Cmc04g0105161 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0105161
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	structure-specific endonuclease subunit slx1
Location	CMiso1.1chr04: 23364670 .. 23368036 (+)
RNA-Seq Expression	Cmc04g0105161
Synteny	Cmc04g0105161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAATAGAAGAGAATGGATGTTGGTTGCAAATTCAATAGAGATGGAAGTCTTATCCATACATACAAGATGATGCAAACTTGCAATTACAAGTGAACTTTAAAGAGAATTTAAGGTGAGGTTTATACTTTATTTAAACAATGGACAAGAATTTGACGATGAAAATAACAAAGCGATGTTAATTTTCTTTTTTAGAAGAACTGGGAGTTTCGAACCCGCGCCGAAGAAGAGAAACCAAAGAAAGAATTATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATCGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGGTAACTCCAATTTCTTCTCTTCTGTTCCTTGTTCCAACAACAGATTCCATGATTTGAGGTTGAAAAGTTATCTGTGTCATCTTCGATTAGCCTTAAAAAGCTGATAGCCTCTAGTGAATTTCATTGGCATACAAATTGGCACTTTGCAACTTTTAGATGTCCTTTATGCATAAAAGCTATACAAATATTTCTTCATGTCATAAAGTTGGGCTCTTGTACAGTTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTAGAATCATGCTGCAATTTGGGCTCTAATTTCAAGTGCATTGCTTGGTTTTTCGTGATTGTTGTCATTCTAGACATTATGTTGCCTTGGGCTTTTGCAAACTTGAGTTGTCTCCTAGTTTCTAGGTTGTGGCAGTGATCTTGCTAAGTAAGATAGATGACAATTCATGATGGATATGTGCCAAGTGCGATAGTATTGGGTACTAGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGACTTGGGATTTCATTTCATGCTCCAAAAGACACAGGGAATAGAAGAAACTTTAGTTAACCTAAAATTTTAATTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAGTATAAGATGATTCAAGGTTGAAGACACTACTCTTGTTAGTTGACAAGAAAGTGCTGCAAAACCCTGTGCCAGAATACCGAAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGGAAATAGGCAAATACATAGAATGCAGCGTTTAAATTGTTTTGTACTCTTAACTGGCCCCCTTAAACAGCATTGGCAACAGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTGACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGCTTGATTGGGCCATCGTCATATAAATCCATGGAAATGGTCTCCCATATTGGGTAAAAGTGCATCAATATAGCTGCAAAAGGAGAGACAATGGTAACAAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTAGGAGAGGAGATGGGAGGAGCTCCACTTCGCCCAAGGAGTTTGTAGGCTTCCTAACTAAAACCCATCAATTTTGTGTCATATTAAATCGTTGCACTATGAGTCCTAGGAGCTGACAACTCCACTCCTTATCCGAAACACCCCTTTCGTAAGTGAGTGTGAAGCATAAGAGAGTCGGGAAGGAGTGACTTGGCATTAATCGAGAACTGTATTGGTTAGGATGGATGTAACTAGTTAGTTAGACCAGCATGAGCGGTGTGACTTGCGTAGTATTTAGAAGTGAGATCAGGCCAGAGATAGGGAACTCTTGGATTCTCCCTTAGCTACACATTATTTAATATGAAACAGTTTCTATCATATAATTTTTTCTTCCCATAAGGTAGAGATCTAGAAACAAGCTCATGAACTTTCATTAATGTCTACCAAAAGGGCACAAATAAAGGCAATAGTAAACACAGATGATCAGATAATAGTTGAATTTTTTTTCCTGTTTGGGAAAGGAACTGATACATTTTGCAGGTGAAATGGTCAAGAACAGTTTCAGGGCTCCATAATTCATGCCCTAAGTTTGTGTAATGAACCAACTATGATATTTCTGATTTCCACTGCTGAGACAACTGCATGCATTAAATACTGCTGATTGGATTGACTTATTTATGCAAAGAAACAAACGTATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTGGTAATCATCAGTTCTCAAATTATATGCATGTTAAGACTCATACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTTAACATCTTTTTCCTTTAGAAATGAAACAAGTTGCAATTTTTTAATCACCATGTGTGGTATCCCATTTATCATTCGCATGGCATTGGAAGGGAAGTAGTTGGGGGTGTACTTACTTCTGTCAAGGGAAATGAAGCACCTGGGAGATTTCTAGTACTCCCCTAGTATTATACTTCCTTTGTTCATACTATAAATTGGTCTTCATAAATGTTAGTAGATCCGACCCTACTTTTAAAAAGCGTGTTGTTGTGATACACAATAAATGGAGGGAGTTTTTCGTAGTCTCATAGTAAAGAAAATTATCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAAGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTTGTATCTATTGATCGTATGTTATGTGACTTAATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATGAACATTCTTCAAATTTCATTAAGACAATGATTTCATTTTGAAACCTTATATTAAGTTTTTCTTTGGTTCATCAACTTGACACCGAATTTCTCGTGTTTTTCAACCGAGAAATGTTCTGTAAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCCTTTATATGCAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCATATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGATTCTTTATATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTCTATAAGATAAATATCT

mRNA sequence

TCAAATAGAAGAGAATGGATGTTGGTTGCAAATTCAATAGAGATGGAAGTCTTATCCATACATACAAGATGATGCAAACTTGCAATTACAAGTGAACTTTAAAGAGAATTTAAGAACTGGGAGTTTCGAACCCGCGCCGAAGAAGAGAAACCAAAGAAAGAATTATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATCGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTAGAATCATGCTGCAATTTGGGCTCTAATTTCAAGTGCATTGCTTGGTTTTTCGTGATTGTTGTCATTCTAGACATTATGTTGCCTTGGGCTTTTGCAAACTTGAGTTGTCTCCTAGTTTCTAGGTTGTGGCAGTGATCTTGCTAAGTAAGATAGATGACAATTCATGATGGATATGTGCCAAGTGCGATAGTATTGGGTACTAGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGACTTGGGATTTCATTTCATGCTCCAAAAGACACAGGGAATAGAAGAAACTTTAGTTAACCTAAAATTTTAATTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAGTATAAGATGATTCAAGGTTGAAGACACTACTCTTGTTAGTTGACAAGAAAGTGCTGCAAAACCCTGTGCCAGAATACCGAAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGGAAATAGGCAAATACATAGAATGCAGCGTTTAAATTGTTTTGTACTCTTAACTGGCCCCCTTAAACAGCATTGGCAACAGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTGACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGCTTGATTGGGCCATCGTCATATAAATCCATGGAAATGGTCTCCCATATTGGGTAAAAGTGCATCAATATAGCTGCAAAAGGAGAGACAATGGTAACAAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTAGGAGAGGAGATGGGAGGAGCTCCACTTCGCCCAAGGAGTTTGTAGGCTTCCTAACTAAAACCCATCAATTTTGTGTCATATTAAATCGTTGCACTATGAGTCCTAGGAGCTGACAACTCCACTCCTTATCCGAAACACCCCTTTCGTAAGTGAGTGTGAAGCATAAGAGAGTCGGGAAGGAGTGACTTGGCATTAATCGAGAACTGTATTGGTTAGGATGGATGTAACTAGTTAGTTAGACCAGCATGAGCGGTGTGACTTGCGTAGTATTTAGAAGTGAGATCAGGCCAGAGATAGGGAACTCTTGGATTCTCCCTTAGCTACACATTATTTAATATGAAACAGTTTCTATCATATAATTTTTTCTTCCCATAAGGTAGAGATCTAGAAACAAGCTCATGAACTTTCATTAATGTCTACCAAAAGGGCACAAATAAAGGCAATAGTAAACACAGATGATCAGATAATAGTTGAATTTTTTTTCCTGTTTGGGAAAGGAACTGATACATTTTGCAGGTGAAATGGTCAAGAACAGTTTCAGGGCTCCATAATTCATGCCCTAAGTTTGTGTAATGAACCAACTATGATATTTCTGATTTCCACTGCTGAGACAACTGCATGCATTAAATACTGCTGATTGGATTGACTTATTTATGCAAAGAAACAAACGTATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTGGTAATCATCAGTTCTCAAATTATATGCATGTTAAGACTCATACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTTAACATCTTTTTCCTTTAGAAATGAAACAAGTTGCAATTTTTTAATCACCATGTGTGGTATCCCATTTATCATTCGCATGGCATTGGAAGGGAAGTAGTTGGGGGTGTACTTACTTCTGTCAAGGGAAATGAAGCACCTGGGAGATTTCTAGTACTCCCCTAGTATTATACTTCCTTTGTTCATACTATAAATTGGTCTTCATAAATGTTAGTAGATCCGACCCTACTTTTAAAAAGCGTGTTGTTGTGATACACAATAAATGGAGGGAGTTTTTCGTAGTCTCATAGTAAAGAAAATTATCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAAGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTTGTATCTATTGATCGTATGTTATGTGACTTAATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATGAACATTCTTCAAATTTCATTAAGACAATGATTTCATTTTGAAACCTTATATTAAGTTTTTCTTTGGTTCATCAACTTGACACCGAATTTCTCGTGTTTTTCAACCGAGAAATGTTCTGTAAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCCTTTATATGCAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCATATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGATTCTTTATATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTCTATAAGATAAATATCT

Coding sequence (CDS)

ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATCGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTAGAATCATGCTGCAATTTGGGCTCTAATTTCAAGTGCATTGCTTGGTTTTTCGTGATTGTTGTCATTCTAGACATTATGTTGCCTTGGGCTTTTGCAAACTTGAGTTGTCTCCTAGTTTCTAGGTTGTGGCAGTGA

Protein sequence

MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQLNYILLESCCNLGSNFKCIAWFFVIVVILDIMLPWAFANLSCLLVSRLWQ

Homology

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BLAST of Cmc04g0105161 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-53
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVK EEPKPKQWCVYLIISSNSPIKTY
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQ 109
           VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQ  +
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACE 108

[Close]

BLAST of Cmc04g0105161 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 4.0e-46
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSE-EPKPKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVKSE +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQ 109
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQ  +
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACE 109

[Close]

BLAST of Cmc04g0105161 vs. NCBI nr
Match: XP_038903986.1 (structure-specific endonuclease subunit slx1 isoform X3 [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-44
Identity = 94/109 (86.24%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QKP  SN +L KSSSSSTK P LIVKS EPKPKQWCVYLIISSNSPIKTY
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDPILIVKS-EPKPKQWCVYLIISSNSPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQL 110
           VGVTLDFDRRLKQHNGEIKGGAKAT+ GRPW+CACTIHGFKDQ QG  L
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRTGRPWLCACTIHGFKDQGQGFFL 108

[Close]

BLAST of Cmc04g0105161 vs. NCBI nr
Match: XP_038903985.1 (structure-specific endonuclease subunit slx1 isoform X2 [Benincasa hispida])

HSP 1 Score: 189.1 bits (479), Expect = 2.9e-44
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QKP  SN +L KSSSSSTK P LIVKS EPKPKQWCVYLIISSNSPIKTY
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDPILIVKS-EPKPKQWCVYLIISSNSPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQG 107
           VGVTLDFDRRLKQHNGEIKGGAKAT+ GRPW+CACTIHGFKDQ QG
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRTGRPWLCACTIHGFKDQGQG 105

[Close]

BLAST of Cmc04g0105161 vs. NCBI nr
Match: KAG7018060.1 (slx1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 6.4e-44
Identity = 94/117 (80.34%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVKS EP+PK+WCVYLIISSN PIKTY
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKS-EPEPKKWCVYLIISSNPPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQLNYILLESC 118
           VGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQSQ  +      E C
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEIC 116

[Close]

BLAST of Cmc04g0105161 vs. ExPASy Swiss-Prot
Match: B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-12
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 45  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ 104
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 105 SQGIQLNYI 113
              +Q  ++
Sbjct: 63  IAALQFEWV 71

[Close]

BLAST of Cmc04g0105161 vs. ExPASy Swiss-Prot
Match: Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-10
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 45  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKD 104
           +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 105 QSQGIQLNY 112
           +   ++  +
Sbjct: 67  KVSALKFEW 75

[Close]

BLAST of Cmc04g0105161 vs. ExPASy Swiss-Prot
Match: B6QFH5 (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=slx1 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 37  SEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICA 96
           S +P P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T+    RPW   
Sbjct: 11  SPKPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMI 70

Query: 97  CTIHGFKDQSQGIQLNY 112
             I GF  ++  +Q  +
Sbjct: 71  TIIEGFTSRTGALQFEW 87

[Close]

BLAST of Cmc04g0105161 vs. ExPASy Swiss-Prot
Match: B8MDD1 (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=slx1 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 39  EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICACT 98
           +P P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T+    RPW     
Sbjct: 13  KPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEMVAI 72

Query: 99  IHGFKDQSQGIQLNY 112
           + GF  ++  +Q  +
Sbjct: 73  VEGFPSRTGALQFEW 87

[Close]

BLAST of Cmc04g0105161 vs. ExPASy Swiss-Prot
Match: B9WGW9 (Structure-specific endonuclease subunit SLX1 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) OX=573826 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 42  PKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIK-GGAKATQ--AGRPWICACTIH 101
           P  + VY++ S   P +TY+G T D  RRL+QHNG++K GGA  T+    RPW     +H
Sbjct: 14  PSFYGVYILKSIPKPRRTYIGSTPDPKRRLRQHNGDLKVGGAYRTKKDGSRPWTMVVLVH 73

Query: 102 GFKDQSQGIQLNYIL 114
           GF  +   +Q  + L
Sbjct: 74  GFPSRIAALQFEHSL 88

[Close]

BLAST of Cmc04g0105161 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVK EEPKPKQWCVYLIISSNSPIKTY
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQ 109
           VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQ  +
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACE 108

[Close]

BLAST of Cmc04g0105161 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.9e-46
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSE-EPKPKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVKSE +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQ 109
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQ  +
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACE 109

[Close]

BLAST of Cmc04g0105161 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.1e-44
Identity = 94/117 (80.34%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVKS EP+PK+WCVYLIISSN PIKTY
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKS-EPEPKKWCVYLIISSNPPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQLNYILLESC 118
           VGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQSQ  +      E C
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEIC 116

[Close]

BLAST of Cmc04g0105161 vs. ExPASy TrEMBL
Match: A0A6J1J559 (structure-specific endonuclease subunit slx1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.9e-42
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTL +KS EP+ K+WCVYLIISSN PIKTY
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKS-EPETKKWCVYLIISSNPPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQG 107
           VGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFK+QSQG
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQG 105

[Close]

BLAST of Cmc04g0105161 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.0e-42
Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKSEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTL +KS EP+ K+WCVYLIISSN PIKTY
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKS-EPETKKWCVYLIISSNPPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQLNYILLESC 118
           VGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFK+QSQ  +      E C
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQACEFESKWKEIC 116

[Close]

BLAST of Cmc04g0105161 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-26
Identity = 62/112 (55.36%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 2   RLLSQTFRCQKPPISNPRLP-----KSSSSSTKGPTLIVKSEE---PKPKQWCVYLIISS 61
           RLLS+TF   K   SNP+ P     K+S +    P+     E    PK K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQ 106
             PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF   SQ
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQ 114

[Close]

BLAST of Cmc04g0105161 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 22/54 (40.74%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 58  KTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQGIQLNY 112
           +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF      +Q  +
Sbjct: 43  QTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEW 96

The following BLAST results are available for this feature:

BLAST of Cmc04g0105161 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461838.1	2.6e-53	96.30	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846...	[more]
XP_004151512.1	4.0e-46	88.07	structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot...	[more]
XP_038903986.1	2.2e-44	86.24	structure-specific endonuclease subunit slx1 isoform X3 [Benincasa hispida]	[more]
XP_038903985.1	2.9e-44	87.74	structure-specific endonuclease subunit slx1 isoform X2 [Benincasa hispida]	[more]
KAG7018060.1	6.4e-44	80.34	slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cmc04g0105161 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6JY16	3.0e-12	44.93	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
Q9P7M3	4.8e-10	42.03	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
B6QFH5	1.8e-09	41.56	Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT...	[more]
B8MDD1	1.8e-09	40.00	Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A...	[more]
B9WGW9	2.0e-08	40.00	Structure-specific endonuclease subunit SLX1 OS=Candida dubliniensis (strain CD3...	[more]

BLAST of Cmc04g0105161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFH5	1.3e-53	96.30	structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A0A0LCZ9	1.9e-46	88.07	GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=...	[more]
A0A6J1F1V2	3.1e-44	80.34	structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J559	2.9e-42	83.96	structure-specific endonuclease subunit slx1 isoform X2 OS=Cucurbita maxima OX=3...	[more]
A0A6J1J5C9	5.0e-42	76.92	structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3...	[more]

BLAST of Cmc04g0105161 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43210.1	1.7e-26	55.36	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.2	3.0e-07	40.74	Excinuclease ABC, C subunit, N-terminal	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG endonuclease	PFAM	PF01541	GIY-YIG	coord: 44..109 e-value: 9.5E-11 score: 41.8
IPR000305	GIY-YIG endonuclease	PROSITE	PS50164	GIY_YIG	coord: 43..128 score: 12.798452
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	3.40.1440.10		coord: 39..115 e-value: 2.9E-17 score: 64.5
IPR035901	GIY-YIG endonuclease superfamily	SUPERFAMILY	82771	GIY-YIG endonuclease	coord: 44..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..33
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 17..110
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 17..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0105161.1	Cmc04g0105161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0008821	crossover junction endodeoxyribonuclease activity