CmaCh17G004860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G004860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	agamous-like MADS-box protein AGL62
Location	Cma_Chr17: 3016126 .. 3016575 (+)
RNA-Seq Expression	CmaCh17G004860
Synteny	CmaCh17G004860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGCTTTGCGGAGCAGAGGTTGCCAGCATTGCCTTCTCTCCAAACGATAAGGTTTTTTGTTTTGGTCATCCGAATGTTGACATGCTTTTGGATCGGTATCTGACTCGAAATTTGTCGCCGCCGAAGCCGGCCGAGAATTTTGTTCCTGTAACGGAGTTTAATCGCGATTTCGCCGATTTAGTGTCTAAGTTTGAAGTGGCGAAGAAGCGAGCAGAAGAATTAACTCACGTGTCGGAGAAATCGAGAAATAACGGCGAATTTTGGCGGGAGGAGGCGATAGAAAGGATGAGATTAGAGGAATGGAAGGAGTTCCGATTGTCATTCATGGATTCGAGAGCTAAAGTGGCAAAGAAAGTCGAGAAAATGATCCGAGGGCCTCTGTTGCCATCGTCGTTTCACCTAGCCAAGAACCACCACGTCGCGACAAGGTTAGGGTTTTTCTAG

mRNA sequence

ATGGCTGTGCTTTGCGGAGCAGAGGTTGCCAGCATTGCCTTCTCTCCAAACGATAAGGTTTTTTGTTTTGGTCATCCGAATGTTGACATGCTTTTGGATCGGTATCTGACTCGAAATTTGTCGCCGCCGAAGCCGGCCGAGAATTTTGTTCCTGTAACGGAGTTTAATCGCGATTTCGCCGATTTAGTGTCTAAGTTTGAAGTGGCGAAGAAGCGAGCAGAAGAATTAACTCACGTGTCGGAGAAATCGAGAAATAACGGCGAATTTTGGCGGGAGGAGGCGATAGAAAGGATGAGATTAGAGGAATGGAAGGAGTTCCGATTGTCATTCATGGATTCGAGAGCTAAAGTGGCAAAGAAAGTCGAGAAAATGATCCGAGGGCCTCTGTTGCCATCGTCGTTTCACCTAGCCAAGAACCACCACGTCGCGACAAGGTTAGGGTTTTTCTAG

Coding sequence (CDS)

ATGGCTGTGCTTTGCGGAGCAGAGGTTGCCAGCATTGCCTTCTCTCCAAACGATAAGGTTTTTTGTTTTGGTCATCCGAATGTTGACATGCTTTTGGATCGGTATCTGACTCGAAATTTGTCGCCGCCGAAGCCGGCCGAGAATTTTGTTCCTGTAACGGAGTTTAATCGCGATTTCGCCGATTTAGTGTCTAAGTTTGAAGTGGCGAAGAAGCGAGCAGAAGAATTAACTCACGTGTCGGAGAAATCGAGAAATAACGGCGAATTTTGGCGGGAGGAGGCGATAGAAAGGATGAGATTAGAGGAATGGAAGGAGTTCCGATTGTCATTCATGGATTCGAGAGCTAAAGTGGCAAAGAAAGTCGAGAAAATGATCCGAGGGCCTCTGTTGCCATCGTCGTTTCACCTAGCCAAGAACCACCACGTCGCGACAAGGTTAGGGTTTTTCTAG

Protein sequence

MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKNHHVATRLGFF

Homology

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BLAST of CmaCh17G004860 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENF--------VPV 60
           +  LCGAEVA + FSP  KVF FGHPNVD ++DR++  N  PP    N           V
Sbjct: 40  LCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIV 99

Query: 61  TEFNRDFADLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFR 108
            + N     ++S+ E  KK+ +EL  + EK++  G +W E+ +E + L + + F+
Sbjct: 100 QDLNNHLTQVLSQLETEKKKYDELKKIREKTKALGNWW-EDPVEELALSQLEGFK 153

[Close]

BLAST of CmaCh17G004860 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-10
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENF----VPVTEFN 60
           +  LCGAE+  I FSP  K F FGHP+V+ +LDRY++RN      ++          E N
Sbjct: 96  LCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELN 155

Query: 61  RDFADLVSKFEVAKKRAEELTHVSEKS-RNNGEFWREEAIERMRLEEWKEFRLSFMDSRA 118
                ++S+ E  KK+ + +  + ++S R +   W E+ +E M + + +E + +  + R 
Sbjct: 156 MQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRK 215

[Close]

BLAST of CmaCh17G004860 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 30/97 (30.93%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 4   LCGAEVASIAFSPNDKVFCFGHPNVDMLLDRY----LTRNLSPPKPAENFVPVTEFNRDF 63
           LC A++A I FSP  KVF FGHPNVD+LLD +    +  N +    +   + V   N+ +
Sbjct: 43  LCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSY 102

Query: 64  ADLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIE 97
            ++ ++ E  +K  +       ++ N  E+W +  +E
Sbjct: 103 TEVKAEVEKEQKNKQSRAQNERENENAEEWWSKSPLE 139

[Close]

BLAST of CmaCh17G004860 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.8e-06
Identity = 34/147 (23.13%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLD----RYLTRNLSPPKPAENFVPVTEFN 60
           +  LC AE+A I FSP+ K + FGHPNV+ LLD    R +  N +    +   + +   N
Sbjct: 40  LCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLN 99

Query: 61  RDFADLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAK 120
               +++++ E  ++  + +     ++++  ++WR    E + L +    +      + +
Sbjct: 100 ESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSPTE-LNLAQSTSMKCDLEALKKE 159

Query: 121 VAKKVEKMIRGPLLPSSFHLAKNHHVA 144
           V +KV ++    L   +F++  + +VA
Sbjct: 160 VDEKVAQLHHRNL---NFYVGSSSNVA 182

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BLAST of CmaCh17G004860 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.5e-05
Identity = 32/112 (28.57%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTR----NLSPPKPAENFVPVTEFN 60
           +A LC AE+  + FSP  K F +G PN+D + +R++      +    + + N+ P  +  
Sbjct: 35  LATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRL 94

Query: 61  RDFADLVS-KFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFR 108
            +  DL++ + E  K+R E+     EK  + G+   +E+IE + L+E  E++
Sbjct: 95  SERLDLLNQEVEAEKERGEK---SQEKLESAGDERFKESIETLTLDELNEYK 143

[Close]

BLAST of CmaCh17G004860 vs. ExPASy TrEMBL
Match: A0A6J1L0Z5 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111498897 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFA 60
           MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLS PKPAENFVPVTEFNRDFA
Sbjct: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSSPKPAENFVPVTEFNRDFA 60

Query: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120
           DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK
Sbjct: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120

Query: 121 VEKMIRGPLLPSSFHLAKNHHVATRLGFF 150
           VEKMIRGPLLPSSFHLAKNHH  TRLGFF
Sbjct: 121 VEKMIRGPLLPSSFHLAKNHH--TRLGFF 147

[Close]

BLAST of CmaCh17G004860 vs. ExPASy TrEMBL
Match: A0A6J1IH57 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111472920 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 20  VFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 79
           VFCFGHPNVD+ LDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV
Sbjct: 26  VFCFGHPNVDVPLDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 85

Query: 80  SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 139
           SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN
Sbjct: 86  SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 145

Query: 140 HHVATRLGFF 150
           H+VATRLGFF
Sbjct: 146 HYVATRLGFF 155

[Close]

BLAST of CmaCh17G004860 vs. ExPASy TrEMBL
Match: A0A6J1ILG9 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111476032 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.5e-60
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 20  VFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 79
           VFCFGHPNVD+LLDRYLTRNLS PKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV
Sbjct: 34  VFCFGHPNVDVLLDRYLTRNLSSPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 93

Query: 80  SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 139
           SEKSRNNG FWREEAIE MRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN
Sbjct: 94  SEKSRNNGGFWREEAIEGMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 153

Query: 140 HH 142
           HH
Sbjct: 154 HH 155

[Close]

BLAST of CmaCh17G004860 vs. ExPASy TrEMBL
Match: A0A6J1KVC9 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 117/164 (71.34%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFA 60
           ++VLCGAEVA I FSPNDKVFCFGHPNVD+LLDRYLT NLSPPKPAE++VPV EFNRDFA
Sbjct: 51  LSVLCGAEVAIIVFSPNDKVFCFGHPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 110

Query: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120
           DLV +FE  KKRAEEL   SE+SRN+G FW EEA+E MRLEE KEFR S MD RAKVA+K
Sbjct: 111 DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRLEELKEFRSSLMDLRAKVAEK 170

Query: 121 VEKM----IRGPLLPS-----------SFHLAKNHHVATRLGFF 150
           VEK+    I GPLLP+           SFHLA NHHVAT LGFF
Sbjct: 171 VEKLTAVRIGGPLLPALPPPPPPMMPPSFHLAGNHHVATGLGFF 214

[Close]

BLAST of CmaCh17G004860 vs. ExPASy TrEMBL
Match: A0A6J1H4M6 (agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC111460353 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 116/166 (69.88%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFA 60
           ++VLCGAEVA I FSPNDKVFCFGHP+VD+LLDRYLT NLSPPKPAE++VPV EFNRDFA
Sbjct: 51  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 110

Query: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120
           DLV +FE  KKRAEEL   SE+SRN+G FW EEA+E MRLEE KEFR S MD RAKVA+K
Sbjct: 111 DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRLEELKEFRSSLMDLRAKVAEK 170

Query: 121 VEKM----IRGPLLPS-------------SFHLAKNHHVATRLGFF 150
           VEK+    I GPLLP+             SFHLA NHHVAT LGFF
Sbjct: 171 VEKLTAVRIGGPLLPALPPPPPTQPMTPPSFHLAGNHHVATGLGFF 216

[Close]

BLAST of CmaCh17G004860 vs. NCBI nr
Match: XP_023006019.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 291.2 bits (744), Expect = 5.1e-75
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFA 60
           MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLS PKPAENFVPVTEFNRDFA
Sbjct: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSSPKPAENFVPVTEFNRDFA 60

Query: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120
           DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK
Sbjct: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120

Query: 121 VEKMIRGPLLPSSFHLAKNHHVATRLGFF 150
           VEKMIRGPLLPSSFHLAKNHH  TRLGFF
Sbjct: 121 VEKMIRGPLLPSSFHLAKNHH--TRLGFF 147

[Close]

BLAST of CmaCh17G004860 vs. NCBI nr
Match: XP_022974284.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 2.8e-65
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 20  VFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 79
           VFCFGHPNVD+ LDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV
Sbjct: 26  VFCFGHPNVDVPLDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 85

Query: 80  SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 139
           SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN
Sbjct: 86  SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 145

Query: 140 HHVATRLGFF 150
           H+VATRLGFF
Sbjct: 146 HYVATRLGFF 155

[Close]

BLAST of CmaCh17G004860 vs. NCBI nr
Match: XP_022975744.1 (agamous-like MADS-box protein AGL62, partial [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-59
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 20  VFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 79
           VFCFGHPNVD+LLDRYLTRNLS PKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV
Sbjct: 34  VFCFGHPNVDVLLDRYLTRNLSSPKPAENFVPVTEFNRDFADLVSKFEVAKKRAEELTHV 93

Query: 80  SEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 139
           SEKSRNNG FWREEAIE MRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN
Sbjct: 94  SEKSRNNGGFWREEAIEGMRLEEWKEFRLSFMDSRAKVAKKVEKMIRGPLLPSSFHLAKN 153

Query: 140 HH 142
           HH
Sbjct: 154 HH 155

[Close]

BLAST of CmaCh17G004860 vs. NCBI nr
Match: XP_023006252.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 117/164 (71.34%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFA 60
           ++VLCGAEVA I FSPNDKVFCFGHPNVD+LLDRYLT NLSPPKPAE++VPV EFNRDFA
Sbjct: 51  LSVLCGAEVAIIVFSPNDKVFCFGHPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 110

Query: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120
           DLV +FE  KKRAEEL   SE+SRN+G FW EEA+E MRLEE KEFR S MD RAKVA+K
Sbjct: 111 DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRLEELKEFRSSLMDLRAKVAEK 170

Query: 121 VEKM----IRGPLLPS-----------SFHLAKNHHVATRLGFF 150
           VEK+    I GPLLP+           SFHLA NHHVAT LGFF
Sbjct: 171 VEKLTAVRIGGPLLPALPPPPPPMMPPSFHLAGNHHVATGLGFF 214

[Close]

BLAST of CmaCh17G004860 vs. NCBI nr
Match: XP_023549141.1 (agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 116/166 (69.88%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENFVPVTEFNRDFA 60
           ++VLCGAEVA I FSPNDKVFCFGHP+VD+LLDRYLT NLSPPKPAE++VPV EFNRDFA
Sbjct: 39  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 98

Query: 61  DLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAKVAKK 120
           DLV +FE  KKRAEEL   SE+SRN+G FW EEA+E MRLEE KEFR S MD RAKVA+K
Sbjct: 99  DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRLEELKEFRSSLMDLRAKVAEK 158

Query: 121 VEKM----IRGPLLPS-------------SFHLAKNHHVATRLGFF 150
           VEK+    I GPLLP+             SFHLA NHHVAT LGFF
Sbjct: 159 VEKLTAVRIGGPLLPALPPPPPPQPMTPPSFHLAGNHHVATGLGFF 204

[Close]

BLAST of CmaCh17G004860 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-16
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENF--------VPV 60
           +  LCGAEVA + FSP  KVF FGHPNVD ++DR++  N  PP    N           V
Sbjct: 40  LCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIV 99

Query: 61  TEFNRDFADLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFR 108
            + N     ++S+ E  KK+ +EL  + EK++  G +W E+ +E + L + + F+
Sbjct: 100 QDLNNHLTQVLSQLETEKKKYDELKKIREKTKALGNWW-EDPVEELALSQLEGFK 153

[Close]

BLAST of CmaCh17G004860 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-11
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTRNLSPPKPAENF----VPVTEFN 60
           +  LCGAE+  I FSP  K F FGHP+V+ +LDRY++RN      ++          E N
Sbjct: 96  LCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELN 155

Query: 61  RDFADLVSKFEVAKKRAEELTHVSEKS-RNNGEFWREEAIERMRLEEWKEFRLSFMDSRA 118
                ++S+ E  KK+ + +  + ++S R +   W E+ +E M + + +E + +  + R 
Sbjct: 156 MQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRK 215

[Close]

BLAST of CmaCh17G004860 vs. TAIR 10
Match: AT1G65360.1 (AGAMOUS-like 23 )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 30/97 (30.93%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 4   LCGAEVASIAFSPNDKVFCFGHPNVDMLLDRY----LTRNLSPPKPAENFVPVTEFNRDF 63
           LC A++A I FSP  KVF FGHPNVD+LLD +    +  N +    +   + V   N+ +
Sbjct: 43  LCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSY 102

Query: 64  ADLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIE 97
            ++ ++ E  +K  +       ++ N  E+W +  +E
Sbjct: 103 TEVKAEVEKEQKNKQSRAQNERENENAEEWWSKSPLE 139

[Close]

BLAST of CmaCh17G004860 vs. TAIR 10
Match: AT1G01530.1 (AGAMOUS-like 28 )

HSP 1 Score: 52.0 bits (123), Expect = 4.8e-07
Identity = 34/147 (23.13%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLD----RYLTRNLSPPKPAENFVPVTEFN 60
           +  LC AE+A I FSP+ K + FGHPNV+ LLD    R +  N +    +   + +   N
Sbjct: 40  LCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLN 99

Query: 61  RDFADLVSKFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFRLSFMDSRAK 120
               +++++ E  ++  + +     ++++  ++WR    E + L +    +      + +
Sbjct: 100 ESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSPTE-LNLAQSTSMKCDLEALKKE 159

Query: 121 VAKKVEKMIRGPLLPSSFHLAKNHHVA 144
           V +KV ++    L   +F++  + +VA
Sbjct: 160 VDEKVAQLHHRNL---NFYVGSSSNVA 182

[Close]

BLAST of CmaCh17G004860 vs. TAIR 10
Match: AT2G34440.1 (AGAMOUS-like 29 )

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06
Identity = 32/112 (28.57%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   MAVLCGAEVASIAFSPNDKVFCFGHPNVDMLLDRYLTR----NLSPPKPAENFVPVTEFN 60
           +A LC AE+  + FSP  K F +G PN+D + +R++      +    + + N+ P  +  
Sbjct: 35  LATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRL 94

Query: 61  RDFADLVS-KFEVAKKRAEELTHVSEKSRNNGEFWREEAIERMRLEEWKEFR 108
            +  DL++ + E  K+R E+     EK  + G+   +E+IE + L+E  E++
Sbjct: 95  SERLDLLNQEVEAEKERGEK---SQEKLESAGDERFKESIETLTLDELNEYK 143

The following BLAST results are available for this feature:

BLAST of CmaCh17G004860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	1.0e-14	36.52	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	7.8e-10	30.33	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
O80807	2.1e-07	30.93	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]
Q9LMM8	6.8e-06	23.13	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
O64703	7.5e-05	28.57	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]

BLAST of CmaCh17G004860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0Z5	2.5e-75	97.99	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111498897 ...	[more]
A0A6J1IH57	1.4e-65	97.69	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111472920 ...	[more]
A0A6J1ILG9	6.5e-60	96.72	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111476032 ...	[more]
A0A6J1KVC9	1.1e-54	71.34	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 ...	[more]
A0A6J1H4M6	7.0e-54	69.88	agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC11146035...	[more]

BLAST of CmaCh17G004860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006019.1	5.1e-75	97.99	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]
XP_022974284.1	2.8e-65	97.69	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]
XP_022975744.1	1.3e-59	96.72	agamous-like MADS-box protein AGL62, partial [Cucurbita maxima]	[more]
XP_023006252.1	2.2e-54	71.34	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]
XP_023549141.1	1.4e-53	69.88	agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh17G004860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	7.4e-16	36.52	AGAMOUS-like 62	[more]
AT2G24840.1	5.5e-11	30.33	AGAMOUS-like 61	[more]
AT1G65360.1	1.5e-08	30.93	AGAMOUS-like 23	[more]
AT1G01530.1	4.8e-07	23.13	AGAMOUS-like 28	[more]
AT2G34440.1	5.3e-06	28.57	AGAMOUS-like 29	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 1..46 e-value: 5.0E-10 score: 41.1
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..39
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 2..23 e-value: 8.6E-5 score: 22.0
None	No IPR available	PANTHER	PTHR11945:SF591	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	coord: 2..126
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G004860.1	CmaCh17G004860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding