CmaCh17G012360 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G012360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	glycine-rich protein 5-like
Location	Cma_Chr17: 8481903 .. 8482226 (-)
RNA-Seq Expression	CmaCh17G012360
Synteny	CmaCh17G012360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGCTTATGGCTTTGTTTTTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTGGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAACTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

mRNA sequence

ATGGCCAAATTGCTTATGGCTTTGTTTTTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTGGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAACTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

Coding sequence (CDS)

ATGGCCAAATTGCTTATGGCTTTGTTTTTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTGGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAACTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

Protein sequence

MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAVGSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGLTNP

Homology

[Close]

BLAST of CmaCh17G012360 vs. ExPASy TrEMBL
Match: A0A6J1GPC7 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAVGSGGD 65
           MALFLALMATHALARPTPPDATFNDQKNFLTYGGIG YSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60

Query: 66  LGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGLTNP 108
           LGGGLGGPAGGIGGLGGLGGTGGGIGGG GSGLGGGSGLTNP
Sbjct: 61  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 102

[Close]

BLAST of CmaCh17G012360 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.0e-24
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GS---GGDLGGGLGGPAGGIGGLGGLGGTGGGIG--GGTGSGLGGGSG 104
           G    GG LGGGLGG  G  GGLGGLGGTGGG+G  GGT  GLGGG G
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLG 108

[Close]

BLAST of CmaCh17G012360 vs. ExPASy TrEMBL
Match: A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.8e-23
Identity = 79/103 (76.70%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL MA+ LAL+ATHALARPTP DATF DQKNFLTYGG+GGYSGIGSNGLPFGG+GGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSG 104
           G     G G GG  GGIGGLGG GG G G+GGG G GLGGG G
Sbjct: 61  G-----GTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLG 98

[Close]

BLAST of CmaCh17G012360 vs. ExPASy TrEMBL
Match: A0A0A0K9U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 83/132 (62.88%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+GGYSGIG+NGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GS-----------GGDLG---------GGLGGPAGGIGGLGGL-----GGTGGGIGGGTG 108
           G            GG LG         GGLGGP GG GG+GG      GG GGG+GGG G
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGGLGGGLGGGLGGGLG 120

[Close]

BLAST of CmaCh17G012360 vs. ExPASy TrEMBL
Match: A0A1S3CGR1 (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-22
Identity = 80/103 (77.67%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAVGS--- 65
           MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+G    
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  GGDLGGGLGGPAGGIGGLGGLGGTGGGIG--GGTGSGLGGGSG 104
           GG LGGGLGG  G  GGLGGLGGTGGG+G  GGT  GLGGG G
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLG 103

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: KAG6575963.1 (hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.0 bits (432), Expect = 5.5e-39
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKLLMALFLALM THALARPTPPDATFNDQKNFLTYGGIG YSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGLTNP 108
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGG GSGLGGGSGLTNP
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 107

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: XP_023549421.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIG YSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGLTNP 108
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGG G GLGGGSGLTNP
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGLTNP 107

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: XP_022953896.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAVGSGGD 65
           MALFLALMATHALARPTPPDATFNDQKNFLTYGGIG YSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60

Query: 66  LGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGLTNP 108
           LGGGLGGPAGGIGGLGGLGGTGGGIGGG GSGLGGGSGLTNP
Sbjct: 61  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 102

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: KAG7014487.1 (hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.0 bits (406), Expect = 5.7e-36
Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKLLMALFLALM THALARPTPPDATFNDQKNFLTYGGIG YSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGS 103
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGG GSGLGGGS
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGS 102

[Close]

BLAST of CmaCh17G012360 vs. NCBI nr
Match: KAA0050560.1 (acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GS---GGDLGGGLGGPAGGIGGLGGLGGTGGGIG--GGTGSGLGGGSG 104
           G    GG LGGGLGG  G  GGLGGLGGTGGG+G  GGT  GLGGG G
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLG 108

[Close]

BLAST of CmaCh17G012360 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 60/109 (55.05%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHAL---ARPTPPDATFNDQKNFLTYGGIGGYSGIGSNGLPFGGIG 60
           MAK    +FL      AL   AR  P     +DQKN+L YG  GGYSG+G NGLPFGG+G
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVP--VGLSDQKNYLGYG--GGYSGVGDNGLPFGGVG 60

Query: 61  GAV-GSGGDLG-GGLGGPAGGIGGLGGLGGTGGGIGGGTGSGLGGGSGL 105
           G V G GG+LG GG GG  GG+G     GG GGG G G G GLGGGSG+
Sbjct: 61  GGVSGPGGNLGYGGFGGAGGGLG-----GGLGGGAGSGLGGGLGGGSGI 100

[Close]

BLAST of CmaCh17G012360 vs. TAIR 10
Match: AT4G29020.1 (glycine-rich protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 56/120 (46.67%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MAKLLMALFL-ALMATHAL--ARPTPP---DATFNDQKNFLTYGGIGGYSGIGSN---GL 60
           MA   +A+FL ALM + A+   RP P     A  +DQKNF+ + G+GG +GIG     G 
Sbjct: 1   MAVRCLAVFLVALMVSQAVTATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGA 60

Query: 61  PFGGIGGAVGS------GGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGTG-SGLGGGSGL 105
             GG+ G VG        G +GGG+GG  GG+GGLGGLGG GGG G G G  G+GG  G+
Sbjct: 61  GLGGVAGGVGGVAGVLPVGGVGGGIGGLGGGVGGLGGLGGLGGGSGLGHGVGGIGGDPGI 120

[Close]

BLAST of CmaCh17G012360 vs. TAIR 10
Match: AT4G29020.2 (glycine-rich protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.7e-04
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1   MAKLLMALFL-ALMATHAL--ARPTPP---DATFNDQKNFLTYGGIGGYSGIGSNGLPFG 60
           MA   +A+FL ALM + A+   RP P     A  +DQKNF+ + G+GG +GIG  G    
Sbjct: 1   MAVRCLAVFLVALMVSQAVTATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGA 60

Query: 61  GIGGAVGSGGDLGGGL--GGPAGGIGGLGGLGGTG--GGIGGGTGSG 98
           G+GG  G  G + G L  GG  GGIGGLGG+GG G  GGIGGG+  G
Sbjct: 61  GLGGVAGGVGGVAGVLPVGGVGGGIGGLGGIGGVGGLGGIGGGSDCG 107

The following BLAST results are available for this feature:

BLAST of CmaCh17G012360 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPC7	1.1e-37	98.04	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 S...	[more]
A0A5A7U5T7	7.0e-24	77.78	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]
A0A6J1KVV3	7.8e-23	76.70	acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1	[more]
A0A0A0K9U1	3.0e-22	62.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1	[more]
A0A1S3CGR1	3.9e-22	77.67	acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1	[more]

BLAST of CmaCh17G012360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575963.1	5.5e-39	97.20	hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023549421.1	7.2e-39	97.20	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953896.1	2.3e-37	98.04	glycine-rich protein 5-like [Cucurbita moschata]	[more]
KAG7014487.1	5.7e-36	97.06	hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0050560.1	1.5e-23	77.78	acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-li...	[more]

BLAST of CmaCh17G012360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	1.7e-09	55.05	Putative membrane lipoprotein	[more]
AT4G29020.1	2.1e-04	46.67	glycine-rich protein	[more]
AT4G29020.2	4.7e-04	48.60	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..103
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..103
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 91..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012360.1	CmaCh17G012360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0005525	GTP binding