Cmc04g0088241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0088241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A
Location	CMiso1.1chr04: 888085 .. 890089 (-)
RNA-Seq Expression	Cmc04g0088241
Synteny	Cmc04g0088241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAATATTTTCAAAAGGGAACCCCAAAAGAATTATAGTTTCGGTCTCGCGAAATCCCTTGCTCCCGCCTCTCTGAATCGCTGACCGCACCACGCTCTCTCCGCTGCATTTCTCCTCTTCTTTTCCAGCAATTACCAAACTCAACGAGCGATTCATCAGAGTAATTCATCTCTTTTCTGTTATTTTTTTTTTCATTTACATTTTCTCCACTTGGTCCATGGATTTCTATTTCATAATTTTGTTGAATTCATCCAGATCTACCCAGCTTAGCTTTGTAATTTCCCTTCAGAATCCAATAACAAACCCTAAGAATTCTGTTTGTTGGGTTCCTTTTTATGAATAATTTCCCCCCTTTTTGTATAGCTGCTAAGACGAGACTTCCCAATTGGTAACACCGATTGGAATTGAACATTCTCGATCATTTATAGTGTAGCGCTGTTTGGATTGTATAAGGTCTAAGGGTTTATTTAATTTAGCTTTCAGAGGGTTTTTAGAGTTATTATATCCTGGTCACAATTTCCCATTTTGATAAAGGGTAACTTAGATTTATGCCATGGAGTTCCAACTTTCATAGTATGCTAACTAAGCTTGACATATCTTAACCCAGTTAAGGCATTGTAATTTTGATCAAATCATAGCTTGGATTCTCCAACTCCAGGTTGCTCAACTTTTACATGTTGTTGTACCCAAAAAAAGAGCTTGGGGTTCTGAAGGATTAATCTGATGAAAATTGAAACCTGAAGTTCTGAATTAGTTTGATGGCTCTGAATTCTGGAGTGTGGTGTGTGTGTGTTAGTAAAACATGTGGTGGGCTTGGTCCTGAGTTGATTGGATTTTTCTTTGAGAGCACCGTTGTTTCGTTTTATTGTGAACGAGCACTATGCTTTCTGCTTCCGAAAAATTAATTGCTTATTTTGATCTGCATTTGATGATATTTTTGGTTGTTCTTACACTCCTCCAATCCACCTCACTTCATTATCAAAACGGAACAAAATGGAAGCAACTTTTTGAGTTCCCTAGCCAACTTCTTACCTCCCTCTCTCTTGTTAGAAGTTTACCTTAATTGATAGAGAATCCTCACGAGGAACAACATGTATTAAGCAATGTGTGATGTGAATGAAATGCTGATAGATTTAAGATTCTTACATTTTGTTTGTAGTAATAGTTCTAGAATATTCGTATGAGTACTCGTTTTCAACTTTCAAGTTCCTAGAGTATGTTCAGAGTGTGCCAAGGAAACAACGTTACACATTGTAGAAGTGCAAAAGAAAAAACCGTGACTCAAGTTGATGTGGAAAAGAATAAAAACTGAGTTAGAGATCATTTTCGCTAATATTTTGTTCTTGTTGGAGTTGCCAAGAAACTAAGCACATTCCATATGTTTTTTCAATTCGTTTTATGGATTGCCGTAATTTCTGCTGAATGCAAGAGTATAGAAATGTTAGAAACCTGTTAGTTTTACCTTGAATTCTTAAATTTTCTTTCATTTGTTAATAATATCATAGTCCATCTGATACAAAGCTTTATTTCAAGCTGATATCCTGTGTAAAACACTTGTTTAAAGAATTGTGATGAATGTTTAACCTGATTGTTTTACAGATGTTTGATGATCAAGATCTCGGCTTTTTCGCAAATTTTCTCGGAATCTTTATATTTGTATTAGTAATAGCATTTCACTATGTGATGGCTGATCCAAAATATGAGGGCAACTAATCATCTCCTCTAATTTTCTTCACCATGGAGACGAACTATATCTTGATGGAGTTTGTTGGTTTGCGTTATCTACTCTTCCTTTTGCTATACTACTTTCACTAGATCAAAACTTTACCCTCTCTCATAGTATAGAATGTATTGCTCGACGGTGAAGACATTGTTTTCTTCACAAATGAAGCCTATTTTAGTGATTTTATAATACTCTTTGATTTTTTTTTTTTTTGTCTAATTAGTCCTATTCGCTACTTTTTTTTTAATTTATATTTATACCTCTTTTAGGCGAAAATATACT

mRNA sequence

TGCAATATTTTCAAAAGGGAACCCCAAAAGAATTATAGTTTCGGTCTCGCGAAATCCCTTGCTCCCGCCTCTCTGAATCGCTGACCGCACCACGCTCTCTCCGCTGCATTTCTCCTCTTCTTTTCCAGCAATTACCAAACTCAACGAGCGATTCATCAGATTCCTAGAGTATGTTCAGAATGTTTGATGATCAAGATCTCGGCTTTTTCGCAAATTTTCTCGGAATCTTTATATTTGTATTAGTAATAGCATTTCACTATGTGATGGCTGATCCAAAATATGAGGGCAACTAATCATCTCCTCTAATTTTCTTCACCATGGAGACGAACTATATCTTGATGGAGTTTGTTGGTTTGCGTTATCTACTCTTCCTTTTGCTATACTACTTTCACTAGATCAAAACTTTACCCTCTCTCATAGTATAGAATGTATTGCTCGACGGTGAAGACATTGTTTTCTTCACAAATGAAGCCTATTTTAGTGATTTTATAATACTCTTTGATTTTTTTTTTTTTTGTCTAATTAGTCCTATTCGCTACTTTTTTTTTAATTTATATTTATACCTCTTTTAGGCGAAAATATACT

Coding sequence (CDS)

ATGTTCAGAATGTTTGATGATCAAGATCTCGGCTTTTTCGCAAATTTTCTCGGAATCTTTATATTTGTATTAGTAATAGCATTTCACTATGTGATGGCTGATCCAAAATATGAGGGCAACTAA

Protein sequence

MFRMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN

Homology

[Close]

BLAST of Cmc04g0088241 vs. NCBI nr
Match: XP_008465992.1 (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis melo] >XP_011652644.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 37

[Close]

BLAST of Cmc04g0088241 vs. NCBI nr
Match: TKS17681.1 (hypothetical protein D5086_0000010520 [Populus alba])

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3   RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
           +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 66  KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 103

[Close]

BLAST of Cmc04g0088241 vs. NCBI nr
Match: KAF9676805.1 (hypothetical protein SADUNF_Sadunf08G0041300 [Salix dunnii])

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3  RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 48 KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 85

[Close]

BLAST of Cmc04g0088241 vs. NCBI nr
Match: TKS16821.1 (hypothetical protein D5086_0000016520 [Populus alba])

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3  RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 29 KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 66

[Close]

BLAST of Cmc04g0088241 vs. NCBI nr
Match: KAG5239829.1 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Salix suchowensis])

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3  RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 16 KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 53

[Close]

BLAST of Cmc04g0088241 vs. ExPASy Swiss-Prot
Match: C7J4U3 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Oryza sativa subsp. japonica OX=39947 GN=OST4A PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.3e-14
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          MFDDQDLGFFANFLGIFIFVLVIA+H+VMADPKYEGN
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVIAYHFVMADPKYEGN 37

[Close]

BLAST of Cmc04g0088241 vs. ExPASy Swiss-Prot
Match: C7J0R5 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Oryza sativa subsp. japonica OX=39947 GN=OST4B PE=3 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-12
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          MFDDQDLGFFANFLGIFIFVLV+A+H+VMAD KYEGN
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVMAYHFVMADVKYEGN 37

[Close]

BLAST of Cmc04g0088241 vs. ExPASy Swiss-Prot
Match: Q9SF57 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C OS=Arabidopsis thaliana OX=3702 GN=OST4C PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.5e-12
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYE 39
          MFDDQDLGFFANFLGIFIF+LVIA+H+VMADPK+E
Sbjct: 1  MFDDQDLGFFANFLGIFIFILVIAYHFVMADPKFE 35

[Close]

BLAST of Cmc04g0088241 vs. ExPASy Swiss-Prot
Match: Q8L986 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Arabidopsis thaliana OX=3702 GN=OST4B PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-10
Identity = 28/35 (80.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYE 39
          MFDDQDLGFFANFLGIFIF++VIA+H+V+A+PK+E
Sbjct: 1  MFDDQDLGFFANFLGIFIFIMVIAYHFVVAEPKFE 35

[Close]

BLAST of Cmc04g0088241 vs. ExPASy Swiss-Prot
Match: Q9LHK3 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Arabidopsis thaliana OX=3702 GN=OST4A PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-10
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYE 39
          M DDQDLGF ANFLGIFIF LVIA+HYV ADPKYE
Sbjct: 1  MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKYE 35

[Close]

BLAST of Cmc04g0088241 vs. ExPASy TrEMBL
Match: A0A4U5R364 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000010520 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3   RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
           +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 66  KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 103

[Close]

BLAST of Cmc04g0088241 vs. ExPASy TrEMBL
Match: A0A4U5R0Y1 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000016520 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3  RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 29 KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 66

[Close]

BLAST of Cmc04g0088241 vs. ExPASy TrEMBL
Match: A0A2I0L1W5 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005026 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3  RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 58 KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 95

[Close]

BLAST of Cmc04g0088241 vs. ExPASy TrEMBL
Match: A0A2C9V2R1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G032300 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 3   RMFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
           +MFDDQDLGFFANFLGIFIFVLVIA+HYVMADPKYEGN
Sbjct: 66  KMFDDQDLGFFANFLGIFIFVLVIAYHYVMADPKYEGN 103

[Close]

BLAST of Cmc04g0088241 vs. ExPASy TrEMBL
Match: A0A1S3CQ71 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Cucumis melo OX=3656 GN=LOC103503558 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 41
          MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYEGN 37

[Close]

BLAST of Cmc04g0088241 vs. TAIR 10
Match: AT5G02502.1 (Oligosaccaryltransferase )

HSP 1 Score: 65.9 bits (159), Expect = 8.7e-12
Identity = 28/35 (80.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYE 39
          MFDDQDLGFFANFLGIFIF++VIA+H+V+A+PK+E
Sbjct: 1  MFDDQDLGFFANFLGIFIFIMVIAYHFVVAEPKFE 35

[Close]

BLAST of Cmc04g0088241 vs. TAIR 10
Match: AT3G12587.1 (Oligosaccaryltransferase )

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-11
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 4  MFDDQDLGFFANFLGIFIFVLVIAFHYVMADPKYE 39
          M DDQDLGF ANFLGIFIF LVIA+HYV ADPKYE
Sbjct: 1  MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKYE 35

The following BLAST results are available for this feature:

BLAST of Cmc04g0088241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465992.1	6.2e-12	100.00	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]
TKS17681.1	6.2e-12	94.74	hypothetical protein D5086_0000010520 [Populus alba]	[more]
KAF9676805.1	6.2e-12	94.74	hypothetical protein SADUNF_Sadunf08G0041300 [Salix dunnii]	[more]
TKS16821.1	6.2e-12	94.74	hypothetical protein D5086_0000016520 [Populus alba]	[more]
KAG5239829.1	6.2e-12	94.74	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Salix suchowensi...	[more]

BLAST of Cmc04g0088241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C7J4U3	5.3e-14	94.59	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Ory...	[more]
C7J0R5	1.3e-12	89.19	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Ory...	[more]
Q9SF57	8.5e-12	88.57	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C OS=Ara...	[more]
Q8L986	1.2e-10	80.00	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Ara...	[more]
Q9LHK3	2.7e-10	85.71	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Ara...	[more]

BLAST of Cmc04g0088241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5R364	3.0e-12	94.74	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000010520 PE=3 SV=1	[more]
A0A4U5R0Y1	3.0e-12	94.74	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000016520 PE=3 SV=1	[more]
A0A2I0L1W5	3.0e-12	94.74	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005026 PE=3 SV=1	[more]
A0A2C9V2R1	3.0e-12	94.74	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G032300 PE=3 SV=...	[more]
A0A1S3CQ71	3.0e-12	100.00	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Cuc...	[more]

BLAST of Cmc04g0088241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02502.1	8.7e-12	80.00	Oligosaccaryltransferase	[more]
AT3G12587.1	1.9e-11	85.71	Oligosaccaryltransferase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018943	Oligosaccaryltransferase	PFAM	PF10215	Ost4	coord: 4..36 e-value: 2.2E-13 score: 49.8
IPR044165	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4, plant	PANTHER	PTHR28677	DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 4A-RELATED	coord: 2..40
IPR036330	Oligosaccharyltransferase subunit ost4p superfamily	SUPERFAMILY	103464	Oligosaccharyltransferase subunit ost4p	coord: 4..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0088241.1	Cmc04g0088241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
molecular_function	GO:0016740	transferase activity