CmaCh18G005580 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G005580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCOX assembly mitochondrial protein
LocationCma_Chr18: 3668422 .. 3671041 (+)
RNA-Seq ExpressionCmaCh18G005580
SyntenyCmaCh18G005580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGATTTCGGGGATTACTATGTTGGTTTGAGAGGCTGAAGCTGCCAGCATGATCTGAAGGAAATGGGTGTTAAGGGTTCAGATCATCTTGCAGCTTCAATCACTCATTCACCAACAAATTCATCAGCTTAGGGTTTTCATTTACAACACTTTCTTCATTTCAGGTACACATCATGTTCTATTCATTCCCATTTATAAACCTAATTCTATACATTCATTCTTTGTTTATACTTTATATGAGATCTCACGTCGGTTGGAGAGGAAAACGAAGCATTGGTGTGGAAATCTCTCTTTAGCAGACACGTTTTAAAAACTTTGAGAAAAACTCGAAAAAGAAAGTCCAAAGAAGACAACATATATGCTGCTAGTGGTGGATTTGAGTTATTACGGTTTATTCGGTAGGTGGGTCTAAAGTGATTATTGGTGGATTCAAATGTATATTTGAGAAGGTAGTTAAGCTATTTGTTTCGATGGATGATTTCCAGCCTAATCTTGCTTCTTTGCTACTAAATCCTTTAAGATGTATGAACCTGAATCTAAACCTGAACCCATGTTTTAATAGTCCTTCAATAGTTTTCACGTCTTTGGATAAAGCGTGAGACGTATGAAATTGAAGTCAATATCGTACATAAACCTTTCGAGCTTATTTGATACTAAATTCAAGTTTAAGACGTCAGAAACTAAACTCGTGCTTCAATTTCTAATTTTCATGTTTGGAAATCTATATAAATCATTTGTTAATTCTATCCAATTTCATTGGTACTAAATTAAAGTTTAAAATTACTAAGTTTGAACTCGTTCTTGCTTGAATTACTCTGAAATAGTTTCCACATCTCTTAAACAAATGCTGGGAATAAGTTTCATATTGATTGTAGAGGAGAACAAATCATTCCTTATAAGAGTGGAAACTTCCATCAGACACGTTAAAAAACCTTGAGGGGAAGCCCTAAAGAGAAATCCTTGTGAGGACAATATCAACTAGTGGTAGGCTTAGACTGTTACACAATATAATCCTCCTTACCTCTCCCGTGCTTATTTGACATTAGATTCATGTTTAAGATGTTTGAACCTGAACCCGTTCTTCAATTACTCTTGATTAGCTTTTACATCTAACGAAAAAATACGAGATATATGAAATGGAAGTCAATGCGGTCTTTTCTCTCTATAGAAGTTGTTTTCACACAATTACACCATGCATGTCTGGTCTCAATTGTCTCAGCTTTGTAGTAGCAACCACACTCCACAAATCAAATTAGCTCGTAAATTCTAAACCTTTAGGCTTATAAGGTCCGTCTAAATTATGTTTGAATACGATTTGAATTTTGTGTCGTAAAAGTCATGTCTTATCCTCGATAAACACATCGGTTTAGAAACTAAACTTGTAATCTAAGTTTATTGTTTTATATTTTTTAAAAAAAATGAAAAGAGAAACCATATTAATTAATTAAGATATATCTCTTTGATACTTTGTATTTGGACAATTTATTTTTATTAATTGTATTTCACATGTCAAATAAAGTTGAAGAATTTAAAATGTCGAGATGAGATGTCAGTGTCGGAGTCGATGCCAACATCGATATCAATATTGATAGATGTCTATATTTCCAAATTTAAATTTGTTGTTCTCTACGTGTTTTAATTTAAAAATCCAAATTAAAAAATTTCGAGATTTTAAATTTTCTCACACTCGAACAAAGCTAAAAAATACAAACCCGATCATTGAAACTTTGGCTTGATAAATGTATCAAATCGTCTTTAATATTTTAGTTAATTTTTAAATGGATTAATAGTTTTTTAAAATTTTTAATTCTAATTTCAATTGCTTAAAATATAAAATTAATATTTAAAATATTAATAGCTAATTTATAAATAAATAAAAATAGGGGTAATTTAGGAAATTTGTGGCCATATTTTATTTTTCCTGAAAAGGAGGGCTCATTTTATACCCTAACTAATTTTGCAGAACCCTTTTCTCTTCCCTCTCAAATGGTGTGGGGCCCTACAAAGGGAAATAGAGATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCATCTGAACCGATCTTTTGCAGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGCAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGAAATCATCCTAGATCCCTGAATTGAACGCCGTGGGAGATTGAAACGGGAATCGACGAAGCTTTTTGAATTGAGATTTTGTAGATCGTAATAATGTTCTTTTGATGTTCATAATAATGTAATTGACGTAATTATAGATGTAAATCGATCAGAAGTTGAGTTGTTGCTGCAATTCGACGCTAACTTACAAATTTGGTTACATGATTTTCAGAAAATTAAAATTTGTTCTTGATTTCTGGGTTACAATTAGTCCCATAGGTTTTATCCATCCATATAAGATTATTATGAAATTTATTGACAAGGAACTATATTTATT

mRNA sequence

ATGTTTGAGATTTCGGGGATTACTATCTTCAATCACTCATTCACCAACAAATTCATCAGCTTAGGGTTTTCATTTACAACACTTTCTTCATTTCAGAACCCTTTTCTCTTCCCTCTCAAATGGTGTGGGGCCCTACAAAGGGAAATAGAGATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCATCTGAACCGATCTTTTGCAGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGCAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGAAATCATCCTAGATCCCTGAATTGAACGCCGTGGGAGATTGAAACGGGAATCGACGAAGCTTTTTGAATTGAGATTTTGTAGATCGTAATAATGTTCTTTTGATGTTCATAATAATGTAATTGACGTAATTATAGATGTAAATCGATCAGAAGTTGAGTTGTTGCTGCAATTCGACGCTAACTTACAAATTTGGTTACATGATTTTCAGAAAATTAAAATTTGTTCTTGATTTCTGGGTTACAATTAGTCCCATAGGTTTTATCCATCCATATAAGATTATTATGAAATTTATTGACAAGGAACTATATTTATT

Coding sequence (CDS)

ATGTTTGAGATTTCGGGGATTACTATCTTCAATCACTCATTCACCAACAAATTCATCAGCTTAGGGTTTTCATTTACAACACTTTCTTCATTTCAGAACCCTTTTCTCTTCCCTCTCAAATGGTGTGGGGCCCTACAAAGGGAAATAGAGATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCATCTGAACCGATCTTTTGCAGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGCAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Protein sequence

MFEISGITIFNHSFTNKFISLGFSFTTLSSFQNPFLFPLKWCGALQREIEMVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Homology
BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
           AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match: A0A6J1GSM0 (uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC111457119 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.7e-47
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
           AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61  AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94

BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.0e-38
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1   MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
           AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match: A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.4e-37
Identity = 79/96 (82.29%), Postives = 86/96 (89.58%), Query Frame = 0

Query: 51  MVPTGKAPI--GGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNE 110
           M+PTG+API  GG GGCERLEQALRDCH+R+P+GPARRS C HLNRS AECLVAT CPNE
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 111 AEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
           AEAVRTLCS+ GTALKRSQC+QAKFS S CLSSLQL
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 109

BLAST of CmaCh18G005580 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-36
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
           AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

BLAST of CmaCh18G005580 vs. NCBI nr
Match: XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 2.5e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
           AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

BLAST of CmaCh18G005580 vs. NCBI nr
Match: XP_022955041.1 (uncharacterized protein LOC111457119 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 5.7e-47
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
           AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61  AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94

BLAST of CmaCh18G005580 vs. NCBI nr
Match: KAG6573459.1 (hypothetical protein SDJN03_27346, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012607.1 hypothetical protein SDJN02_25359, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           MVPTGKAPIGGDGGCERLE+ALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
           AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61  AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94

BLAST of CmaCh18G005580 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 8.2e-46
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 51  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 110
           MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60

Query: 111 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 145
           AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

BLAST of CmaCh18G005580 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 9.7e-39
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 0

Query: 50  EMVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEA 109
           EM+PTG A I GDGGCERLEQALR+CHKRLPEGPARRS C HLNRS AECLVAT CP+EA
Sbjct: 5   EMLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACPSEA 64

Query: 110 EAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
           EAVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 65  EAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 98

BLAST of CmaCh18G005580 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-31
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0

Query: 45  LQREIEMVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATV 104
           L RE+  + TGK        C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  
Sbjct: 14  LHREMRRIHTGKIREIPMKSCDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEA 73

Query: 105 CPNEAEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 144
           CP E+EAVR+LCSSGGT+LKR QCE A+ S SLCLS  Q
Sbjct: 74  CPEESEAVRSLCSSGGTSLKRKQCEYAQLSLSLCLSRHQ 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K2P51.2e-47100.00uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507... [more]
A0A6J1GSM02.7e-4798.94uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC1114571... [more]
A0A0A0LYC11.0e-3883.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1[more]
A0A6J1CN743.4e-3782.29uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A5D3CLT31.3e-3681.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_022994930.12.5e-47100.00uncharacterized protein LOC111490507 [Cucurbita maxima][more]
XP_022955041.15.7e-4798.94uncharacterized protein LOC111457119 [Cucurbita moschata][more]
KAG6573459.11.6e-4697.87hypothetical protein SDJN03_27346, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023542217.18.2e-4698.94uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo][more]
XP_038893663.19.7e-3987.23uncharacterized protein LOC120082530 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G31175.16.1e-3162.63unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G005580.1CmaCh18G005580.1mRNA