CmaCh18G009990 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G009990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionReticulon-like protein
LocationCma_Chr18: 8408248 .. 8408590 (-)
RNA-Seq ExpressionCmaCh18G009990
SyntenyCmaCh18G009990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAATGTGAAAGCAAGAAGATCCTTACTCGTAAGCAATGCTCAATGGCCAAGTGTTGTGTCCTGATCTGTAGAAATGGTAAGTGTACGGTAAGAAAGCCTCTAGTAAGCAATGCTCAATGACCAAGTGTTGTGTCCTGATCTGTAGAAATGGTAAGTGTACGGTAAGAAAGCCTCTAGTTTCTGCTTTACAGAGGGCAGGGACCCACTTATGGAAACACAGCGTTGGCTTGCTTGCCTGGTGTTCATAGGACCTGTAACAAAGTTTCTGATTCCACTATACCAAGTAAGTTTTCTGAGCTACTTTTTAATGTCTATTAATTGTGAGCTAAATGGATGA

mRNA sequence

ATGAAAGAATGTGAAAGCAAGAAGATCCTTACTCGTAAGCAATGCTCAATGGCCAAGTGTTGTGTCCTGATCTGTAGAAATGAGGGCAGGGACCCACTTATGGAAACACAGCGTTGGCTTGCTTGCCTGGTGTTCATAGGACCTGTAACAAAGTTTCTGATTCCACTATACCAAGTAAGTTTTCTGAGCTACTTTTTAATGTCTATTAATTGTGAGCTAAATGGATGA

Coding sequence (CDS)

ATGAAAGAATGTGAAAGCAAGAAGATCCTTACTCGTAAGCAATGCTCAATGGCCAAGTGTTGTGTCCTGATCTGTAGAAATGAGGGCAGGGACCCACTTATGGAAACACAGCGTTGGCTTGCTTGCCTGGTGTTCATAGGACCTGTAACAAAGTTTCTGATTCCACTATACCAAGTAAGTTTTCTGAGCTACTTTTTAATGTCTATTAATTGTGAGCTAAATGGATGA

Protein sequence

MKECESKKILTRKQCSMAKCCVLICRNEGRDPLMETQRWLACLVFIGPVTKFLIPLYQVSFLSYFLMSINCELNG
Homology
[Close]
BLAST of CmaCh18G009990 vs. ExPASy TrEMBL
Match: A0A6J1G247 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449961 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 33/43 (76.74%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 1  MKECESKKILTRKQCSMAKCCVLICRNEGRDPLMETQRWLACL 44
          MKECESK+ILTRKQCSMAKC VLICRNEGR P       LACL
Sbjct: 1  MKECESKRILTRKQCSMAKCSVLICRNEGRGP-TNGNTALACL 42

[Close]
BLAST of CmaCh18G009990 vs. NCBI nr
Match: KAG7013004.1 (Reticulon-like protein B9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 8.6e-23
Identity = 62/84 (73.81%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1   MKECESKKILTRKQCSMAKCCVLICRN--------------EGRDPLMETQRWLACLVFI 60
           MKECESK+ILTRKQCSMAKC VLIC N                 DPLMETQRWLACLVFI
Sbjct: 56  MKECESKRILTRKQCSMAKCSVLICSNGKCTVRKPLVSALQRAGDPLMETQRWLACLVFI 115

Query: 61  GPVTKFLIPLYQVSFLSYFLMSIN 71
           GPVTKFLIP YQVSFLSY LMSIN
Sbjct: 116 GPVTKFLIPPYQVSFLSYCLMSIN 139

[Close]
BLAST of CmaCh18G009990 vs. NCBI nr
Match: XP_022945840.1 (reticulon-like protein B14 isoform X3 [Cucurbita moschata])

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 33/43 (76.74%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 1  MKECESKKILTRKQCSMAKCCVLICRNEGRDPLMETQRWLACL 44
          MKECESK+ILTRKQCSMAKC VLICRNEGR P       LACL
Sbjct: 1  MKECESKRILTRKQCSMAKCSVLICRNEGRGP-TNGNTALACL 42

The following BLAST results are available for this feature:
BLAST of CmaCh18G009990 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G009990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G2471.1e-0776.74Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449961 PE=4 SV=1[more]
BLAST of CmaCh18G009990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013004.18.6e-2373.81Reticulon-like protein B9, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022945840.12.3e-0776.74reticulon-like protein B14 isoform X3 [Cucurbita moschata][more]
BLAST of CmaCh18G009990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G009990.1CmaCh18G009990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009617 response to bacterium
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane