTCTAATGAATTCTCTCAATACTTGCAAAAGTATAAGATATGTCATCAGTTAACGTGTCTAAACACTTCACAACAAAATGGAGTGGCAGAAAGGAAAAATAGACATCTTGCAGATATATGTTGTAGCATGTCACATGCAAGTAATGTTCCAAGAAGATTCTAG

mRNA sequence

ATGACAGTGCCTCGTTTTAATTCCAATCAAGTGGAATTAGATAATGTATTTTATGTGCTTGAAATGAAGAAGAATTTGGTGTCAGTATCTCAATTAACTTCAGCTAGCAACTTCATCGTGTTTGGATCTAACAATGTTAAGGTGTATCATAATCTTAAAGTAAGTGGTACACCGCTGATGGAAGGACGAAGGATGGACTCCATCTACGTTATGTCAGCGGAGACTACCTACATAAACAAGACGCAGAAGAATGAAACAGCATATTTGTGGCATGCAAGACTTGGTCATGTTAGCTACAGCAAATTAAAGACAATAATAAACAAGTTCATGCTGAAGGGGTTGCCACAACTTGATATCAGAGAAGACATGGTATGTGTTGGTTTCCAGTATGGGAAAGCACATCAACCGCCATTTAAGCAGTCCAAATTTAGAGCAAAACAACCATTGGAGTTGGTACATTCAGATGTATTTGGTCTTGTCAAGCAATCTTCAATTAGTGGAATGCGCTACATGGTGACCTTTATTGATGACTTCTCCAGGTATGTTTGGGTGTTTTTTATGAAACAAAAGTCCGAAAAAATTATAAAACTTAAAAAATTCAAAGAACAAGTTAAAAATGAGTTAGGAAAGAGAATTCAATGTTTACGTTCAGATAACAGGGGAGAATATATCTCTAATGAATTCTCTCAATACTTGCAAAAGTATAAGATATGTCATCAGTTAACGTGTCTAAACACTTCACAACAAAATGGAGTGGCAGAAAGGAAAAATAGACATCTTGCAGATATATGTTGTAGCATGTCACATGCAAGTAATGTTCCAAGAAGATTCTAG

Coding sequence (CDS)

ATGACAGTGCCTCGTTTTAATTCCAATCAAGTGGAATTAGATAATGTATTTTATGTGCTTGAAATGAAGAAGAATTTGGTGTCAGTATCTCAATTAACTTCAGCTAGCAACTTCATCGTGTTTGGATCTAACAATGTTAAGGTGTATCATAATCTTAAAGTAAGTGGTACACCGCTGATGGAAGGACGAAGGATGGACTCCATCTACGTTATGTCAGCGGAGACTACCTACATAAACAAGACGCAGAAGAATGAAACAGCATATTTGTGGCATGCAAGACTTGGTCATGTTAGCTACAGCAAATTAAAGACAATAATAAACAAGTTCATGCTGAAGGGGTTGCCACAACTTGATATCAGAGAAGACATGGTATGTGTTGGTTTCCAGTATGGGAAAGCACATCAACCGCCATTTAAGCAGTCCAAATTTAGAGCAAAACAACCATTGGAGTTGGTACATTCAGATGTATTTGGTCTTGTCAAGCAATCTTCAATTAGTGGAATGCGCTACATGGTGACCTTTATTGATGACTTCTCCAGGTATGTTTGGGTGTTTTTTATGAAACAAAAGTCCGAAAAAATTATAAAACTTAAAAAATTCAAAGAACAAGTTAAAAATGAGTTAGGAAAGAGAATTCAATGTTTACGTTCAGATAACAGGGGAGAATATATCTCTAATGAATTCTCTCAATACTTGCAAAAGTATAAGATATGTCATCAGTTAACGTGTCTAAACACTTCACAACAAAATGGAGTGGCAGAAAGGAAAAATAGACATCTTGCAGATATATGTTGTAGCATGTCACATGCAAGTAATGTTCCAAGAAGATTCTAG

Protein sequence

MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLMEGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIREDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSRYVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQLTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF

Homology

[Close]

BLAST of Cmc06g0158041 vs. NCBI nr
Match: KAE8669333.1 (hypothetical protein F3Y22_tig00112249pilonHSYRG00290 [Hibiscus syriacus])

HSP 1 Score: 387.5 bits (994), Expect = 9.7e-104
Identity = 182/277 (65.70%), Postives = 230/277 (83.03%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+N+NQV+L +V++V  MKKNL+SV+QLTS+ ++++FG  +VKVY ++K+S TP M
Sbjct: 296 IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKVYRDVKISETPTM 355

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EGRR++SIYVMSAE+ Y+++T+KNET+ LWH RLGH+SYSKL  ++ K MLKGLPQLD+R
Sbjct: 356 EGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGHISYSKLSVMVKKSMLKGLPQLDVR 415

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGK HQ P+ +SKF+AK+PLELVHSDVFG VKQ SISGMRYMVTFIDDFSR
Sbjct: 416 TDTVCAGCQYGKVHQLPYDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSR 475

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVW+FFMK+KS+   K K+F++  + E+GK+I CLR+DNRGEY SNEFSQYL++ +I HQ
Sbjct: 476 YVWIFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLRTDNRGEYRSNEFSQYLRECRIRHQ 535

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT Q NGVAERKNRHL +IC SM HA NVP RF
Sbjct: 536 YTCANTPQHNGVAERKNRHLVEICRSMLHAKNVPGRF 572

[Close]

BLAST of Cmc06g0158041 vs. NCBI nr
Match: KAE8705435.1 (hypothetical protein F3Y22_tig00110429pilonHSYRG01243 [Hibiscus syriacus])

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-103
Identity = 184/277 (66.43%), Postives = 231/277 (83.39%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+N+NQV+L +V++V  MKKNL+SV+QLTS+ ++++FG  +VKVY ++K++ TP M
Sbjct: 372 IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKVYRDVKITETPTM 431

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EGRR++SIYVMSAE+ Y+++T+KNET+ LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 432 EGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGHVSYSKLSVMVKKSMLKGLPQLDVR 491

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+ +SKF+AK+PLELVHSDVFG VKQ SISGMRYMVTFIDDFSR
Sbjct: 492 TDTVCAGCQYGKAHQLPYDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSR 551

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F++  + E+GK+I CLR+DN GEY SNEFSQYL++ +I HQ
Sbjct: 552 YVWVFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQ 611

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNGVAERKNRHLA+IC SM HA NV  RF
Sbjct: 612 YTCANTPQQNGVAERKNRHLAEICRSMLHAKNVSGRF 648

[Close]

BLAST of Cmc06g0158041 vs. NCBI nr
Match: KAE8687058.1 (hypothetical protein F3Y22_tig00111024pilonHSYRG00006 [Hibiscus syriacus])

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-103
Identity = 184/277 (66.43%), Postives = 231/277 (83.39%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+N+NQV+L +V++V  MKKNL+SV+QLTS+ ++++FG  +VKVY ++K++ TP M
Sbjct: 271 IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKVYRDVKITETPTM 330

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EGRR++SIYVMSAE+ Y+++T+KNET+ LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 331 EGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGHVSYSKLSVMVKKSMLKGLPQLDVR 390

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+ +SKF+AK+PLELVHSDVFG VKQ SISGMRYMVTFIDDFSR
Sbjct: 391 TDTVCAGCQYGKAHQLPYDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSR 450

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F++  + E+GK+I CLR+DN GEY SNEFSQYL++ +I HQ
Sbjct: 451 YVWVFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQ 510

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNGVAERKNRHLA+IC SM HA NV  RF
Sbjct: 511 YTCANTPQQNGVAERKNRHLAEICRSMLHAKNVSGRF 547

[Close]

BLAST of Cmc06g0158041 vs. NCBI nr
Match: KAE8715296.1 (hypothetical protein F3Y22_tig00110183pilonHSYRG00102 [Hibiscus syriacus])

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-103
Identity = 184/277 (66.43%), Postives = 231/277 (83.39%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+N+NQV+L +V++V  MKKNL+SV+QLTS+ ++++FG  +VKVY ++K++ TP M
Sbjct: 372 IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKVYRDVKITETPTM 431

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EGRR++SIYVMSAE+ Y+++T+KNET+ LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 432 EGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGHVSYSKLSVMVKKSMLKGLPQLDVR 491

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+ +SKF+AK+PLELVHSDVFG VKQ SISGMRYMVTFIDDFSR
Sbjct: 492 TDTVCAGCQYGKAHQLPYDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSR 551

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F++  + E+GK+I CLR+DN GEY SNEFSQYL++ +I HQ
Sbjct: 552 YVWVFFMKEKSDTFSKFKEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQ 611

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNGVAERKNRHLA+IC SM HA NV  RF
Sbjct: 612 YTCANTPQQNGVAERKNRHLAEICRSMLHAKNVSGRF 648

[Close]

BLAST of Cmc06g0158041 vs. NCBI nr
Match: KAE8662552.1 (hypothetical protein F3Y22_tig00113302pilonHSYRG00055 [Hibiscus syriacus])

HSP 1 Score: 386.0 bits (990), Expect = 2.8e-103
Identity = 184/277 (66.43%), Postives = 230/277 (83.03%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+N+NQV+L +V++V  MKKNL+SV+QLTS+ ++++FG  +VKVY ++K++ TP M
Sbjct: 477 IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKVYRDVKITETPTM 536

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EGRR++SIYVMSAE+ Y+++T+KNET+ LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 537 EGRRLESIYVMSAESAYVDRTRKNETSDLWHMRLGHVSYSKLSVMVKKSMLKGLPQLDVR 596

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+ +SKF+AK+PLELVHSDVFG VKQ SISGMRYMVTFIDDFSR
Sbjct: 597 TDTVCAGCQYGKAHQLPYDESKFKAKEPLELVHSDVFGSVKQQSISGMRYMVTFIDDFSR 656

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F+   + E+GK+I CLR+DN GEY SNEFSQYL++ +I HQ
Sbjct: 657 YVWVFFMKEKSDTFSKFKEFRNSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQ 716

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNGVAERKNRHLA+IC SM HA NV  RF
Sbjct: 717 YTCANTPQQNGVAERKNRHLAEICRSMLHAKNVSGRF 753

[Close]

BLAST of Cmc06g0158041 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-31
Identity = 87/267 (32.58%), Postives = 138/267 (51.69%), Query Frame = 0


Query: 13  LDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLMEGRRMDSIYVMS 72
           L +V +V +++ NL+S   L        F +   +    L      + +G    ++Y  +
Sbjct: 350 LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWR----LTKGSLVIAKGVARGTLYRTN 409

Query: 73  AETTY--INKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIREDMVCVGFQY 132
           AE     +N  Q   +  LWH R+GH+S   L+ +  K ++       ++    C+   +
Sbjct: 410 AEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL---F 469

Query: 133 GKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSRYVWVFFMKQK 192
           GK H+  F+ S  R    L+LV+SDV G ++  S+ G +Y VTFIDD SR +WV+ +K K
Sbjct: 470 GKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 529

Query: 193 SEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQLTCLNTSQQN 252
            +     +KF   V+ E G++++ LRSDN GEY S EF +Y   + I H+ T   T Q N
Sbjct: 530 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 589

Query: 253 GVAERKNRHLADICCSMSHASNVPRRF 278
           GVAER NR + +   SM   + +P+ F
Sbjct: 590 GVAERMNRTIVEKVRSMLRMAKLPKSF 609

[Close]

BLAST of Cmc06g0158041 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-28
Identity = 88/279 (31.54%), Postives = 145/279 (51.97%), Query Frame = 0


Query: 7   NSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVF---GSNNVKVYHNLKVSGTPLMEGR 66
           +S  ++L+ V YV  + KNL+SV +L + +   V     S  VK  +    +G PL++G+
Sbjct: 360 SSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLN----TGVPLLQGK 419

Query: 67  RMDSIY----VMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDI 126
             D +Y      S   +         T   WH+RLGH S + L ++I+      LP L+ 
Sbjct: 420 TKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISN---HSLPVLNP 479

Query: 127 REDMV-CVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDF 186
              ++ C      K+H+ PF  S   + +PLE ++SDV+      SI   RY V F+D F
Sbjct: 480 SHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHF 539

Query: 187 SRYVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKIC 246
           +RY W++ +KQKS+       FK  V+N    RI  L SDN GE++      YL ++ I 
Sbjct: 540 TRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGIS 599

Query: 247 HQLTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
           H  +  +T + NG++ERK+RH+ ++  ++   ++VP+ +
Sbjct: 600 HFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTY 628

[Close]

BLAST of Cmc06g0158041 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 84/277 (30.32%), Postives = 142/277 (51.26%), Query Frame = 0


Query: 8   SNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVF---GSNNVKVYHNLKVSGTPLMEGRR 67
           S  + L N+ YV  + KNL+SV +L +A+   V     S  VK  +    +G PL++G+ 
Sbjct: 382 SRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLN----TGVPLLQGKT 441

Query: 68  MDSIY----VMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 127
            D +Y      S   +         T   WHARLGH + S L ++I+ + L  L      
Sbjct: 442 KDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLN--PSH 501

Query: 128 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 187
           + + C      K+++ PF QS   + +PLE ++SDV+     S     RY V F+D F+R
Sbjct: 502 KFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSH-DNYRYYVIFVDHFTR 561

Query: 188 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 247
           Y W++ +KQKS+       FK  ++N    RI    SDN GE+++    +Y  ++ I H 
Sbjct: 562 YTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHL 621

Query: 248 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            +  +T + NG++ERK+RH+ +   ++   +++P+ +
Sbjct: 622 TSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTY 649

[Close]

BLAST of Cmc06g0158041 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-11
Identity = 53/209 (25.36%), Postives = 95/209 (45.45%), Query Frame = 0


Query: 78  INKTQK-NETAY-LWHARLGHVSYSKLKTIINKFMLKGLPQLDIR----EDMVCVGFQYG 137
           +NK++  N+  Y L H  LGH ++  ++  + K  +  L + DI         C     G
Sbjct: 580 VNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIG 639

Query: 138 KA----HQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSRYVWVFFM 197
           K+    H    +     + +P + +H+D+FG V     S   Y ++F D+ +R+ WV+ +
Sbjct: 640 KSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPL 699

Query: 198 KQKSEKII--KLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQLTCLN 257
             + E+ I          +KN+   R+  ++ D   EY +    ++     I    T   
Sbjct: 700 HDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTA 759

Query: 258 TSQQNGVAERKNRHLADICCSMSHASNVP 275
            S+ +GVAER NR L + C ++ H S +P
Sbjct: 760 DSRAHGVAERLNRTLLNDCRTLLHCSGLP 788

[Close]

BLAST of Cmc06g0158041 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-11
Identity = 53/209 (25.36%), Postives = 95/209 (45.45%), Query Frame = 0


Query: 78  INKTQK-NETAY-LWHARLGHVSYSKLKTIINKFMLKGLPQLDIR----EDMVCVGFQYG 137
           +NK++  N+  Y L H  LGH ++  ++  + K  +  L + DI         C     G
Sbjct: 580 VNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIG 639

Query: 138 KA----HQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSRYVWVFFM 197
           K+    H    +     + +P + +H+D+FG V     S   Y ++F D+ +R+ WV+ +
Sbjct: 640 KSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPL 699

Query: 198 KQKSEKII--KLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQLTCLN 257
             + E+ I          +KN+   R+  ++ D   EY +    ++     I    T   
Sbjct: 700 HDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTA 759

Query: 258 TSQQNGVAERKNRHLADICCSMSHASNVP 275
            S+ +GVAER NR L + C ++ H S +P
Sbjct: 760 DSRAHGVAERLNRTLLNDCRTLLHCSGLP 788

[Close]

BLAST of Cmc06g0158041 vs. ExPASy TrEMBL
Match: A0A2N9HXV3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44817 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.6e-104
Identity = 184/277 (66.43%), Postives = 231/277 (83.39%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+NSNQV L +V++V  MKKNL+SV+QLT + ++++FG  +VKVY +LK+S TP+M
Sbjct: 391 IVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSGHYVLFGPQDVKVYRDLKISETPIM 450

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EG+R++S+YVMSAE+ Y+++T+KNET  LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 451 EGQRLESVYVMSAESAYVDRTRKNETTDLWHMRLGHVSYSKLSIMVKKSMLKGLPQLDVR 510

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+K+SKF+AK+PLELVHSDVFG VKQ SI GMRYMVTFIDDFSR
Sbjct: 511 TDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSR 570

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F+E V+ E+GK+I CLR+DN GEY S+EFSQYL++ +I HQ
Sbjct: 571 YVWVFFMKEKSDTFSKFKEFRESVEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQ 630

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNG+AERKNRHLA++C SM HA NVP RF
Sbjct: 631 YTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGRF 667

[Close]

BLAST of Cmc06g0158041 vs. ExPASy TrEMBL
Match: A0A2N9EJM7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2884 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.6e-104
Identity = 184/277 (66.43%), Postives = 230/277 (83.03%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+NSNQV L +V++V  MKKNL+SV+QLT + ++++FG  +VKVY +LK+S TP+M
Sbjct: 350 IVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSGHYVLFGPQDVKVYRDLKISETPIM 409

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EG+R++S+YVMSAE+ Y++KT+KNET  LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 410 EGQRLESVYVMSAESAYVDKTRKNETTDLWHMRLGHVSYSKLSVMVKKSMLKGLPQLDVR 469

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+K+SKF+AK+PLELVHSDVFG VKQ SI GMRYMVTFIDDFSR
Sbjct: 470 TDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSR 529

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F+E  + E+GK+I CLR+DN GEY S+EFSQYL++ +I HQ
Sbjct: 530 YVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQ 589

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNG+AERKNRHLA++C SM HA NVP RF
Sbjct: 590 YTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGRF 626

[Close]

BLAST of Cmc06g0158041 vs. ExPASy TrEMBL
Match: A0A2N9HMH0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43238 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 2.1e-104
Identity = 184/277 (66.43%), Postives = 230/277 (83.03%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+NSNQV L +V++V  MKKNL+SV+QLT + ++++FG  +VKVY +LK+S TP+M
Sbjct: 307 IVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSGHYVLFGPQDVKVYRDLKISETPIM 366

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EG+R++S+YVMSAE+ Y++KT+KNET  LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 367 EGQRLESVYVMSAESAYVDKTRKNETTDLWHMRLGHVSYSKLSIMVKKSMLKGLPQLDVR 426

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+K+SKF+AK+PLELVHSDVFG VKQ SI GMRYMVTFIDDFSR
Sbjct: 427 TDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSR 486

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F+E  + E+GK+I CLR+DN GEY S+EFSQYL++ +I HQ
Sbjct: 487 YVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQ 546

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNG+AERKNRHLA++C SM HA NVP RF
Sbjct: 547 YTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGRF 583

[Close]

BLAST of Cmc06g0158041 vs. ExPASy TrEMBL
Match: A0A2N9GKM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27872 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.7e-104
Identity = 184/277 (66.43%), Postives = 230/277 (83.03%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+NSNQV L +V++V  MKKNL+SV+QLT + ++++FG  +VKVY +LK+S TP+M
Sbjct: 372 IVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSGHYVLFGPQDVKVYRDLKISETPIM 431

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EG+R++S+YVMSAE+ Y++KT+KNET  LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 432 EGQRLESVYVMSAESAYVDKTRKNETTDLWHMRLGHVSYSKLSIMVKKSMLKGLPQLDVR 491

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+K+SKF+AK+PLELVHSDVFG VKQ SI GMRYMVTFIDDFSR
Sbjct: 492 TDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSR 551

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F+E  + E+GK+I CLR+DN GEY S+EFSQYL++ +I HQ
Sbjct: 552 YVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECQIRHQ 611

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNG+AERKNRHLA++C SM HA NVP RF
Sbjct: 612 YTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGRF 648

[Close]

BLAST of Cmc06g0158041 vs. ExPASy TrEMBL
Match: A0A2N9F162 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12619 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.6e-104
Identity = 183/277 (66.06%), Postives = 230/277 (83.03%), Query Frame = 0


Query: 1   MTVPRFNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 60
           +  PR+NSNQV L +V++V  MKKNL+SV+QLT + ++++FG  +VKVY +LK+S TP+M
Sbjct: 372 IVTPRYNSNQVPLQDVYHVPGMKKNLLSVAQLTLSGHYVLFGPQDVKVYRDLKISETPIM 431

Query: 61  EGRRMDSIYVMSAETTYINKTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGLPQLDIR 120
           EG+R++S+YVMSAE+ Y+++T+KNET  LWH RLGHVSYSKL  ++ K MLKGLPQLD+R
Sbjct: 432 EGQRLESVYVMSAESAYVDRTRKNETTDLWHMRLGHVSYSKLSVMVKKSMLKGLPQLDVR 491

Query: 121 EDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFGLVKQSSISGMRYMVTFIDDFSR 180
            D VC G QYGKAHQ P+K+SKF+AK+PLELVHSDVFG VKQ SI GMRYMVTFIDDFSR
Sbjct: 492 TDTVCAGCQYGKAHQLPYKESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSR 551

Query: 181 YVWVFFMKQKSEKIIKLKKFKEQVKNELGKRIQCLRSDNRGEYISNEFSQYLQKYKICHQ 240
           YVWVFFMK+KS+   K K+F+E  + E+GK+I CLR+DN GEY S+EFSQYL++ +I HQ
Sbjct: 552 YVWVFFMKEKSDTFSKFKEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQ 611

Query: 241 LTCLNTSQQNGVAERKNRHLADICCSMSHASNVPRRF 278
            TC NT QQNG+AERKNRHLA++C SM HA NVP RF
Sbjct: 612 YTCANTPQQNGIAERKNRHLAEVCRSMLHAKNVPGRF 648

[Close]

BLAST of Cmc06g0158041 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 62.0 bits (149), Expect = 8.7e-10
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 59  LMEGRRMDSIYVM--SAETTYIN--KTQKNETAYLWHARLGHVSYSKLKTIINKFMLKGL 118
           +++G R DS+Y++  S ET   N  +T K+ET  LWH+RL H+S   ++ ++ K  L   
Sbjct: 38  ILKGNRHDSLYILQGSVETGESNLAETAKDETR-LWHSRLAHMSQRGMELLVKKGFLDSS 97

Query: 119 PQLDIREDMVCVGFQYGKAHQPPFKQSKFRAKQPLELVHSDVFG 159
               ++    C+   YGK H+  F   +   K PL+ VHSD++G
Sbjct: 98  KVSSLKFCEDCI---YGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137

The following BLAST results are available for this feature:

BLAST of Cmc06g0158041 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8669333.1	9.7e-104	65.70	hypothetical protein F3Y22_tig00112249pilonHSYRG00290 [Hibiscus syriacus]	[more]
KAE8705435.1	2.2e-103	66.43	hypothetical protein F3Y22_tig00110429pilonHSYRG01243 [Hibiscus syriacus]	[more]
KAE8687058.1	2.2e-103	66.43	hypothetical protein F3Y22_tig00111024pilonHSYRG00006 [Hibiscus syriacus]	[more]
KAE8715296.1	2.2e-103	66.43	hypothetical protein F3Y22_tig00110183pilonHSYRG00102 [Hibiscus syriacus]	[more]
KAE8662552.1	2.8e-103	66.43	hypothetical protein F3Y22_tig00113302pilonHSYRG00055 [Hibiscus syriacus]	[more]

BLAST of Cmc06g0158041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.7e-31	32.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.4e-28	31.54	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-27	30.32	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	2.6e-11	25.36	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	2.6e-11	25.36	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc06g0158041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HXV3	1.6e-104	66.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44817 PE=4 SV=1	[more]
A0A2N9EJM7	1.6e-104	66.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2884 PE=4 SV=1	[more]
A0A2N9HMH0	2.1e-104	66.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43238 PE=4 SV=1	[more]
A0A2N9GKM9	2.7e-104	66.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27872 PE=4 SV=1	[more]
A0A2N9F162	3.6e-104	66.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12619 PE=4 SV=1	[more]

BLAST of Cmc06g0158041 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	8.7e-10	34.62	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 146..243 e-value: 4.0E-11 score: 43.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 144..277 score: 18.63014
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 140..277 e-value: 2.4E-31 score: 110.5
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 81..133 e-value: 5.0E-12 score: 45.5
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 77..251
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 77..251
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 143..272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0158041.1	Cmc06g0158041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding