Cmc05g0129161 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0129161
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy1-copia retrotransposon protein
LocationCMiso1.1chr05: 6865250 .. 6866023 (+)
RNA-Seq ExpressionCmc05g0129161
SyntenyCmc05g0129161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTTCATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGCCGAGCTCAAAATTGTACTAGAAGGTGACAAAGTTGTCCTTACCAAAAATGGAGATTTTTTCTGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACGATTTCCATGAATGCAAATGCTTCTAGTTCTGCTTACTTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCCATAAAAAGCCTTTCAAACCAGTTGAATATAGAACTACTAATCTGTTAGAAATAATTCACTCAGATCTAGCCGACTTTAAAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATTCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTTTTAGTATGTTTTTAAAATTCAAGGCAGAATCTGAGAATCAATTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGAGGTGGTGAATATTCTGATAAAACTCTTAAAGAATTTTGTGAATCAAATTGTATCATCCATGAATTTACTGCTCCTTACTCACCATAA

mRNA sequence

ATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTTCATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGCCGAGCTCAAAATTGTACTAGAAGGTGACAAAGTTGTCCTTACCAAAAATGGAGATTTTTTCTGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACGATTTCCATGAATGCAAATGCTTCTAGTTCTGCTTACTTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCCATAAAAAGCCTTTCAAACCAGTTGAATATAGAACTACTAATCTGTTAGAAATAATTCACTCAGATCTAGCCGACTTTAAAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATTCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTTTTAGTATGTTTTTAAAATTCAAGGCAGAATCTGAGAATCAATTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGAGGTGGTGAATATTCTGATAAAACTCTTAAAGAATTTTGTGAATCAAATTGTATCATCCATGAATTTACTGCTCCTTACTCACCATAA

Coding sequence (CDS)

ATGGGAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTTTAAGTAATGTTTCATATGTCCCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGGGCCGAGCTCAAAATTGTACTAGAAGGTGACAAAGTTGTCCTTACCAAAAATGGAGATTTTTTCTGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACGATTTCCATGAATGCAAATGCTTCTAGTTCTGCTTACTTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCCATAAAAAGCCTTTCAAACCAGTTGAATATAGAACTACTAATCTGTTAGAAATAATTCACTCAGATCTAGCCGACTTTAAAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATTCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTTTTAGTATGTTTTTAAAATTCAAGGCAGAATCTGAGAATCAATTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGAGGTGGTGAATATTCTGATAAAACTCTTAAAGAATTTTGTGAATCAAATTGTATCATCCATGAATTTACTGCTCCTTACTCACCATAA

Protein sequence

MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKVVLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNYYVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKEFCESNCIIHEFTAPYSP
Homology
BLAST of Cmc05g0129161 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 476.9 bits (1226), Expect = 1.1e-130
Identity = 240/257 (93.39%), Postives = 248/257 (96.50%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKCPIC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCPICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 606 FCESNGIIHEFTAPYSP 622

BLAST of Cmc05g0129161 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 475.3 bits (1222), Expect = 3.3e-130
Identity = 240/257 (93.39%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 303 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 362

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 363 VLTKNGDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 422

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 423 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 482

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLIKTKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 483 YVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 542

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 543 FCESNGIIHEFTAPYSP 559

BLAST of Cmc05g0129161 vs. NCBI nr
Match: TYK27931.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 9.5e-130
Identity = 239/257 (93.00%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 606 FCESNGIIHEFTAPYSP 622

BLAST of Cmc05g0129161 vs. NCBI nr
Match: TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 9.5e-130
Identity = 239/257 (93.00%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 367 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 426

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 427 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 486

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 487 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 546

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 547 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 606

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 607 FCESNGIIHEFTAPYSP 623

BLAST of Cmc05g0129161 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 9.5e-130
Identity = 239/257 (93.00%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 606 FCESNGIIHEFTAPYSP 622

BLAST of Cmc05g0129161 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.2e-39
Identity = 91/257 (35.41%), Postives = 141/257 (54.86%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGN++ + + G G + +K   G TL L +V +VP LR NL+SG  L+R   +      K 
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
            LTK      KG     L+  N        +++   I S +LWH R+GH++   ++ L  
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEI-SVDLWHKRMGHMSEKGLQILAK 443

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
             LI+ ++      C  C+  K H+  F+    R  N+L++++SD+       S GG  Y
Sbjct: 444 KSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKY 503

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           +V F+DD SR   +Y++KTK++ F +F KF A  E + G+K+KRLRSD GGEY+ +  +E
Sbjct: 504 FVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEE 563

Query: 241 FCESNCIIHEFTAPYSP 258
           +C S+ I HE T P +P
Sbjct: 564 YCSSHGIRHEKTVPGTP 579

BLAST of Cmc05g0129161 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 75/251 (29.88%), Postives = 122/251 (48.61%), Query Frame = 0

Query: 16  ILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKVVLTKNGDFFCKGY-L 75
           I++L +   ++L +V +      NL+S   L  A + I  +   V ++KNG    K   +
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM 393

Query: 76  SNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLK------DLRLINTSE 135
            N + V+N  + + NA        +  LWH R GH++   + ++K      D  L+N  E
Sbjct: 394 LNNVPVINFQAYSINAKHK----NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 136 SHETGKCPICVESKFHKKPFKPVEYRT--TNLLEIIHSDLADFKTTTSRGGKNYYVFFVD 195
                 C  C+  K  + PFK ++ +T     L ++HSD+    T  +   KNY+V FVD
Sbjct: 454 L-SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVD 513

Query: 196 DYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKEFCESNC 255
            ++ +   YLIK K++ FSMF  F A+SE     K+  L  D G EY    +++FC    
Sbjct: 514 QFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKG 573

Query: 256 IIHEFTAPYSP 258
           I +  T P++P
Sbjct: 574 ISYHLTVPHTP 579

BLAST of Cmc05g0129161 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-19
Identity = 74/247 (29.96%), Postives = 121/247 (48.99%), Query Frame = 0

Query: 20  TSGKTLSLSNVSYVPSLRRNLVSGSLL---NRAELKIVLEGDKVVLTKNGDFFCKGYLSN 79
           TS ++L L+ V YVP++ +NL+S   L   NR  ++      +V     G    +G   +
Sbjct: 359 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 418

Query: 80  GLF-----VLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRK-LKDLRLINTSESH 139
            L+         +SM A+  S A    + + WH RLGH + A +   + +  L   + SH
Sbjct: 419 ELYEWPIASSQAVSMFASPCSKA----THSSWHSRLGHPSLAILNSVISNHSLPVLNPSH 478

Query: 140 ETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNYYVFFVDDYSR 199
           +   C  C  +K HK PF      ++  LE I+SD+       S     YYV FVD ++R
Sbjct: 479 KLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTR 538

Query: 200 FTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKEFCESNCIIHE 258
           +T +Y +K K++    F+ FK+  EN+   +I  L SD GGE+    L+++   + I H 
Sbjct: 539 YTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHF 598

BLAST of Cmc05g0129161 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-17
Identity = 71/247 (28.74%), Postives = 117/247 (47.37%), Query Frame = 0

Query: 20  TSGKTLSLSNVSYVPSLRRNLVSGSLL---NRAELKIVLEGDKVVLTKNGDFFCKGYLSN 79
           T  + L+L N+ YVP++ +NL+S   L   N   ++      +V     G    +G   +
Sbjct: 380 TKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439

Query: 80  GLF-----VLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRK-LKDLRLINTSESH 139
            L+         +S+ A+ SS A    + + WH RLGH   + +   + +  L   + SH
Sbjct: 440 ELYEWPIASSQPVSLFASPSSKA----THSSWHARLGHPAPSILNSVISNYSLSVLNPSH 499

Query: 140 ETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNYYVFFVDDYSR 199
           +   C  C+ +K +K PF      +T  LE I+SD+       S     YYV FVD ++R
Sbjct: 500 KFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTR 559

Query: 200 FTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKEFCESNCIIHE 258
           +T +Y +K K++    F+ FK   EN+   +I    SD GGE+    L E+   + I H 
Sbjct: 560 YTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHL 619

BLAST of Cmc05g0129161 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.6e-09
Identity = 66/240 (27.50%), Postives = 104/240 (43.33%), Query Frame = 0

Query: 20  TSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKVVL---TKNGDFF--CKGYL 79
           TS K L   N++Y       L + ++        +   D  VL    K+GDF+   K YL
Sbjct: 508 TSIKALHTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYL 567

Query: 80  SNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRK-LKDLRLINTSESH--- 139
                   TI+ N N S S        L H  LGH NF SI+K LK   +    ES    
Sbjct: 568 IPSHISKLTIN-NVNKSKSVNKYPYP-LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEW 627

Query: 140 ---ETGKCPICVESKF----HKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNYYVF 199
               T +CP C+  K     H K  +     +    + +H+D+        +   +Y++ 
Sbjct: 628 SNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFIS 687

Query: 200 FVDDYSRFTKIYLIKTKNE--AFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKEF 242
           F D+ +RF  +Y +  + E    ++F    A  +NQ   ++  ++ DRG EY++KTL +F
Sbjct: 688 FTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKF 745

BLAST of Cmc05g0129161 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.5e-131
Identity = 240/257 (93.39%), Postives = 248/257 (96.50%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKCPIC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCPICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 606 FCESNGIIHEFTAPYSP 622

BLAST of Cmc05g0129161 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.6e-130
Identity = 240/257 (93.39%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 303 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 362

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 363 VLTKNGDFIGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 422

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 423 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 482

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLIKTKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 483 YVSFVDDYSRFTKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 542

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 543 FCESNGIIHEFTAPYSP 559

BLAST of Cmc05g0129161 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.6e-130
Identity = 239/257 (93.00%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 367 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 426

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 427 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 486

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 487 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 546

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 547 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 606

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 607 FCESNGIIHEFTAPYSP 623

BLAST of Cmc05g0129161 vs. ExPASy TrEMBL
Match: A0A5D3DWC4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001190 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.6e-130
Identity = 239/257 (93.00%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 606 FCESNGIIHEFTAPYSP 622

BLAST of Cmc05g0129161 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.6e-130
Identity = 239/257 (93.00%), Postives = 247/257 (96.11%), Query Frame = 0

Query: 1   MGNSATAGVIGKGKVILKLTSGKTLSLSNVSYVPSLRRNLVSGSLLNRAELKIVLEGDKV 60
           MGNSATAGVIGKGKVILKLTSGKTLSLSNV YVPSLRRNLVSGSLLNRA LKIVLEGDKV
Sbjct: 366 MGNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 425

Query: 61  VLTKNGDFFCKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 120
           VLTKNGDF  KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD
Sbjct: 426 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 485

Query: 121 LRLINTSESHETGKCPICVESKFHKKPFKPVEYRTTNLLEIIHSDLADFKTTTSRGGKNY 180
           +RLINTSE+HETGKC IC+ESKFHKKPFKPVEYRTT LLE+IHSDLADF+TT SRGGKNY
Sbjct: 486 MRLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELLELIHSDLADFRTTASRGGKNY 545

Query: 181 YVFFVDDYSRFTKIYLIKTKNEAFSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 240
           YV FVDDYSRFTKIYLI+TKNEA SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKTLKE
Sbjct: 546 YVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 605

Query: 241 FCESNCIIHEFTAPYSP 258
           FCESN IIHEFTAPYSP
Sbjct: 606 FCESNGIIHEFTAPYSP 622

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK04394.11.1e-13093.39ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK11299.13.3e-13093.39ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK27931.19.5e-13093.00ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05597.19.5e-13093.00ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036643.19.5e-13093.00ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109786.2e-3935.41Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.2e-2329.88Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT941.9e-1929.96Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW23.9e-1728.74Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q124916.6e-0927.50Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5D3BZI15.5e-13193.39Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CM581.6e-13093.39Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C1A64.6e-13093.00Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DWC44.6e-13093.00Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T1664.6e-13093.00Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 151..257
e-value: 2.4E-19
score: 71.5
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 77..142
e-value: 3.9E-12
score: 45.9
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 160..257
e-value: 7.2E-13
score: 48.7
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 146..257
score: 15.436827
NoneNo IPR availablePANTHERPTHR11439:SF324RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 99..254
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 99..254
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 154..257

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0129161.1Cmc05g0129161.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding