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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCATGTTCAATGTCTACAACTCGCTGTATGGTACAAATAAGGATGAAGAATACGTCAGTCGTTCTCTCTTGCTTGAAATCGATCCATTCAGATAGAAACTCAGAGTTAAGAGCACCTGGTTCAAAAAGAAAAGCTTCAATCAATCAACAATCACACAAGGAAAAGATTCATGGTGAAGGCAGAAAACAGAATGACCCAGCAACTTCTTCCCCTCAGGTATAATAAGGGTCACAGGAGCTCAATGTCCATTATCCTTTGACATACTGACATATAATGAAAGATTTTTTGAACATATTGCCTAATGGGTAAATTTTGTGGCCATGATTTGAGCCTTTCATTGAGATTATCTGCAAATATTCAGTTCAGCACGTGTACTGCTTCACTAGAACATGACCTCTTTTGTTTTCTACTCTCTGTTCCTTGATATGAAAGAGTGGAGAATATTTCCTCTGTTCCTAATGATCTACAATTTAGGTTTAAATTTAGATTTCATGAACTTCTATAAGATCTGTTCTGTCTCTGAATTTTTTTTTAATAATCATTTTGATTTTTACGATTATTTTGTCATAAATTATTTAATAGGCAAGTAACGTCGAAGCCCGAGGTATGGTTGATGTGACCAAGAGCTCGCATGGAAGTATGAGGTATGTAAGGTATATTAAATTGTTTTAAAATTTATATGATTTAAATTACAATATTGTGTTAAACCTAGATGTTTTTATATTTTGATAGGAAAAAATTCAAAAACTAAAATTAATATTTTTTTTTAATTTTAATGAGTGTTATTTTTTAATCTCATTTATGAAATTGAATGTTTTTATTATATGAAATCTGTATTTTATAAAAATAGTGATAATAATATGAATGTGGACATAAATTATTATAAAGAAAAAATAAAAGATACCATTTATGTAACAAGGCTTGATTAGATATAAAGGCAAAATTGTTGCCATAAATAAAAACAAAAACTTAATACTATAATTTTAATTTAATTAGACTAAGGTAATAATACATGATTGACTTGACTGACCATAATGAATTAAAATTCAATCTTTGTATCATAGGCTTTCACTTCTTTTTAGAAATAGCATTTTTTTTATGACCAAATTGGACATAATAATACCAAACCCAATTAATAATAATAATAATAATAATAATAATAATATGATAAAAGACAAAATGGCCTCAAAATTCAACCATAAATAATTGTTTTAACTAGACATGGATCAAACAAAAATCTTTCACAATCTATTTTAGAACTATTTTATTCTTACAAAAATATATTTATTTTTTGTGTTTTTAATAAAGAAATATTCTTGAATCCAACTTTACCCCTATTGTAAATTTACAACAGTTATAGGGTATTTTTGGTATGTGTTTATGATTCGGTTTATTATGGCTCCTTTCATAATTAGATAGCCAAAAATATATTTTTGTTCTCAAAATAAACAAAATAAATAAATAAATAAATAAATGAGGGGTTAAATTGGGAATAAGAAGTGAATCCTTTCCATTTTACAAAATAAAAACATTAGGAAAAGACTAATATACTCAACGGTTTATGGACCCATTGGGTCCCACGCACTGTCAGTCAGTCACCGACTACCAATGCACTGTGATTTTCTCTTCTCCTCACCCATTGCGTAAGTTAGCAAATGCTATTTTTTTAAGCTAAATAAATAAATAGAAAAAGCAAAAAGTTCTTTTTTTTTAAAAAAAAAGCGCAACAGTCAAAACTGCACTTTGAGCTACGTGTCAGCCCTTCAAAGCTGAAAGTATTACACGTGGCAAATTCTGATTGGGTCGCTTTTACAAATTGCTACTCTCTTCATTTCCTCGTGCCCAATTTCGTGGGCCCCACTCTTGGTGGGCGTTTTTTTATTGTTTTTTATATAAAAAGTATTATTATTATTTAATCAATTTTAAATGTTTGAATCTAAAATTTATAAAAAGTAAAATGTAAAGACTAAAATCAACTCATTATTAATTTGGTTAAATTCTTAAATTATAATTTATAAATTTTATATTTATTTCATTTCCCCAGATTTCAGAATGTATTTTAA mRNA sequence ATGTCATGTTCAATGTCTACAACTCGCTGTATGGTACAAATAAGGATGAAGAATACGTCAGTCGTTCTCTCTTGCTTGAAATCGATCCATTCAGATAGAAACTCAGAGTTAAGAGCACCTGGTTCAAAAAGAAAAGCTTCAATCAATCAACAATCACACAAGGAAAAGATTCATGGTGAAGGCAGAAAACAGAATGACCCAGCAACTTCTTCCCCTCAGGCAAGTAACGTCGAAGCCCGAGGTATGGTTGATGTGACCAAGAGCTCGCATGGAAGTATGAGACTAAGATTTCAGAATGTATTTTAA Coding sequence (CDS) ATGTCATGTTCAATGTCTACAACTCGCTGTATGGTACAAATAAGGATGAAGAATACGTCAGTCGTTCTCTCTTGCTTGAAATCGATCCATTCAGATAGAAACTCAGAGTTAAGAGCACCTGGTTCAAAAAGAAAAGCTTCAATCAATCAACAATCACACAAGGAAAAGATTCATGGTGAAGGCAGAAAACAGAATGACCCAGCAACTTCTTCCCCTCAGGCAAGTAACGTCGAAGCCCGAGGTATGGTTGATGTGACCAAGAGCTCGCATGGAAGTATGAGACTAAGATTTCAGAATGTATTTTAA Protein sequence MSCSMSTTRCMVQIRMKNTSVVLSCLKSIHSDRNSELRAPGSKRKASINQQSHKEKIHGEGRKQNDPATSSPQASNVEARGMVDVTKSSHGSMRLRFQNVF
Homology
BLAST of CmaCh17G012200 vs. NCBI nr
Match: KAG6575949.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 91.3 bits (225), Expect = 5.2e-15 Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 0 Query: 20 SVVLSCLKSIHSDRNSELRAPGSKRKASINQQSHKEKIHGEGRKQNDPATSSPQASNVEA 79 ++VL KSIHS+RN ELRAPG KRKASINQQSHKEKI GE RKQNDPATSSPQ +NVEA Sbjct: 666 ALVLEVSKSIHSNRNLELRAPGLKRKASINQQSHKEKIQGEDRKQNDPATSSPQVNNVEA 725
Query: 80 RGMVD 85 R ++ Sbjct: 726 RRYIN 730
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6575949.1 | 5.2e-15 | 75.38 | Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 32..101 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..63 |
Relationships
The following mRNA feature(s) are a part of this gene:
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