CmaCh16G003160 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGGTACCTTACCTCTCTTTGTCTGATTGTATTTCCATTTCTTTAAGTTCATTGACTTTTGTTCGGTTTCAATGGATTATCTTTGTGTTAGCTTCCATTAAGCTTCCGGAATTTCCATAATTTTGCCCCAGTATGCTAGAGAGTCGGCGTGCGTGAAATTTGTTGATGATGTTTGCTTTGATGTTGTCGTATTTCAAGCTTCAAGTTACGTAGAACATGTATTTTGATTGTTACCAAAGAAATGACTCAACAATTGCTTTTGCAATGCGCAGTCTAGTAGTGCTTATGTCTATTAGTTCTAGTTTCAAATTACTTCATGGTTATTGATGGCTACTCAGTACCACCCCATTGTTATCAGCCCTGCATTATGCCTATTCAGTTTCCTCTAATTCCAAAACGCTCTAAACAAATATTAATTTTCAATTTTTTGCTTAGTCAAAAGTGAGGGCTATGAAGAGAAATGCATTACCATATTTGGATATTGCAGCAATAAGATGGCTTCATTCTTTTCCTTCCAATTGAATCAAAACAATACTTAAGATAGAATAAGTGATTAATGTGTTTCAAGTATTATGTTATACTTAATCATGGAACTCTAGTATGACATGAATATGTGGCTTATTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGTTTGTGCTAAATTAAAGATTGTTTTTCAATTAATTTTGATAATTTCTTCCTTAGTTTTTGAAAAATTAACATTAGTCTAGTTTGTTTGTCCTAAATTTCATGGTTTTATTGGCAGCATCTTAATGCTCAGTTGGTATTGGTTTTTTACTTCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACCCACCCACACTATGATACATAACAAGGCTGGAAGCTTCAAAACATTGTGTATTTTTATGGCTGAATTTTGCTGTAATTGCTATTATTCATTGCTTCTTTTCATATGAGCTGCTGAAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAA MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRSYFQGDCCKIWA Homology
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match: A0A6J1E9N7 (uncharacterized protein LOC111430649 OS=Cucurbita moschata OX=3662 GN=LOC111430649 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43 Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 0
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match: A0A6J1FPJ0 (pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34 Identity = 86/125 (68.80%), Postives = 94/125 (75.20%), Query Frame = 0
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match: A0A6J1FQX4 (pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34 Identity = 86/125 (68.80%), Postives = 94/125 (75.20%), Query Frame = 0
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match: A0A6J1JAV5 (pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34 Identity = 85/125 (68.00%), Postives = 95/125 (76.00%), Query Frame = 0
BLAST of CmaCh16G003160 vs. ExPASy TrEMBL
Match: A0A6J1J5K1 (pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34 Identity = 85/125 (68.00%), Postives = 95/125 (76.00%), Query Frame = 0
BLAST of CmaCh16G003160 vs. NCBI nr
Match: KAG6576912.1 (hypothetical protein SDJN03_24486, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 187.2 bits (474), Expect = 9.1e-44 Identity = 99/125 (79.20%), Postives = 104/125 (83.20%), Query Frame = 0
BLAST of CmaCh16G003160 vs. NCBI nr
Match: XP_022922750.1 (uncharacterized protein LOC111430649 [Cucurbita moschata]) HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43 Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 0
BLAST of CmaCh16G003160 vs. NCBI nr
Match: XP_023521658.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 184.5 bits (467), Expect = 5.9e-43 Identity = 98/123 (79.67%), Postives = 102/123 (82.93%), Query Frame = 0
BLAST of CmaCh16G003160 vs. NCBI nr
Match: XP_023521659.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 164.1 bits (414), Expect = 8.2e-37 Identity = 89/125 (71.20%), Postives = 97/125 (77.60%), Query Frame = 0
BLAST of CmaCh16G003160 vs. NCBI nr
Match: KAG7014939.1 (hypothetical protein SDJN02_22570, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 158.7 bits (400), Expect = 3.5e-35 Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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