Cmc04g0094211 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094211
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 6713967 .. 6715214 (-)
RNA-Seq Expression	Cmc04g0094211
Synteny	Cmc04g0094211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTCATGAACAGGGTGTATAAGGATTTCTTAGACATGTTTGTTATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCTGAGGATAAGGAGCATTTGCACCGAGTTTTGAAGACTCTTCGAGCCAATAAGCTATATGCCAAGTTCCCTAAGTGTGAGTTCTGGCTGAAGAAGGTGACCTTCCTCAGCAACGTGGTTTCCAGTGAGGGGGTTTCTGTGGACCCAGCAAAGACCGAAGCGGTTACTAGTTTGCCTCGACCGTCTACAGTTAGCGAGATTCATAGTTTCCTGGGTTTGACAGGTTAGTACAGGAGGTTTGTGGAAGACTTCTCTCGTATGGCCAGTACCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCTAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGTAGAAGCTTGTGTCTACACCAATCCTGACAATGCTAGATGGATCGAGGAGCTTTATGATCTACAGTGATGCTTCCAAGAAAGGACTGGGTTGTGTGCTGATGCAGCAGGGCAGGGTAGTTGCTTACGCCTCTCGTCAGTTGAAGAGTCACGAGCAGAACTATCCTACCCATGACCTAATGTTGACAGCAGTGGTTTTTGCACTGAAGATATTGAGACATTACCTGTACGTTGAGAAGATACAAATTTTCACTGACCATACGAGCCTAAAGTACTTCTTCACCCAGAAGGAGCTGAACATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATGATGACTGCAAGATTCTGTACCACCCGGGTAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGATTGCACATTCAGCTGCGCTTATCACGAAGCAGGCCCCCTTACTCAGAGATTTTGAGAGAGCCGGGATTGTAGTCTCAGTAGGGGACGTTACCTCACAGTTGGCTTGGTTGTCAATACAGCCGACCTTGAGACAGAGGATTATTGTCCCTCAGCTAAAGGATCCTTATCTGGTCGAGAAGCGTCATTTGGTAGAGACAGGACGAGGTGAGGATTTCTCCATATCCTCTGACGACGGCCTTACGTTTGAGGGACGTTTGTGTGTGCCGGAAGACAGTGCAGTCAAGGCAGAGCTTTTGACTGAGGCTCATAGTTCTCCATTCACTATGCACCCTAGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTAG

mRNA sequence

ATGTCGTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTCATGAACAGGGTGTATAAGGATTTCTTAGACATGTTTGTTATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCTGAGGATAAGGAGCATTTGCACCGAGTTTTGAAGACTCTTCGAGCCAATAAGCTATATGCCAAGTTCCCTAAGTGTGAGTTCTGGCTGAAGAAGGTGACCTTCCTCAGCAACGTGGTTTCCAGTGAGGGGGTTTCTGTGGACCCAGCAAAGACCGAAGCGGTTACTAGTTTGCCTCGACCGTCTACAGTTAGCGAGATTCATAGTTTCCTGGGTTTGACAGATGGATCGAGGAGCTTTATGATCTACAGTGATGCTTCCAAGAAAGGACTGGGTTGTGTGCTGATGCAGCAGGGCAGGGTAGTTGCTTACGCCTCTCGTCAGTTGAAGAGTCACGAGCAGAACTATCCTACCCATGACCTAATGTTGACAGCAGTGGTTTTTGCACTGAAGATATTGAGACATTACCTGTACGTTGAGAAGATACAAATTTTCACTGACCATACGAGCCTAAAGTACTTCTTCACCCAGAAGGAGCTGAACATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATGATGACTGCAAGATTCTGTACCACCCGGGTAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGATTGCACATTCAGCTGCGCTTATCACGAAGCAGGCCCCCTTACTCAGAGATTTTGAGAGAGCCGGGATTGTAGTCTCAGTAGGGGACGTTACCTCACAGTTGGCTTGGTTGTCAATACAGCCGACCTTGAGACAGAGGATTATTGTCCCTCAGCTAAAGGATCCTTATCTGGTCGAGAAGCGTCATTTGGTAGAGACAGGACGAGGTGAGGATTTCTCCATATCCTCTGACGACGGCCTTACGTTTGAGGGACGTTTGTGTGTGCCGGAAGACAGTGCAGTCAAGGCAGAGCTTTTGACTGAGGCTCATAGTTCTCCATTCACTATGCACCCTAGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTAG

Coding sequence (CDS)

ATGTCGTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTCATGAACAGGGTGTATAAGGATTTCTTAGACATGTTTGTTATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGCTGAGGATAAGGAGCATTTGCACCGAGTTTTGAAGACTCTTCGAGCCAATAAGCTATATGCCAAGTTCCCTAAGTGTGAGTTCTGGCTGAAGAAGGTGACCTTCCTCAGCAACGTGGTTTCCAGTGAGGGGGTTTCTGTGGACCCAGCAAAGACCGAAGCGGTTACTAGTTTGCCTCGACCGTCTACAGTTAGCGAGATTCATAGTTTCCTGGGTTTGACAGATGGATCGAGGAGCTTTATGATCTACAGTGATGCTTCCAAGAAAGGACTGGGTTGTGTGCTGATGCAGCAGGGCAGGGTAGTTGCTTACGCCTCTCGTCAGTTGAAGAGTCACGAGCAGAACTATCCTACCCATGACCTAATGTTGACAGCAGTGGTTTTTGCACTGAAGATATTGAGACATTACCTGTACGTTGAGAAGATACAAATTTTCACTGACCATACGAGCCTAAAGTACTTCTTCACCCAGAAGGAGCTGAACATGAGACAGAGAAGATGGCTTGAGTTGGTGAAGGATGATGACTGCAAGATTCTGTACCACCCGGGTAAGGCAAATGTAGTAGCTGATGCGTTGAGCAGGAAGATTGCACATTCAGCTGCGCTTATCACGAAGCAGGCCCCCTTACTCAGAGATTTTGAGAGAGCCGGGATTGTAGTCTCAGTAGGGGACGTTACCTCACAGTTGGCTTGGTTGTCAATACAGCCGACCTTGAGACAGAGGATTATTGTCCCTCAGCTAAAGGATCCTTATCTGGTCGAGAAGCGTCATTTGGTAGAGACAGGACGAGGTGAGGATTTCTCCATATCCTCTGACGACGGCCTTACGTTTGAGGGACGTTTGTGTGTGCCGGAAGACAGTGCAGTCAAGGCAGAGCTTTTGACTGAGGCTCATAGTTCTCCATTCACTATGCACCCTAGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTATTGGTAG

Protein sequence

MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANKLYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLTDGSRSFMIYSDASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIFTDHTSLKYFFTQKELNMRQRRWLELVKDDDCKILYHPGKANVVADALSRKIAHSAALITKQAPLLRDFERAGIVVSVGDVTSQLAWLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGEDFSISSDDGLTFEGRLCVPEDSAVKAELLTEAHSSPFTMHPRSTKMYQDLRCVYW

Homology

[Close]

BLAST of Cmc04g0094211 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 602.4 bits (1552), Expect = 2.5e-168
Identity = 316/415 (76.14%), Postives = 334/415 (80.48%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
            MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VL+TLRANK
Sbjct: 673  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61   LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
            LYAKF KCEFWL+KVTFL +VVSSEGVSVDPAK EAVT+ PRPSTVSEI SFLGL     
Sbjct: 733  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121  -------------------------------------------------DGSRSFMIYSD 180
                                                             DGS SF+IYSD
Sbjct: 793  RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181  ASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIF 240
            ASKKGLGCVLMQQG+VVAYASRQLKSHEQNYPTHDL L AVVFALKI RHYLY EKIQIF
Sbjct: 853  ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241  TDHTSLKYFFTQKELNMRQRRWLELVKDDDCKILYHPGKANVVADALSRKIAHSAALITK 300
            TDH SLKYFFTQKELNMRQRRWLELVKD DC+ILYHPGK NVVADAL+RK+AHSAALITK
Sbjct: 913  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKENVVADALNRKVAHSAALITK 972

Query: 301  QAPLLRDFERAGIVVSVGDVTSQLAWLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGE 360
            Q PLLRDFERAGIV+S G+VTSQLA LS+QPTLRQ+IIV QL DPYLVEKR +VETG+G 
Sbjct: 973  QTPLLRDFERAGIVISAGEVTSQLAQLSVQPTLRQKIIVDQLNDPYLVEKRRMVETGQGG 1032

Query: 361  DFSISSDDGLTFEGRLCVPEDSAVKAELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            DFSISSDDGL FEGRLCVPEDSAVK ELLTEAHSSPFTMHP STKMYQDLR VYW
Sbjct: 1033 DFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYW 1087

[Close]

BLAST of Cmc04g0094211 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 602.4 bits (1552), Expect = 2.5e-168
Identity = 316/415 (76.14%), Postives = 334/415 (80.48%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
            MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VL+TLRANK
Sbjct: 673  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61   LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
            LYAKF KCEFWL+KVTFL +VVSSEGVSVDPAK EAVT+ PRPSTVSEI SFLGL     
Sbjct: 733  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121  -------------------------------------------------DGSRSFMIYSD 180
                                                             DGS SF+IYSD
Sbjct: 793  RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181  ASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIF 240
            ASKKGLGCVLMQQG+VVAYASRQLKSHEQNYPTHDL L AVVFALKI RHYLY EKIQIF
Sbjct: 853  ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241  TDHTSLKYFFTQKELNMRQRRWLELVKDDDCKILYHPGKANVVADALSRKIAHSAALITK 300
            TDH SLKYFFTQKELNMRQRRWLELVKD DC+ILYHPGK NVVADAL+RK+AHSAALITK
Sbjct: 913  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKENVVADALNRKVAHSAALITK 972

Query: 301  QAPLLRDFERAGIVVSVGDVTSQLAWLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGE 360
            Q PLLRDFERAGIV+S G+VTSQLA LS+QPTLRQ+IIV QL DPYLVEKR +VETG+G 
Sbjct: 973  QTPLLRDFERAGIVISAGEVTSQLAQLSVQPTLRQKIIVDQLNDPYLVEKRRMVETGQGG 1032

Query: 361  DFSISSDDGLTFEGRLCVPEDSAVKAELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            DFSISSDDGL FEGRLCVPEDSAVK ELLTEAHSSPFTMHP STKMYQDLR VYW
Sbjct: 1033 DFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYW 1087

[Close]

BLAST of Cmc04g0094211 vs. NCBI nr
Match: KAA0032248.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 601.3 bits (1549), Expect = 5.6e-168
Identity = 312/390 (80.00%), Postives = 332/390 (85.13%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           MSFGLTNAPAVFMD MN+V+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VLKTLRANK
Sbjct: 522 MSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLKTLRANK 581

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
           LYAKF KCEFWL+KVTFL +VVSSEGVSVDPAK EAVT+ PRPSTVSEI SFLGL     
Sbjct: 582 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 641

Query: 121 ------------------------DGSRSFMIYSDASKKGLGCVLMQQGRVVAYASRQLK 180
                                   DGS +F+IYSDASKKGLGCVLMQQG+VVAYASRQLK
Sbjct: 642 SPACESSFQELKQKLVTASVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 701

Query: 181 SHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIFTDHTSLKYFFTQKELNMRQRRWLEL 240
            HEQNYPTHDL L AVVFALKI RHYLY EKIQI+TDH SLKYFFTQKELNMRQRRWLEL
Sbjct: 702 VHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 761

Query: 241 VKDDDCKILYHPGKANVVADALSRKIAHSAALITKQAPLLRDFERAGIVVSVGDVTSQLA 300
           VKD DC+ILYHPGKANVVADALSRK+AHSAALITKQ PLLRDFERA I VSVG+VTSQLA
Sbjct: 762 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTSQLA 821

Query: 301 WLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGEDFSISSDDGLTFEGRLCVPEDSAVK 360
            LS+QPTLRQ+IIV QL DPYLV KR +VETG+GEDFSISSDDGL FEGRLCV EDSAV+
Sbjct: 822 QLSVQPTLRQKIIVAQLNDPYLVGKRRMVETGQGEDFSISSDDGLMFEGRLCVLEDSAVR 881

Query: 361 AELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            ELLTEAHSSPFTMHP STKMYQ+LR VYW
Sbjct: 882 TELLTEAHSSPFTMHPGSTKMYQNLRSVYW 911

[Close]

BLAST of Cmc04g0094211 vs. NCBI nr
Match: KAA0066451.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 595.1 bits (1533), Expect = 4.0e-166
Identity = 305/368 (82.88%), Postives = 326/368 (88.59%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VL+TLRANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLTDGSR 120
           LYAKF KCEFW++KVTFL +VVSSEGVSVDPAK EA+T+ PRPS VSEI SFLGL    R
Sbjct: 311 LYAKFSKCEFWVRKVTFLGHVVSSEGVSVDPAKIEAMTNWPRPSIVSEIRSFLGLAGYYR 370

Query: 121 S------FMIYSDASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKI 180
           S      F+IYSDAS+KGLGCVLMQQG+VVAYA RQLKSHEQNYPTHDL L AVVFALKI
Sbjct: 371 STRWVGKFVIYSDASRKGLGCVLMQQGKVVAYAFRQLKSHEQNYPTHDLELAAVVFALKI 430

Query: 181 LRHYLYVEKIQIFTDHTSLKYFFTQKELNMRQRRWLELVKDDDCKILYHPGKANVVADAL 240
            RHYLY EKIQI+TDH S KYFFTQKELNMRQRRWLELVKD DC+ILYHPGKANVVAD L
Sbjct: 431 WRHYLYGEKIQIYTDHKSPKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADVL 490

Query: 241 SRKIAHSAALITKQAPLLRDFERAGIVVSVGDVTSQLAWLSIQPTLRQRIIVPQLKDPYL 300
           SRK+AHSAALITKQ PLL DFER  I VSVG+VTSQLA LS+QPTLRQ IIV QL DPYL
Sbjct: 491 SRKVAHSAALITKQTPLLGDFERVEIAVSVGEVTSQLAQLSVQPTLRQNIIVSQLNDPYL 550

Query: 301 VEKRHLVETGRGEDFSISSDDGLTFEGRLCVPEDSAVKAELLTEAHSSPFTMHPRSTKMY 360
           VEKR +VETG+GE+FSISS+DGL FEGRLCVPEDSAVK ELLTEAHSSPFTMHP STKMY
Sbjct: 551 VEKRRMVETGQGENFSISSNDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPWSTKMY 610

Query: 361 QDLRCVYW 363
           QDLR VYW
Sbjct: 611 QDLRSVYW 618

[Close]

BLAST of Cmc04g0094211 vs. NCBI nr
Match: KAA0042241.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 595.1 bits (1533), Expect = 4.0e-166
Identity = 310/390 (79.49%), Postives = 329/390 (84.36%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTE E +EHLH+VL+TLRANK
Sbjct: 171 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTETEHEEHLHQVLETLRANK 230

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
           LYAKF KCEFWLKKVTFL +VVSSE VS+DPAK EAVT+ PR STVSEI SFLGL     
Sbjct: 231 LYAKFSKCEFWLKKVTFLGHVVSSEEVSMDPAKIEAVTNWPRTSTVSEIRSFLGLAGYYR 290

Query: 121 ------------------------DGSRSFMIYSDASKKGLGCVLMQQGRVVAYASRQLK 180
                                   DGS+SF+IYSDASKKGLGCVLMQQG+VV YASRQLK
Sbjct: 291 SPACESSFQELKQKRVTAPVLTVPDGSKSFVIYSDASKKGLGCVLMQQGKVVTYASRQLK 350

Query: 181 SHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIFTDHTSLKYFFTQKELNMRQRRWLEL 240
           SHEQNYPTHDL L AVVFALKI RHYLY EKIQI+TDH SLK+FFT KELNMRQRRWLEL
Sbjct: 351 SHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKFFFTHKELNMRQRRWLEL 410

Query: 241 VKDDDCKILYHPGKANVVADALSRKIAHSAALITKQAPLLRDFERAGIVVSVGDVTSQLA 300
           VKD DC+ILYHPGKANVVADAL+RK+AHSA LITKQAPLLRDFERA I VSVG+VTSQLA
Sbjct: 411 VKDYDCEILYHPGKANVVADALNRKVAHSATLITKQAPLLRDFERAEIAVSVGEVTSQLA 470

Query: 301 WLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGEDFSISSDDGLTFEGRLCVPEDSAVK 360
            LS+QPTLRQRIIV QL DPYLV KR LVETG+GEDFSISSDDGL F+G LCVPEDSAVK
Sbjct: 471 QLSVQPTLRQRIIVAQLNDPYLVVKRCLVETGQGEDFSISSDDGLMFKGCLCVPEDSAVK 530

Query: 361 AELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            ELLTEAHSSPFTMHP STKMYQDLR VYW
Sbjct: 531 TELLTEAHSSPFTMHPGSTKMYQDLRSVYW 560

[Close]

BLAST of Cmc04g0094211 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.4e-34
Identity = 94/290 (32.41%), Postives = 135/290 (46.55%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           M FGL NAPA F   MN + +  L+   +V++DDI+++S +  E  + L  V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
           L  +  KCEF  ++ TFL +V++ +G+  +P K EA+   P P+   EI +FLGLT    
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 --------------------------------------------------DGSRSFMIYS 180
                                                             D ++ F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQI 237
           DAS   LG VL Q G  ++Y SR L  HE NY T +  L A+V+A K  RHYL     +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

[Close]

BLAST of Cmc04g0094211 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-32
Identity = 92/290 (31.72%), Postives = 131/290 (45.17%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           M FGL NAPA F   MN + +  L+   +V++DDI+I+S +  E    +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
           L  +  KCEF  K+  FL ++V+ +G+  +P K +A+ S P P+   EI +FLGLT    
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 --------------------------------------------------DGSRSFMIYS 180
                                                             D  + F++ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQI 237
           DAS   LG VL Q G  +++ SR L  HE NY   +  L A+V+A K  RHYL   +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

[Close]

BLAST of Cmc04g0094211 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.6e-32
Identity = 89/303 (29.37%), Postives = 138/303 (45.54%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           + FGL NA ++F   ++ V ++ +     V++DD++I+S+ E++   H+  VLK L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
           +     K  F+ + V +L  +VS +G   DP K +A+   P P  V ++ SFLGL     
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 -DGSRSFMIYSDASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKIL 238
            D  + F + +DAS  G+G VL Q+GR +   SR LK  EQNY T++  L A+V+AL  L
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKL 548

[Close]

BLAST of Cmc04g0094211 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-30
Identity = 86/305 (28.20%), Postives = 143/305 (46.89%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           + FGL NAPA+F   ++ + ++ +     V+IDDI+++S+      ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLTDGSR 120
           L     K  F   +V FL  +V+++G+  DP K  A++ +P P++V E+  FLG+T   R
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 SFM--------------------------------------------------------- 180
            F+                                                         
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 -------IYSDASKKGLGCVLMQ----QGRVVAYASRQLKSHEQNYPTHDLMLTAVVFAL 237
                  + +DAS   +G VL Q    + R +AY SR L   E+NY T +  + A++++L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

[Close]

BLAST of Cmc04g0094211 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-25
Identity = 88/295 (29.83%), Postives = 133/295 (45.08%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
            M FGL NAP+ F  +M   ++D    FV V++DDILI+S++  E  +HL  VL+ L+   
Sbjct: 744  MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 803

Query: 61   LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLTDGSR 120
            L  K  KC+F  ++  FL   +  + ++    K  A+   P P TV +   FLG+ +  R
Sbjct: 804  LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 863

Query: 121  SFM---------------------------------------------------IYSDAS 180
             F+                                                   + +DAS
Sbjct: 864  RFIPNCSKIAQPIQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDAS 923

Query: 181  KKGLGCVLMQQGR------VVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEK 239
            K G+G VL +         VV Y S+ L+S ++NYP  +L L  ++ AL   R+ L+ + 
Sbjct: 924  KDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKH 983

[Close]

BLAST of Cmc04g0094211 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 1.2e-168
Identity = 316/415 (76.14%), Postives = 334/415 (80.48%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
            MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VL+TLRANK
Sbjct: 673  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61   LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
            LYAKF KCEFWL+KVTFL +VVSSEGVSVDPAK EAVT+ PRPSTVSEI SFLGL     
Sbjct: 733  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121  -------------------------------------------------DGSRSFMIYSD 180
                                                             DGS SF+IYSD
Sbjct: 793  RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181  ASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIF 240
            ASKKGLGCVLMQQG+VVAYASRQLKSHEQNYPTHDL L AVVFALKI RHYLY EKIQIF
Sbjct: 853  ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241  TDHTSLKYFFTQKELNMRQRRWLELVKDDDCKILYHPGKANVVADALSRKIAHSAALITK 300
            TDH SLKYFFTQKELNMRQRRWLELVKD DC+ILYHPGK NVVADAL+RK+AHSAALITK
Sbjct: 913  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKENVVADALNRKVAHSAALITK 972

Query: 301  QAPLLRDFERAGIVVSVGDVTSQLAWLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGE 360
            Q PLLRDFERAGIV+S G+VTSQLA LS+QPTLRQ+IIV QL DPYLVEKR +VETG+G 
Sbjct: 973  QTPLLRDFERAGIVISAGEVTSQLAQLSVQPTLRQKIIVDQLNDPYLVEKRRMVETGQGG 1032

Query: 361  DFSISSDDGLTFEGRLCVPEDSAVKAELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            DFSISSDDGL FEGRLCVPEDSAVK ELLTEAHSSPFTMHP STKMYQDLR VYW
Sbjct: 1033 DFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYW 1087

[Close]

BLAST of Cmc04g0094211 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 1.2e-168
Identity = 316/415 (76.14%), Postives = 334/415 (80.48%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
            MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VL+TLRANK
Sbjct: 673  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61   LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
            LYAKF KCEFWL+KVTFL +VVSSEGVSVDPAK EAVT+ PRPSTVSEI SFLGL     
Sbjct: 733  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121  -------------------------------------------------DGSRSFMIYSD 180
                                                             DGS SF+IYSD
Sbjct: 793  RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181  ASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIF 240
            ASKKGLGCVLMQQG+VVAYASRQLKSHEQNYPTHDL L AVVFALKI RHYLY EKIQIF
Sbjct: 853  ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241  TDHTSLKYFFTQKELNMRQRRWLELVKDDDCKILYHPGKANVVADALSRKIAHSAALITK 300
            TDH SLKYFFTQKELNMRQRRWLELVKD DC+ILYHPGK NVVADAL+RK+AHSAALITK
Sbjct: 913  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKENVVADALNRKVAHSAALITK 972

Query: 301  QAPLLRDFERAGIVVSVGDVTSQLAWLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGE 360
            Q PLLRDFERAGIV+S G+VTSQLA LS+QPTLRQ+IIV QL DPYLVEKR +VETG+G 
Sbjct: 973  QTPLLRDFERAGIVISAGEVTSQLAQLSVQPTLRQKIIVDQLNDPYLVEKRRMVETGQGG 1032

Query: 361  DFSISSDDGLTFEGRLCVPEDSAVKAELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            DFSISSDDGL FEGRLCVPEDSAVK ELLTEAHSSPFTMHP STKMYQDLR VYW
Sbjct: 1033 DFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYW 1087

[Close]

BLAST of Cmc04g0094211 vs. ExPASy TrEMBL
Match: A0A5A7SNR3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00790 PE=4 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 2.7e-168
Identity = 312/390 (80.00%), Postives = 332/390 (85.13%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           MSFGLTNAPAVFMD MN+V+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VLKTLRANK
Sbjct: 522 MSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLKTLRANK 581

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
           LYAKF KCEFWL+KVTFL +VVSSEGVSVDPAK EAVT+ PRPSTVSEI SFLGL     
Sbjct: 582 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 641

Query: 121 ------------------------DGSRSFMIYSDASKKGLGCVLMQQGRVVAYASRQLK 180
                                   DGS +F+IYSDASKKGLGCVLMQQG+VVAYASRQLK
Sbjct: 642 SPACESSFQELKQKLVTASVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 701

Query: 181 SHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIFTDHTSLKYFFTQKELNMRQRRWLEL 240
            HEQNYPTHDL L AVVFALKI RHYLY EKIQI+TDH SLKYFFTQKELNMRQRRWLEL
Sbjct: 702 VHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 761

Query: 241 VKDDDCKILYHPGKANVVADALSRKIAHSAALITKQAPLLRDFERAGIVVSVGDVTSQLA 300
           VKD DC+ILYHPGKANVVADALSRK+AHSAALITKQ PLLRDFERA I VSVG+VTSQLA
Sbjct: 762 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTSQLA 821

Query: 301 WLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGEDFSISSDDGLTFEGRLCVPEDSAVK 360
            LS+QPTLRQ+IIV QL DPYLV KR +VETG+GEDFSISSDDGL FEGRLCV EDSAV+
Sbjct: 822 QLSVQPTLRQKIIVAQLNDPYLVGKRRMVETGQGEDFSISSDDGLMFEGRLCVLEDSAVR 881

Query: 361 AELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            ELLTEAHSSPFTMHP STKMYQ+LR VYW
Sbjct: 882 TELLTEAHSSPFTMHPGSTKMYQNLRSVYW 911

[Close]

BLAST of Cmc04g0094211 vs. ExPASy TrEMBL
Match: A0A5A7VLF2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005490 PE=4 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 1.9e-166
Identity = 305/368 (82.88%), Postives = 326/368 (88.59%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTEAE +EHLH+VL+TLRANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLTDGSR 120
           LYAKF KCEFW++KVTFL +VVSSEGVSVDPAK EA+T+ PRPS VSEI SFLGL    R
Sbjct: 311 LYAKFSKCEFWVRKVTFLGHVVSSEGVSVDPAKIEAMTNWPRPSIVSEIRSFLGLAGYYR 370

Query: 121 S------FMIYSDASKKGLGCVLMQQGRVVAYASRQLKSHEQNYPTHDLMLTAVVFALKI 180
           S      F+IYSDAS+KGLGCVLMQQG+VVAYA RQLKSHEQNYPTHDL L AVVFALKI
Sbjct: 371 STRWVGKFVIYSDASRKGLGCVLMQQGKVVAYAFRQLKSHEQNYPTHDLELAAVVFALKI 430

Query: 181 LRHYLYVEKIQIFTDHTSLKYFFTQKELNMRQRRWLELVKDDDCKILYHPGKANVVADAL 240
            RHYLY EKIQI+TDH S KYFFTQKELNMRQRRWLELVKD DC+ILYHPGKANVVAD L
Sbjct: 431 WRHYLYGEKIQIYTDHKSPKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADVL 490

Query: 241 SRKIAHSAALITKQAPLLRDFERAGIVVSVGDVTSQLAWLSIQPTLRQRIIVPQLKDPYL 300
           SRK+AHSAALITKQ PLL DFER  I VSVG+VTSQLA LS+QPTLRQ IIV QL DPYL
Sbjct: 491 SRKVAHSAALITKQTPLLGDFERVEIAVSVGEVTSQLAQLSVQPTLRQNIIVSQLNDPYL 550

Query: 301 VEKRHLVETGRGEDFSISSDDGLTFEGRLCVPEDSAVKAELLTEAHSSPFTMHPRSTKMY 360
           VEKR +VETG+GE+FSISS+DGL FEGRLCVPEDSAVK ELLTEAHSSPFTMHP STKMY
Sbjct: 551 VEKRRMVETGQGENFSISSNDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPWSTKMY 610

Query: 361 QDLRCVYW 363
           QDLR VYW
Sbjct: 611 QDLRSVYW 618

[Close]

BLAST of Cmc04g0094211 vs. ExPASy TrEMBL
Match: A0A5A7TKY8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00170 PE=4 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 1.9e-166
Identity = 310/390 (79.49%), Postives = 329/390 (84.36%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDFMNRVYKDFLDMFVIVFIDDILIYSKTEAEDKEHLHRVLKTLRANK 60
           MSFGLTNAPAVFMD MNRV+KDFLD FVIVFIDDILIYSKTE E +EHLH+VL+TLRANK
Sbjct: 171 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTETEHEEHLHQVLETLRANK 230

Query: 61  LYAKFPKCEFWLKKVTFLSNVVSSEGVSVDPAKTEAVTSLPRPSTVSEIHSFLGLT---- 120
           LYAKF KCEFWLKKVTFL +VVSSE VS+DPAK EAVT+ PR STVSEI SFLGL     
Sbjct: 231 LYAKFSKCEFWLKKVTFLGHVVSSEEVSMDPAKIEAVTNWPRTSTVSEIRSFLGLAGYYR 290

Query: 121 ------------------------DGSRSFMIYSDASKKGLGCVLMQQGRVVAYASRQLK 180
                                   DGS+SF+IYSDASKKGLGCVLMQQG+VV YASRQLK
Sbjct: 291 SPACESSFQELKQKRVTAPVLTVPDGSKSFVIYSDASKKGLGCVLMQQGKVVTYASRQLK 350

Query: 181 SHEQNYPTHDLMLTAVVFALKILRHYLYVEKIQIFTDHTSLKYFFTQKELNMRQRRWLEL 240
           SHEQNYPTHDL L AVVFALKI RHYLY EKIQI+TDH SLK+FFT KELNMRQRRWLEL
Sbjct: 351 SHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKFFFTHKELNMRQRRWLEL 410

Query: 241 VKDDDCKILYHPGKANVVADALSRKIAHSAALITKQAPLLRDFERAGIVVSVGDVTSQLA 300
           VKD DC+ILYHPGKANVVADAL+RK+AHSA LITKQAPLLRDFERA I VSVG+VTSQLA
Sbjct: 411 VKDYDCEILYHPGKANVVADALNRKVAHSATLITKQAPLLRDFERAEIAVSVGEVTSQLA 470

Query: 301 WLSIQPTLRQRIIVPQLKDPYLVEKRHLVETGRGEDFSISSDDGLTFEGRLCVPEDSAVK 360
            LS+QPTLRQRIIV QL DPYLV KR LVETG+GEDFSISSDDGL F+G LCVPEDSAVK
Sbjct: 471 QLSVQPTLRQRIIVAQLNDPYLVVKRCLVETGQGEDFSISSDDGLMFKGCLCVPEDSAVK 530

Query: 361 AELLTEAHSSPFTMHPRSTKMYQDLRCVYW 363
            ELLTEAHSSPFTMHP STKMYQDLR VYW
Sbjct: 531 TELLTEAHSSPFTMHPGSTKMYQDLRSVYW 560

[Close]

BLAST of Cmc04g0094211 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 7.4e-09
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 48  HLHRVLKTLRANKLYAKFPKCEFWLKKVTFLS--NVVSSEGVSVDPAKTEAVTSLPRPST 107
           HL  VL+    ++ YA   KC F   ++ +L   +++S EGVS DPAK EA+   P P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEIHSFLGLTDGSRSFM 124
            +E+  FLGLT   R F+
Sbjct: 63  TTELRGFLGLTGYYRRFV 80

The following BLAST results are available for this feature:

BLAST of Cmc04g0094211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051719.1	2.5e-168	76.14	pol protein [Cucumis melo var. makuwa]	[more]
TYK01306.1	2.5e-168	76.14	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032248.1	5.6e-168	80.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066451.1	4.0e-166	82.88	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042241.1	4.0e-166	79.49	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	8.4e-34	32.41	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.6e-32	31.72	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	4.6e-32	29.37	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	1.9e-30	28.20	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	2.5e-25	29.83	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0094211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UE01	1.2e-168	76.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5D3BSV9	1.2e-168	76.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5A7SNR3	2.7e-168	80.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7VLF2	1.9e-166	82.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7TKY8	1.9e-166	79.49	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00170 PE...	[more]

BLAST of Cmc04g0094211 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.4e-09	39.74	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..78 e-value: 1.3E-11 score: 44.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..117 score: 9.306096
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 119..212 e-value: 2.3E-31 score: 108.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 1.1E-27 score: 98.5
None	No IPR available	GENE3D	3.10.20.370		coord: 117..187 e-value: 2.7E-8 score: 35.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 85..184 coord: 184..241
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 85..184 coord: 184..241
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 124..237 e-value: 5.62504E-52 score: 166.899
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 6.22993E-30 score: 111.148
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094211.1	Cmc04g0094211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding