Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGATTTCGGGGATTACTATGTTGGTTTGAGAGGCTGAAGCTGCCAGCATGATCTGAAGGAAATGGGTGTTAAGGGTTCAGATCATCTTGCAGCTTCAATCACTCATTCACCAACAAATTCATCAGCTTAGGGTTTTCATTTACAACACTTTCTTCATTTCAGGTACACATCATGTTCTATTCATTCCCATTTATAAACCTAATTCTATACATTCATTCTTTGTTTATACTTTATATGAGATCTCACGTCGGTTGGAGAGGAAAACGAAGCATTGGTGTGGAAATCTCTCTTTAGCAGACACGTTTTAAAAACTTTGAGAAAAACTCGAAAAAGAAAGTCCAAAGAAGACAACATATATGCTGCTAGTGGTGGATTTGAGTTATTACGGTTTATTCGGTAGGTGGGTCTAAAGTGATTATTGGTGGATTCAAATGTATATTTGAGAAGGTAGTTAAGCTATTTGTTTCGATGGATGATTTCCAGCCTAATCTTGCTTCTTTGCTACTAAATCCTTTAAGATGTATGAACCTGAATCTAAACCTGAACCCATGTTTTAATAGTCCTTCAATAGTTTTCACGTCTTTGGATAAAGCGTGAGACGTATGAAATTGAAGTCAATATCGTACATAAACCTTTCGAGCTTATTTGATACTAAATTCAAGTTTAAGACGTCAGAAACTAAACTCGTGCTTCAATTTCTAATTTTCATGTTTGGAAATCTATATAAATCATTTGTTAATTCTATCCAATTTCATTGGTACTAAATTAAAGTTTAAAATTACTAAGTTTGAACTCGTTCTTGCTTGAATTACTCTGAAATAGTTTCCACATCTCTTAAACAAATGCTGGGAATAAGTTTCATATTGATTGTAGAGGAGAACAAATCATTCCTTATAAGAGTGGAAACTTCCATCAGACACGTTAAAAAACCTTGAGGGGAAGCCCTAAAGAGAAATCCTTGTGAGGACAATATCAACTAGTGGTAGGCTTAGACTGTTACACAATATAATCCTCCTTACCTCTCCCGTGCTTATTTGACATTAGATTCATGTTTAAGATGTTTGAACCTGAACCCGTTCTTCAATTACTCTTGATTAGCTTTTACATCTAACGAAAAAATACGAGATATATGAAATGGAAGTCAATGCGGTCTTTTCTCTCTATAGAAGTTGTTTTCACACAATTACACCATGCATGTCTGGTCTCAATTGTCTCAGCTTTGTAGTAGCAACCACACTCCACAAATCAAATTAGCTCGTAAATTCTAAACCTTTAGGCTTATAAGGTCCGTCTAAATTATGTTTGAATACGATTTGAATTTTGTGTCGTAAAAGTCATGTCTTATCCTCGATAAACACATCGGTTTAGAAACTAAACTTGTAATCTAAGTTTATTGTTTTATATTTTTTAAAAAAAATGAAAAGAGAAACCATATTAATTAATTAAGATATATCTCTTTGATACTTTGTATTTGGACAATTTATTTTTATTAATTGTATTTCACATGTCAAATAAAGTTGAAGAATTTAAAATGTCGAGATGAGATGTCAGTGTCGGAGTCGATGCCAACATCGATATCAATATTGATAGATGTCTATATTTCCAAATTTAAATTTGTTGTTCTCTACGTGTTTTAATTTAAAAATCCAAATTAAAAAATTTCGAGATTTTAAATTTTCTCACACTCGAACAAAGCTAAAAAATACAAACCCGATCATTGAAACTTTGGCTTGATAAATGTATCAAATCGTCTTTAATATTTTAGTTAATTTTTAAATGGATTAATAGTTTTTTAAAATTTTTAATTCTAATTTCAATTGCTTAAAATATAAAATTAATATTTAAAATATTAATAGCTAATTTATAAATAAATAAAAATAGGGGTAATTTAGGAAATTTGTGGCCATATTTTATTTTTCCTGAAAAGGAGGGCTCATTTTATACCCTAACTAATTTTGCAGAACCCTTTTCTCTTCCCTCTCAAATGGTGTGGGGCCCTACAAAGGGAAATAGAGATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCATCTGAACCGATCTTTTGCAGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGCAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGAAATCATCCTAGATCCCTGAATTGAACGCCGTGGGAGATTGAAACGGGAATCGACGAAGCTTTTTGAATTGAGATTTTGTAGATCGTAATAATGTTCTTTTGATGTTCATAATAATGTAATTGACGTAATTATAGATGTAAATCGATCAGAAGTTGAGTTGTTGCTGCAATTCGACGCTAACTTACAAATTTGGTTACATGATTTTCAGAAAATTAAAATTTGTTCTTGATTTCTGGGTTACAATTAGTCCCATAGGTTTTATCCATCCATATAAGATTATTATGAAATTTATTGACAAGGAACTATATTTATT
mRNA sequence
ATGTTTGAGATTTCGGGGATTACTATCTTCAATCACTCATTCACCAACAAATTCATCAGCTTAGGGTTTTCATTTACAACACTTTCTTCATTTCAGAACCCTTTTCTCTTCCCTCTCAAATGGTGTGGGGCCCTACAAAGGGAAATAGAGATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCATCTGAACCGATCTTTTGCAGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGCAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGAAATCATCCTAGATCCCTGAATTGAACGCCGTGGGAGATTGAAACGGGAATCGACGAAGCTTTTTGAATTGAGATTTTGTAGATCGTAATAATGTTCTTTTGATGTTCATAATAATGTAATTGACGTAATTATAGATGTAAATCGATCAGAAGTTGAGTTGTTGCTGCAATTCGACGCTAACTTACAAATTTGGTTACATGATTTTCAGAAAATTAAAATTTGTTCTTGATTTCTGGGTTACAATTAGTCCCATAGGTTTTATCCATCCATATAAGATTATTATGAAATTTATTGACAAGGAACTATATTTATT
Coding sequence (CDS)
ATGTTTGAGATTTCGGGGATTACTATCTTCAATCACTCATTCACCAACAAATTCATCAGCTTAGGGTTTTCATTTACAACACTTTCTTCATTTCAGAACCCTTTTCTCTTCCCTCTCAAATGGTGTGGGGCCCTACAAAGGGAAATAGAGATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCATCTGAACCGATCTTTTGCAGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGCAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA
Protein sequence
MFEISGITIFNHSFTNKFISLGFSFTTLSSFQNPFLFPLKWCGALQREIEMVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Homology
BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match:
A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)
HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match:
A0A6J1GSM0 (uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC111457119 PE=4 SV=1)
HSP 1 Score: 198.0 bits (502), Expect = 2.7e-47
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94
BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match:
A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.0e-38
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1 MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93
BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match:
A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)
HSP 1 Score: 164.5 bits (415), Expect = 3.4e-37
Identity = 79/96 (82.29%), Postives = 86/96 (89.58%), Query Frame = 0
Query: 51 MVPTGKAPI--GGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNE 110
M+PTG+API GG GGCERLEQALRDCH+R+P+GPARRS C HLNRS AECLVAT CPNE
Sbjct: 14 MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73
Query: 111 AEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
AEAVRTLCS+ GTALKRSQC+QAKFS S CLSSLQL
Sbjct: 74 AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 109
BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match:
A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.3e-36
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1 MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93
BLAST of CmaCh18G005580 vs. NCBI nr
Match:
XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])
HSP 1 Score: 199.1 bits (505), Expect = 2.5e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
BLAST of CmaCh18G005580 vs. NCBI nr
Match:
XP_022955041.1 (uncharacterized protein LOC111457119 [Cucurbita moschata])
HSP 1 Score: 198.0 bits (502), Expect = 5.7e-47
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94
BLAST of CmaCh18G005580 vs. NCBI nr
Match:
KAG6573459.1 (hypothetical protein SDJN03_27346, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012607.1 hypothetical protein SDJN02_25359, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
MVPTGKAPIGGDGGCERLE+ALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1 MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94
BLAST of CmaCh18G005580 vs. NCBI nr
Match:
XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 194.1 bits (492), Expect = 8.2e-46
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0
Query: 51 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1 MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94
BLAST of CmaCh18G005580 vs. NCBI nr
Match:
XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])
HSP 1 Score: 170.6 bits (431), Expect = 9.7e-39
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 0
Query: 50 EMVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEA 109
EM+PTG A I GDGGCERLEQALR+CHKRLPEGPARRS C HLNRS AECLVAT CP+EA
Sbjct: 5 EMLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACPSEA 64
Query: 110 EAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
EAVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 65 EAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 98
BLAST of CmaCh18G005580 vs. TAIR 10
Match:
AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 131.3 bits (329), Expect = 6.1e-31
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query: 45 LQREIEMVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATV 104
L RE+ + TGK C+RLE+AL CH+R+PEGPARRSGC HLN++FAEC+VA
Sbjct: 14 LHREMRRIHTGKIREIPMKSCDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEA 73
Query: 105 CPNEAEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
CP E+EAVR+LCSSGGT+LKR QCE A+ S SLCLS Q
Sbjct: 74 CPEESEAVRSLCSSGGTSLKRKQCEYAQLSLSLCLSRHQ 112
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1K2P5 | 1.2e-47 | 100.00 | uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507... | [more] |
| A0A6J1GSM0 | 2.7e-47 | 98.94 | uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC1114571... | [more] |
| A0A0A0LYC1 | 1.0e-38 | 83.87 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1 | [more] |
| A0A6J1CN74 | 3.4e-37 | 82.29 | uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
| A0A5D3CLT3 | 1.3e-36 | 81.72 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022994930.1 | 2.5e-47 | 100.00 | uncharacterized protein LOC111490507 [Cucurbita maxima] | [more] |
| XP_022955041.1 | 5.7e-47 | 98.94 | uncharacterized protein LOC111457119 [Cucurbita moschata] | [more] |
| KAG6573459.1 | 1.6e-46 | 97.87 | hypothetical protein SDJN03_27346, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023542217.1 | 8.2e-46 | 98.94 | uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo] | [more] |
| XP_038893663.1 | 9.7e-39 | 87.23 | uncharacterized protein LOC120082530 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G31175.1 | 6.1e-31 | 62.63 | unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac... | [more] |
