Cmc05g0136031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0136031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr05: 18852569 .. 18853231 (-)
RNA-Seq Expression	Cmc05g0136031
Synteny	Cmc05g0136031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAAAGTGTTTGTATCGACAAATGCTACTTTCTTGAAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGGATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCGTCAAGATTTGATGAAACCACCACATCAGGTCAGTCTCATCCTTCTCAACCATTGAGAATGCCTCGATGCAGTGGGATGATTGTATCGCAATCTAACCGTTACTTGGGTTTAACTAAAACTCAAGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATTAATGATGTAGATAAGGATCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTATTTCAATTCAGTGTGGGAGCTTGTAGATCTGCCTGAAGGGGTAAAACCTATAGGGTGTAAGTCGATCTATAAGAGAAAGAGAGATTCAACTGGGAAGGTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGAATATACGCAAAGGGAAGGGGTTGACTATGAAGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATCGTCACATTTTATGATTATGAAATATGGCAAATGGATGTCTAG

mRNA sequence

ATGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAAAGTGTTTGTATCGACAAATGCTACTTTCTTGAAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGGATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCGTCAAGATTTGATGAAACCACCACATCAGGTCAGTCTCATCCTTCTCAACCATTGAGAATGCCTCGATGCAGTGGGATGATTGTATCGCAATCTAACCGTTACTTGGGTTTAACTAAAACTCAAGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATTAATGATGTAGATAAGGATCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTATTTCAATTCAGTGTGGGAGCTTGTAGATCTGCCTGAAGGGGTAAAACCTATAGGGTGTAAGTCGATCTATAAGAGAAAGAGAGATTCAACTGGGAAGGTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGAATATACGCAAAGGGAAGGGGTTGACTATGAAGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATCGTCACATTTTATGATTATGAAATATGGCAAATGGATGTCTAG

Coding sequence (CDS)

ATGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAAAGTGTTTGTATCGACAAATGCTACTTTCTTGAAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGGATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCGTCAAGATTTGATGAAACCACCACATCAGGTCAGTCTCATCCTTCTCAACCATTGAGAATGCCTCGATGCAGTGGGATGATTGTATCGCAATCTAACCGTTACTTGGGTTTAACTAAAACTCAAGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATTAATGATGTAGATAAGGATCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTATTTCAATTCAGTGTGGGAGCTTGTAGATCTGCCTGAAGGGGTAAAACCTATAGGGTGTAAGTCGATCTATAAGAGAAAGAGAGATTCAACTGGGAAGGTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGAATATACGCAAAGGGAAGGGGTTGACTATGAAGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATCGTCACATTTTATGATTATGAAATATGGCAAATGGATGTCTAG

Protein sequence

MRGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDETTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYTQREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV

Homology

[Close]

BLAST of Cmc05g0136031 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.2e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 217 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 276

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 277 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 336

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 337 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 396

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 397 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 435

[Close]

BLAST of Cmc05g0136031 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.2e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 607 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 666

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 667 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 726

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 727 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 786

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 787 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 825

[Close]

BLAST of Cmc05g0136031 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.2e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 481 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 540

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 541 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 600

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 601 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 660

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 661 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 699

[Close]

BLAST of Cmc05g0136031 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.2e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 481 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 540

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 541 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 600

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 601 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 660

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 661 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 699

[Close]

BLAST of Cmc05g0136031 vs. NCBI nr
Match: KAA0048178.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.4 bits (1043), Expect = 1.6e-109
Identity = 202/219 (92.24%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVS+NATFL++DHMRDHKPRSKLVLNEATD STRVVDEVGPSSR DE
Sbjct: 248 RGGLFFDPQENRVFVSSNATFLEDDHMRDHKPRSKLVLNEATDESTRVVDEVGPSSRVDE 307

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG IVSQ NRYLGLTKTQVVIPDDGVEDPLSYK A+NDVDKD
Sbjct: 308 TTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTKTQVVIPDDGVEDPLSYKSAMNDVDKD 367

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQT KARLVAK YT
Sbjct: 368 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTLKARLVAKGYT 427

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 428 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 466

[Close]

BLAST of Cmc05g0136031 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-22
Identity = 63/160 (39.38%), Postives = 98/160 (61.25%), Query Frame = 0


Query: 61  ETTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDK 120
           E  T G+    QPLR      +   +S RY   +   V+I DD   +P S K+ ++  +K
Sbjct: 772 EHPTQGEEQ-HQPLRRSERPRV---ESRRY--PSTEYVLISDD--REPESLKEVLSHPEK 831

Query: 121 DQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEY 180
           +Q +KAM  EMES+  N  ++LV+LP+G +P+ CK ++K K+D   K+  +KARLV K +
Sbjct: 832 NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 891

Query: 181 TQREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
            Q++G+D++E FSPV  + SIR +LS+    D E+ Q+DV
Sbjct: 892 EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDV 923

[Close]

BLAST of Cmc05g0136031 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.4e-17
Identity = 62/181 (34.25%), Postives = 87/181 (48.07%), Query Frame = 0


Query: 55   PSSRFDETTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGL-TKTQVVIPDDGVEDP---LS 114
            PS+   E  +   S  S P   P      + Q N    + T +      DG+  P    S
Sbjct: 869  PSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYS 928

Query: 115  Y----------KQAINDVDKDQWVKAMDLEMESMYFNSVWELV-DLPEGVKPIGCKSIYK 174
            Y          + AI  +  D+W +AM  E+ +   N  W+LV   P  V  +GC+ I+ 
Sbjct: 929  YATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFT 988

Query: 175  RKRDSTGKVQTFKARLVAKEYTQREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMD 221
            +K +S G +  +KARLVAK Y QR G+DY ETFSPV    SIRI+L +     + I Q+D
Sbjct: 989  KKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLD 1048

[Close]

BLAST of Cmc05g0136031 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.2e-16
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 112  KQAINDVDKDQWVKAMDLEMESMYFNSVWELVDLPEG-VKPIGCKSIYKRKRDSTGKVQT 171
            + AI  +  ++W  AM  E+ +   N  W+LV  P   V  +GC+ I+ +K +S G +  
Sbjct: 957  RTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNR 1016

Query: 172  FKARLVAKEYTQREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
            +KARLVAK Y QR G+DY ETFSPV    SIRI+L +     + I Q+DV
Sbjct: 1017 YKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1066

[Close]

BLAST of Cmc05g0136031 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 9.1e-15
Identity = 57/213 (26.76%), Postives = 102/213 (47.89%), Query Frame = 0


Query: 10   QENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGST-RVVDEVGPSSRFDETTTSGQS 69
            + NK F++ +    ++DH+ + K       NE+ +  T   + E+G  +          +
Sbjct: 798  ESNKYFLNESKKRKRDDHLNESKGSGN--PNESRESETAEHLKEIGIDNPTKNDGIEIIN 857

Query: 70   HPSQPLR-MPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKDQWVKAM 129
              S+ L+  P+ S      S   + L    +        D + Y+      DK  W +A+
Sbjct: 858  RRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRD-----DKSSWEEAI 917

Query: 130  DLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYTQREGVD 189
            + E+ +   N+ W +   PE    +  + ++  K +  G    +KARLVA+ +TQ+  +D
Sbjct: 918  NTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQID 977

Query: 190  YEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
            YEETF+PVA + S R +LS+V  Y+ ++ QMDV
Sbjct: 978  YEETFAPVARISSFRFILSLVIQYNLKVHQMDV 1003

[Close]

BLAST of Cmc05g0136031 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 123 WVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYTQ 182
           W +AM  E++++  N  W LV  P     +GCK ++K K  S G +   KARLVAK + Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 183 REGVDYEETFSPVAMLKSIRILLSI 208
            EG+ + ET+SPV    +IR +L++
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNV 124

[Close]

BLAST of Cmc05g0136031 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 607 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 666

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 667 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 726

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 727 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 786

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 787 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 825

[Close]

BLAST of Cmc05g0136031 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 481 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 540

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 541 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 600

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 601 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 660

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 661 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 699

[Close]

BLAST of Cmc05g0136031 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 217 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 276

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 277 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 336

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 337 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 396

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 397 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 435

[Close]

BLAST of Cmc05g0136031 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110
Identity = 202/219 (92.24%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVSTNATFL+EDHMR+HKPRSKLVL+EATD STRVVDEVGPSSR DE
Sbjct: 481 RGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDE 540

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG +VSQ NRYLGLT+TQVVIPDDGVEDPLSYKQA+NDVDKD
Sbjct: 541 TTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKD 600

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQTFKARLVAK YT
Sbjct: 601 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT 660

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 661 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 699

[Close]

BLAST of Cmc05g0136031 vs. ExPASy TrEMBL
Match: A0A5A7TYX5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00800 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.7e-110
Identity = 202/219 (92.24%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 2   RGGLFFDPQENKVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGPSSRFDE 61
           RGGLFFDPQEN+VFVS+NATFL++DHMRDHKPRSKLVLNEATD STRVVDEVGPSSR DE
Sbjct: 248 RGGLFFDPQENRVFVSSNATFLEDDHMRDHKPRSKLVLNEATDESTRVVDEVGPSSRVDE 307

Query: 62  TTTSGQSHPSQPLRMPRCSGMIVSQSNRYLGLTKTQVVIPDDGVEDPLSYKQAINDVDKD 121
           TTTSGQSHPSQ LRMPR SG IVSQ NRYLGLTKTQVVIPDDGVEDPLSYK A+NDVDKD
Sbjct: 308 TTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTKTQVVIPDDGVEDPLSYKSAMNDVDKD 367

Query: 122 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYT 181
           QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCK IYKRKRDS GKVQT KARLVAK YT
Sbjct: 368 QWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTLKARLVAKGYT 427

Query: 182 QREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           QREGVDYEETFSPVAMLKSIRILLSI TFYDYEIWQMDV
Sbjct: 428 QREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDV 466

[Close]

BLAST of Cmc05g0136031 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 50/115 (43.48%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 106 EDPLSYKQAINDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDST 165
           ++P +Y +A   +    W  AMD E+ +M     WE+  LP   KPIGCK +YK K +S 
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 166 GKVQTFKARLVAKEYTQREGVDYEETFSPVAMLKSIRILLSIVTFYDYEIWQMDV 221
           G ++ +KARLVAK YTQ+EG+D+ ETFSPV  L S++++L+I   Y++ + Q+D+
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDI 195

[Close]

BLAST of Cmc05g0136031 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 123 WVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKSIYKRKRDSTGKVQTFKARLVAKEYTQ 182
           W +AM  E++++  N  W LV  P     +GCK ++K K  S G +   KARLVAK + Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 183 REGVDYEETFSPVAMLKSIRILLSI 208
            EG+ + ET+SPV    +IR +L++
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of Cmc05g0136031 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15984.1	7.2e-110	92.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	7.2e-110	92.24	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	7.2e-110	92.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	7.2e-110	92.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048178.1	1.6e-109	92.24	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0136031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-22	39.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	7.4e-17	34.25	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.2e-16	41.82	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	9.1e-15	26.76	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.6e-11	40.00	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0136031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	3.5e-110	92.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	3.5e-110	92.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5D3CYF4	3.5e-110	92.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	3.5e-110	92.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TYX5	7.7e-110	92.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00800...	[more]

BLAST of Cmc05g0136031 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-22	43.48	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.1e-12	40.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 137..220 e-value: 1.5E-22 score: 80.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..74
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 106..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0136031.1	Cmc05g0136031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding