Cmc04g0087651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0087651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Prolamin_like domain-containing protein
Location	CMiso1.1chr04: 572214 .. 573620 (-)
RNA-Seq Expression	Cmc04g0087651
Synteny	Cmc04g0087651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGATAGATCTAGATTTCTTAATAAATCGAACATGATGAAGAAACGATAGTAAGAGAGGAAGAAGCTAGGGTTTCTAACAGGTGGAAAAACGAAAAGAAAATATTAATACAAAATTCTTGCCCTTTGCTTAAGAGTTTGTCATTTGTTTCACATTTCTAGATTTGAGCTATATGATTGTTCCTTAAACTTTGATATCAAGCTCTGAGGGTACGTGAGTGCAAATTTTTGACCTTTGGGTCAAATTGGCCTGTCTCGACCTCATCCCCAACCAAGACGAAAGATGGTGAGTTCATGGAGCCTTGCCTTGTTTTATGTGTATTAAGAAAAGATATGGAAGATTTATTTACTATGATTTCCTTTCATCAATCCACAAATTAATATTCTCTCATCTCTAAACATCCAAATTTTCCATTGAATCACAAAACTAGATAATATGAACACCAATCCTCTATTCTTCTTGGTTTGATCACTTACCCACACAATGATTTAAGCAATAAAACTCATCAATTCATCTATCAACCAAAGGAACAACGTGAGAATGTGAAAGAATGTTTTAATCTAATTTAAGTGAAACTCACCAACACAATAAATGCAGCCAAAACGAAACTGAAACCAAAAAACTTGTAAGAATCAAATTCATCGGCACCAATTAAATGAATTCCTAAACTGCTTTTTCAATTTAAAACCTAAACGAATTTCATATTTCCGTTTCTATCTCTCTATTCATATATATATGCATATATATAAACAGCAAATCGAAGAAGGAAGATGTAGAATCAATCATTCAACCAATCAAAGGAAAAGGGAGTGAAGAAGAAGAAGAAGATCAAACGAACCTGACAATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACACCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGAAGGGTTAAATAGTAAAATCTCACCGTTTATTCGGATGGTTTTCGATTTCGCTAAATTTTACTTTTTCTTTCTTACTAAATAAAACGGATTTTGTGATATAAAGTATTACTCTAAATACTTTATTTCATTTCAAGCCAATATATATTGGTAAAATAATTTAATACAATAAGTATAAAACTCGATGTATGTT

mRNA sequence

TGGAGATAGATCTAGATTTCTTAATAAATCGAACATGATGAAGAAACGATAGTAAGAGAGGAAGAAGCTAGGGTTTCTAACAGGTGGAAAAACGAAAAGAAAATATTAATACAAAATTCTTGCCCTTTGCTTAAGAGTTTGTCATTTGTTTCACATTTCTAGATTTGAGCTATATGATTGTTCCTTAAACTTTGATATCAAGCTCTGAGGGTACGTGAGTGCAAATTTTTGACCTTTGGGTCAAATTGGCCTGTCTCGACCTCATCCCCAACCAAGACGAAAGATGCAAATCGAAGAAGGAAGATGTAGAATCAATCATTCAACCAATCAAAGGAAAAGGGAGTGAAGAAGAAGAAGAAGATCAAACGAACCTGACAATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACACCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGAAGGGTTAAATAGTAAAATCTCACCGTTTATTCGGATGGTTTTCGATTTCGCTAAATTTTACTTTTTCTTTCTTACTAAATAAAACGGATTTTGTGATATAAAGTATTACTCTAAATACTTTATTTCATTTCAAGCCAATATATATTGGTAAAATAATTTAATACAATAAGTATAAAACTCGATGTATGTT

Coding sequence (CDS)

ATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACACCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGA

Protein sequence

MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDEN

Homology

[Close]

BLAST of Cmc04g0087651 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 3.1e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
           MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 DEN 124
           DEN
Sbjct: 121 DEN 123

[Close]

BLAST of Cmc04g0087651 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.0 bits (432), Expect = 6.3e-39
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQ--SAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQI 60
           M KS RF GF L ALAISSS Q  SAFA+R I EA+ SAD     CWDAI AVEGCQ++I
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 118
           D AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS E+SGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

[Close]

BLAST of Cmc04g0087651 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60
           MSKS RFFGFFL AL ISS   SAFA+RK  +A+ SAD     C DA+NAVEGCQ +ID 
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 114
           A+ SNEIEVSY+CC+VILHG+PEKCAAVVFSSGGE S E+SGAV EYCDGMGITPPVL
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

[Close]

BLAST of Cmc04g0087651 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 8.0e-26
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 63  EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDE 122
           +VSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV+E
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

Query: 123 N 124
           N
Sbjct: 66  N 66

[Close]

BLAST of Cmc04g0087651 vs. NCBI nr
Match: PPR81469.1 (hypothetical protein GOBAR_AA39249 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 9.2e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN   GC+++I  ++   +I++SY CC+ +  GM  KC   +F+  G FSPE    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

[Close]

BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
           MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 DEN 124
           DEN
Sbjct: 121 DEN 123

[Close]

BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
           MSKS RFFGFFLC LA SSSF SAFAVRKIAEAVYS+DCWDAINAV+GCQN+IDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 DEN 124
           +EN
Sbjct: 121 EEN 123

[Close]

BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.1e-39
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQ--SAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQI 60
           M KS RF GF L ALAISSS Q  SAFA+R I EA+ SAD     CWDAI AVEGCQ++I
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 118
           D AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS E+SGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

[Close]

BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match: A0A5D2P8P3 (Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G228100v1 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN   GC+++I  ++   +I++SY CC+ +  GM  KC   +F+  G FSPE    
Sbjct: 47  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 106

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 107 IKGYCATLGVTLP 117

[Close]

BLAST of Cmc04g0087651 vs. ExPASy TrEMBL
Match: A0A2P5VRJ4 (Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN   GC+++I  ++   +I++SY CC+ +  GM  KC   +F+  G FSPE    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

The following BLAST results are available for this feature:

BLAST of Cmc04g0087651 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038539.1	3.1e-62	100.00	hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136...	[more]
XP_022931003.1	6.3e-39	74.19	uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet...	[more]
KAG6571831.1	1.4e-38	73.73	hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652857.1	8.0e-26	95.08	hypothetical protein Csa_023774, partial [Cucumis sativus]	[more]
PPR81469.1	9.2e-06	36.99	hypothetical protein GOBAR_AA39249 [Gossypium barbadense]	[more]

BLAST of Cmc04g0087651 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0087651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TB28	1.5e-62	100.00	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LEG0	3.8e-58	92.68	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040...	[more]
A0A6J1EX44	3.1e-39	74.19	uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A5D2P8P3	4.5e-06	36.99	Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES33...	[more]
A0A2P5VRJ4	4.5e-06	36.99	Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR...	[more]

BLAST of Cmc04g0087651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 38..104 e-value: 5.3E-9 score: 36.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0087651.1	Cmc04g0087651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity