Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAGATAGATCTAGATTTCTTAATAAATCGAACATGATGAAGAAACGATAGTAAGAGAGGAAGAAGCTAGGGTTTCTAACAGGTGGAAAAACGAAAAGAAAATATTAATACAAAATTCTTGCCCTTTGCTTAAGAGTTTGTCATTTGTTTCACATTTCTAGATTTGAGCTATATGATTGTTCCTTAAACTTTGATATCAAGCTCTGAGGGTACGTGAGTGCAAATTTTTGACCTTTGGGTCAAATTGGCCTGTCTCGACCTCATCCCCAACCAAGACGAAAGATGGTGAGTTCATGGAGCCTTGCCTTGTTTTATGTGTATTAAGAAAAGATATGGAAGATTTATTTACTATGATTTCCTTTCATCAATCCACAAATTAATATTCTCTCATCTCTAAACATCCAAATTTTCCATTGAATCACAAAACTAGATAATATGAACACCAATCCTCTATTCTTCTTGGTTTGATCACTTACCCACACAATGATTTAAGCAATAAAACTCATCAATTCATCTATCAACCAAAGGAACAACGTGAGAATGTGAAAGAATGTTTTAATCTAATTTAAGTGAAACTCACCAACACAATAAATGCAGCCAAAACGAAACTGAAACCAAAAAACTTGTAAGAATCAAATTCATCGGCACCAATTAAATGAATTCCTAAACTGCTTTTTCAATTTAAAACCTAAACGAATTTCATATTTCCGTTTCTATCTCTCTATTCATATATATATGCATATATATAAACAGCAAATCGAAGAAGGAAGATGTAGAATCAATCATTCAACCAATCAAAGGAAAAGGGAGTGAAGAAGAAGAAGAAGATCAAACGAACCTGACAATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACACCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGAAGGGTTAAATAGTAAAATCTCACCGTTTATTCGGATGGTTTTCGATTTCGCTAAATTTTACTTTTTCTTTCTTACTAAATAAAACGGATTTTGTGATATAAAGTATTACTCTAAATACTTTATTTCATTTCAAGCCAATATATATTGGTAAAATAATTTAATACAATAAGTATAAAACTCGATGTATGTT
mRNA sequence
TGGAGATAGATCTAGATTTCTTAATAAATCGAACATGATGAAGAAACGATAGTAAGAGAGGAAGAAGCTAGGGTTTCTAACAGGTGGAAAAACGAAAAGAAAATATTAATACAAAATTCTTGCCCTTTGCTTAAGAGTTTGTCATTTGTTTCACATTTCTAGATTTGAGCTATATGATTGTTCCTTAAACTTTGATATCAAGCTCTGAGGGTACGTGAGTGCAAATTTTTGACCTTTGGGTCAAATTGGCCTGTCTCGACCTCATCCCCAACCAAGACGAAAGATGCAAATCGAAGAAGGAAGATGTAGAATCAATCATTCAACCAATCAAAGGAAAAGGGAGTGAAGAAGAAGAAGAAGATCAAACGAACCTGACAATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACACCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGAAGGGTTAAATAGTAAAATCTCACCGTTTATTCGGATGGTTTTCGATTTCGCTAAATTTTACTTTTTCTTTCTTACTAAATAAAACGGATTTTGTGATATAAAGTATTACTCTAAATACTTTATTTCATTTCAAGCCAATATATATTGGTAAAATAATTTAATACAATAAGTATAAAACTCGATGTATGTT
Coding sequence (CDS)
ATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACACCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGA
Protein sequence
MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDEN
Homology
BLAST of Cmc04g0087651 vs. NCBI nr
Match:
KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])
HSP 1 Score: 248.4 bits (633), Expect = 3.1e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN
Sbjct: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
Query: 61 EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61 EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
Query: 121 DEN 124
DEN
Sbjct: 121 DEN 123
BLAST of Cmc04g0087651 vs. NCBI nr
Match:
XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 171.0 bits (432), Expect = 6.3e-39
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 0
Query: 1 MSKSFRFFGFFLCALAISSSFQ--SAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQI 60
M KS RF GF L ALAISSS Q SAFA+R I EA+ SAD CWDAI AVEGCQ++I
Sbjct: 1 MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60
Query: 61 DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 118
D AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS E+SGAVNEYCDGMGITPPVL
Sbjct: 61 DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120
BLAST of Cmc04g0087651 vs. NCBI nr
Match:
KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0
Query: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60
MSKS RFFGFFL AL ISS SAFA+RK +A+ SAD C DA+NAVEGCQ +ID
Sbjct: 1 MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60
Query: 61 AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 114
A+ SNEIEVSY+CC+VILHG+PEKCAAVVFSSGGE S E+SGAV EYCDGMGITPPVL
Sbjct: 61 AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118
BLAST of Cmc04g0087651 vs. NCBI nr
Match:
KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])
HSP 1 Score: 127.5 bits (319), Expect = 8.0e-26
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0
Query: 63 EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDE 122
+VSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV+E
Sbjct: 6 KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65
Query: 123 N 124
N
Sbjct: 66 N 66
BLAST of Cmc04g0087651 vs. NCBI nr
Match:
PPR81469.1 (hypothetical protein GOBAR_AA39249 [Gossypium barbadense])
HSP 1 Score: 60.8 bits (146), Expect = 9.2e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0
Query: 39 CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
CW IN GC+++I ++ +I++SY CC+ + GM KC +F+ G FSPE
Sbjct: 36 CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95
Query: 99 VNEYCDGMGITPP 112
+ YC +G+T P
Sbjct: 96 IKGYCATLGVTLP 106
BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match:
A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)
HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN
Sbjct: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
Query: 61 EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61 EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
Query: 121 DEN 124
DEN
Sbjct: 121 DEN 123
BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match:
A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0
Query: 1 MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
MSKS RFFGFFLC LA SSSF SAFAVRKIAEAVYS+DCWDAINAV+GCQN+IDTAMKSN
Sbjct: 1 MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
Query: 61 EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61 EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
Query: 121 DEN 124
+EN
Sbjct: 121 EEN 123
BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match:
A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 3.1e-39
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 0
Query: 1 MSKSFRFFGFFLCALAISSSFQ--SAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQI 60
M KS RF GF L ALAISSS Q SAFA+R I EA+ SAD CWDAI AVEGCQ++I
Sbjct: 1 MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60
Query: 61 DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 118
D AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS E+SGAVNEYCDGMGITPPVL
Sbjct: 61 DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120
BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match:
A0A5D2P8P3 (Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G228100v1 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0
Query: 39 CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
CW IN GC+++I ++ +I++SY CC+ + GM KC +F+ G FSPE
Sbjct: 47 CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 106
Query: 99 VNEYCDGMGITPP 112
+ YC +G+T P
Sbjct: 107 IKGYCATLGVTLP 117
BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match:
A0A2P5VRJ4 (Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0
Query: 39 CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
CW IN GC+++I ++ +I++SY CC+ + GM KC +F+ G FSPE
Sbjct: 36 CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95
Query: 99 VNEYCDGMGITPP 112
+ YC +G+T P
Sbjct: 96 IKGYCATLGVTLP 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0038539.1 | 3.1e-62 | 100.00 | hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... | [more] |
| XP_022931003.1 | 6.3e-39 | 74.19 | uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... | [more] |
| KAG6571831.1 | 1.4e-38 | 73.73 | hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAE8652857.1 | 8.0e-26 | 95.08 | hypothetical protein Csa_023774, partial [Cucumis sativus] | [more] |
| PPR81469.1 | 9.2e-06 | 36.99 | hypothetical protein GOBAR_AA39249 [Gossypium barbadense] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TB28 | 1.5e-62 | 100.00 | Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A0A0LEG0 | 3.8e-58 | 92.68 | Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040... | [more] |
| A0A6J1EX44 | 3.1e-39 | 74.19 | uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373... | [more] |
| A0A5D2P8P3 | 4.5e-06 | 36.99 | Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES33... | [more] |
| A0A2P5VRJ4 | 4.5e-06 | 36.99 | Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
