Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGGTACCTTACCTCTCTTTGTCTGATTGTATTTCCATTTCTTTAAGTTCATTGACTTTTGTTCGGTTTCAATGGATTATCTTTGTGTTAGCTTCCATTAAGCTTCCGGAATTTCCATAATTTTGCCCCAGTATGCTAGAGAGTCGGCGTGCGTGAAATTTGTTGATGATGTTTGCTTTGATGTTGTCGTATTTCAAGCTTCAAGTTACGTAGAACATGTATTTTGATTGTTACCAAAGAAATGACTCAACAATTGCTTTTGCAATGCGCAGTCTAGTAGTGCTTATGTCTATTAGTTCTAGTTTCAAATTACTTCATGGTTATTGATGGCTACTCAGTACCACCCCATTGTTATCAGCCCTGCATTATGCCTATTCAGTTTCCTCTAATTCCAAAACGCTCTAAACAAATATTAATTTTCAATTTTTTGCTTAGTCAAAAGTGAGGGCTATGAAGAGAAATGCATTACCATATTTGGATATTGCAGCAATAAGATGGCTTCATTCTTTTCCTTCCAATTGAATCAAAACAATACTTAAGATAGAATAAGTGATTAATGTGTTTCAAGTATTATGTTATACTTAATCATGGAACTCTAGTATGACATGAATATGTGGCTTATTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGTTTGTGCTAAATTAAAGATTGTTTTTCAATTAATTTTGATAATTTCTTCCTTAGTTTTTGAAAAATTAACATTAGTCTAGTTTGTTTGTCCTAAATTTCATGGTTTTATTGGCAGCATCTTAATGCTCAGTTGGTATTGGTTTTTTACTTCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACCCACCCACACTATGATACATAACAAGGCTGGAAGCTTCAAAACATTGTGTATTTTTATGGCTGAATTTTGCTGTAATTGCTATTATTCATTGCTTCTTTTCATATGAGCTGCTGAAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC
mRNA sequence
ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC
Coding sequence (CDS)
ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAA
Protein sequence
MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRSYFQGDCCKIWA
Homology
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match:
A0A6J1E9N7 (uncharacterized protein LOC111430649 OS=Cucurbita moschata OX=3662 GN=LOC111430649 PE=4 SV=1)
HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRREIRESDSNRHRSRFDGEPS + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREIRESDSNRHRSRFDGEPS---------PKRSRRDRKTLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKHGLQHEGQDMIPHECSS LDSKPEYGVSKG NRNSDRRD GTKHS+NPTEVPRSRS
Sbjct: 61 RDQKHGLQHEGQDMIPHECSSPLDSKPEYGVSKGANRNSDRRDRGTKHSVNPTEVPRSRS 114
Query: 121 YFQ 124
Y Q
Sbjct: 121 YLQ 114
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match:
A0A6J1FPJ0 (pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 86/125 (68.80%), Postives = 94/125 (75.20%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRRE RESDS R+RSRFD EPS + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREARESDSKRYRSRFDKEPS---------PKRSRRDRKPLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKH L+HEGQD PHE S ALDS PE GVSKG NRNSD R+GGTK S+NPTEVPRSRS
Sbjct: 61 RDQKHELRHEGQDATPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRS 116
Query: 121 YFQGD 126
YFQ D
Sbjct: 121 YFQHD 116
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match:
A0A6J1FQX4 (pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 86/125 (68.80%), Postives = 94/125 (75.20%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRRE RESDS R+RSRFD EPS + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREARESDSKRYRSRFDKEPS---------PKRSRRDRKPLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKH L+HEGQD PHE S ALDS PE GVSKG NRNSD R+GGTK S+NPTEVPRSRS
Sbjct: 61 RDQKHELRHEGQDATPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRS 116
Query: 121 YFQGD 126
YFQ D
Sbjct: 121 YFQHD 116
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match:
A0A6J1JAV5 (pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 85/125 (68.00%), Postives = 95/125 (76.00%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRRE RESDS R+RSRFD EPS + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREARESDSKRYRSRFDREPS---------PKRSRRDRKPLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKH L+HEGQD+ PHE S ALDS PE GVSKG NRNSD R+GGTK ++NPTEVPRSRS
Sbjct: 61 RDQKHELRHEGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRALNPTEVPRSRS 116
Query: 121 YFQGD 126
YFQ D
Sbjct: 121 YFQHD 116
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match:
A0A6J1J5K1 (pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 85/125 (68.00%), Postives = 95/125 (76.00%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRRE RESDS R+RSRFD EPS + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREARESDSKRYRSRFDREPS---------PKRSRRDRKPLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKH L+HEGQD+ PHE S ALDS PE GVSKG NRNSD R+GGTK ++NPTEVPRSRS
Sbjct: 61 RDQKHELRHEGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRALNPTEVPRSRS 116
Query: 121 YFQGD 126
YFQ D
Sbjct: 121 YFQHD 116
BLAST of CmaCh16G003160 vs. NCBI nr
Match:
KAG6576912.1 (hypothetical protein SDJN03_24486, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 187.2 bits (474), Expect = 9.1e-44
Identity = 99/125 (79.20%), Postives = 104/125 (83.20%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRREIR+SDSN HRSRFDGE S + + + + EKLSRNSSSHVEDNKD
Sbjct: 240 MSRREIRKSDSNLHRSRFDGESS---------PKRSRRDRKTLEEKLSRNSSSHVEDNKD 299
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKG NRNSDRRDGGTKHSMNPTEVPRSRS
Sbjct: 300 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRS 355
Query: 121 YFQGD 126
YFQ D
Sbjct: 360 YFQHD 355
BLAST of CmaCh16G003160 vs. NCBI nr
Match:
XP_022922750.1 (uncharacterized protein LOC111430649 [Cucurbita moschata])
HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43
Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRREIRESDSNRHRSRFDGEPS + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREIRESDSNRHRSRFDGEPS---------PKRSRRDRKTLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKHGLQHEGQDMIPHECSS LDSKPEYGVSKG NRNSDRRD GTKHS+NPTEVPRSRS
Sbjct: 61 RDQKHGLQHEGQDMIPHECSSPLDSKPEYGVSKGANRNSDRRDRGTKHSVNPTEVPRSRS 114
Query: 121 YFQ 124
Y Q
Sbjct: 121 YLQ 114
BLAST of CmaCh16G003160 vs. NCBI nr
Match:
XP_023521658.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 184.5 bits (467), Expect = 5.9e-43
Identity = 98/123 (79.67%), Postives = 102/123 (82.93%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRREIRESDSNRHRSRFDGE S + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREIRESDSNRHRSRFDGESS---------PKRSRRDRKTLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKG NRNSDRRD TKHSMNPTEVPRSRS
Sbjct: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGANRNSDRRDRRTKHSMNPTEVPRSRS 114
Query: 121 YFQ 124
YFQ
Sbjct: 121 YFQ 114
BLAST of CmaCh16G003160 vs. NCBI nr
Match:
XP_023521659.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 164.1 bits (414), Expect = 8.2e-37
Identity = 89/125 (71.20%), Postives = 97/125 (77.60%), Query Frame = 0
Query: 1 MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
MSRREIRESDSNRHRSRFDGE S + + + + EKLSRNSSSHVEDNKD
Sbjct: 1 MSRREIRESDSNRHRSRFDGESS---------PKRSRRDRKTLEEKLSRNSSSHVEDNKD 60
Query: 61 RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
RDQKH L+HEGQD+ PHE S ALDS PE GVSKG NRNSD R+GGTK S+NPTEVPRSRS
Sbjct: 61 RDQKHELRHEGQDVTPHESSLALDSHPEGGVSKGANRNSDEREGGTKRSLNPTEVPRSRS 116
Query: 121 YFQGD 126
YFQ D
Sbjct: 121 YFQHD 116
BLAST of CmaCh16G003160 vs. NCBI nr
Match:
KAG7014939.1 (hypothetical protein SDJN02_22570, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 158.7 bits (400), Expect = 3.5e-35
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0
Query: 43 IREKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRR 102
+ EKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKG NRNSDRR
Sbjct: 26 LEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGENRNSDRR 85
Query: 103 DGGTKHSMNPTEVPRSRSYFQGD 126
DGGTKHSMNPTEVPRSRS FQ D
Sbjct: 86 DGGTKHSMNPTEVPRSRSCFQHD 108
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E9N7 | 2.2e-43 | 78.86 | uncharacterized protein LOC111430649 OS=Cucurbita moschata OX=3662 GN=LOC1114306... | [more] |
A0A6J1FPJ0 | 1.1e-34 | 68.80 | pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=... | [more] |
A0A6J1FQX4 | 1.1e-34 | 68.80 | pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=... | [more] |
A0A6J1JAV5 | 1.4e-34 | 68.00 | pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
A0A6J1J5K1 | 1.4e-34 | 68.00 | pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
Match Name | E-value | Identity | Description | |
KAG6576912.1 | 9.1e-44 | 79.20 | hypothetical protein SDJN03_24486, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022922750.1 | 4.5e-43 | 78.86 | uncharacterized protein LOC111430649 [Cucurbita moschata] | [more] |
XP_023521658.1 | 5.9e-43 | 79.67 | pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] | [more] |
XP_023521659.1 | 8.2e-37 | 71.20 | pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] | [more] |
KAG7014939.1 | 3.5e-35 | 93.98 | hypothetical protein SDJN02_22570, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |