Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTCCTTCC ATGGAGTTTTTCAACACCGCCAGAGTTGTTCGCCTTCAAAGCCATCTGGGCAAGTACCTCCAAGCCGCCGACGACCAACAATCCACCCGCCTAACCCGCAACGGCGCCACCCCTCACGTCCGATGGACGGTGGAGCTCATCGCCGGAAAGCCCCACGTCATACACCTCAAGAGCTGCTTCGGCAAGTACCTCACTGCCTACGACGCGCCTTTCATTCTCGGCACCGCCGGGAAGAAGGTCGTCCAGGCGGATATTGCCGCCGTCCCCAGTGAAGGCTCCATCGAGTGGGAGCCGAGGAAAGATGGGTGTTTCGTGAAGTTGAAAACGAGGGCTGGGATGTTCCTCCGTGCAAACGGCGGAGCGCCGCCGTGGAGAAACTCTGTCACTCACGATATCCCACGCCGGACGGCGACGCAGGAATGGGTGCTTTGGAGTGTGGATGCTCTTGATATCACGCCGCTTGATGAGTTGGCGGCTGACTGTATCTCACCGGCGGCCAGCTTTTCGAGCAATTCGTCGTTCTCGAGTAATTCTGATTACGATTTAGAAACCCGGTCGCCGTCGATGTCCATCTCCGGTACCGGATCTGGCCACGTCACTGACAGAGATCTG GTAAGCTTCCGGACAACTGTTTAATCCATTTTCTCATTTCATTTGAATAGTAAAAAATAAATAAATCAATATCCTTAACATTTCAAAAAAAAAAAAAATTAAAAATGTTAAAATTTCATCTATTTAACTTTTAGTTTTTTATTATTAATTATTATTTGTTCTCTTAGCTTTCTTATGAATTAAATGGTAAAGAATAATGATAATAAATGATAGAATAGAGAGTGTTTATAAGTTATTTCATAATTAAATTATTTATTTTTTTAAAGAAACAATTTGCTTCGAATCTGTCAAAGTTGACCAATTCAACGACGTTGACCTCTGACTTCGAGACAGAACTAACGTGAAGGACAATATAGGATGCCTTCTAGCTCAGGAATTTCAAAATTATATTTTAATTAATTACATTCATATTTAATACGCTTCCTTTTATTATTGTAAACTTTTTATAAACTAAATTAATAAAAATGTCGTTGAAATGTTCATTTGCCTTAAAAAAAAATATATTATTGAACTTTTAAATAAAATTTTCAAATTATCTAAATATCCTTTAATTTTCAGCTAAATTCAAAAATAATTTTAAACATTTCAAAAATATCATAAAATTTTCAAAAATACCTTTAATAAAGAAAATATCCTAAATTTTTCAAAAAGTTTCATCAATATCAAAAAAACTTCAAAAATATCATTCTACATCTCTAAACTTAAAATATAGAAAGAAAAAAAAATAATAACCTCCTTATATTACTATTATTATCTAAATTTTGTAATTTAAAATTGAAATAATTTGGAGTAAAATGAATTTAAAAAAAAAAAAAAAGAACAGAGCTAGGTTTGAACCACAAAAACTATTACCGGAATTAGCAGATTCCGGCGAGGCAAAGCCGTGGGCTCCTCCTTTATCGGGTATACAGTTCTTTACTTTCCCCGTGGTTCATTTGCCTCTCTGCTTCTTTCTCCTGAAAAAAAGTTTCTCCTTTAAATTCGTTGTGTGTTCTTGAATTTTGATTTTTGGTCTTTTTCTTTGGAGCTCAGAACAATTGAGTTTCGCATTCGATCCCCCGTTTGGACATGATTTGTTCTGAATTTTGAGTGTTTTTTTGTTTGTGAGCTAATTGGCCATAACTTTGGTGGGGGATTTAACAGAGTGCAATGGAGCTATTTCGAAGGGCACAAGTGGTTCGTCTAAAAAGCCACCATGACAAGTACCTTCTAGCAGAGGAAGACGAAGAATCCGTGTGTCAAGACCGCAATGGCTCGATCAAGAACGCCAGATGGACGGTGGAATTCATCGAGCATTCAACCGGTCTTCGCTTCAAGAGCTGCTTCGGCACGTACCTTACGGCCACCAACATCCCCTTTCTTTTGGGCATAACTGGTAAGAAGGTCCTTCAAACCCTGCCCAAAAGGCTTGATTCCTCCGTCGAGTGGGAGCCCATTAGAGAGGGCGATCAGATCAAGTTCAGAACTCGCTACGGCCAGTTCCTAAGGGCCAATGGTGGCTTGCCTCCCTGGCGAAACTCCATTACTCATGATATTCCTCATTCAACCTCCCATCAAGATTGGATTCTTTGGGACGTTGATGTTATGGTGATTCAAACTTTCAACTCTCTCGATTCCATAGCTAGTTCTACTGGATATGAACCTATTCTCCCCCCACCCCCACCACCATGGATGACTACATCCCACCACCATTCAAAGGTTGAGTCGTCGCCGTCCCGAGATCATCATTCCCATCACAAG GTCAGCTCATGATCTCAATTCTATAACTTTTTGTCAAAAATAACATAGGGACAACAAATCAGGCTAAATCAATGTATAACTATTGCATAAGTATGAAATATGTGAGATTAGTAATATTTTACATATGTATTAATATCTTATGTTGATATCAAATCTAATCAAATGCAGTCAAGTGGGCCACAGGACGAATCGACACTGAAGGTCGAGGGGAGAGTGATTCATTACAAAATCGCAAACGAGAAAGGAGAAGTGGAAGAAGGAGAAGAGGTGAGGTTAATATTCAAAGGAAGTGAAGTGGAAGAGTTGAAGGAGAGATTAAAAGAGGAGACCGGCCTAGAAGACATCGTTGTCTGCTCTCGCAACCCTCTCAATCAAAAACTTTATCCTCTTCGCCTTCAACTTCCTCCCAACAACAACGACATGCACGTTGTTGTTGTCCCTTCTTCCGGAGGTTAG mRNA sequence
TTGTCCTTCCATGGAGTTTTTCAACACCGCCAGAGTTGTTCGCCTTCAAAGCCATCTGGGCAAGTACCTCCAAGCCGCCGACGACCAACAATCCACCCGCCTAACCCGCAACGGCGCCACCCCTCACGTCCGATGGACGGTGGAGCTCATCGCCGGAAAGCCCCACGTCATACACCTCAAGAGCTGCTTCGGCAAGTACCTCACTGCCTACGACGCGCCTTTCATTCTCGGCACCGCCGGGAAGAAGGTCGTCCAGGCGGATATTGCCGCCGTCCCCAGTGAAGGCTCCATCGAGTGGGAGCCGAGGAAAGATGGGTGTTTCGTGAAGTTGAAAACGAGGGCTGGGATGTTCCTCCGTGCAAACGGCGGAGCGCCGCCGTGGAGAAACTCTGTCACTCACGATATCCCACGCCGGACGGCGACGCAGGAATGGGTGCTTTGGAGTGTGGATGCTCTTGATATCACGCCGCTTGATGAGTTGGCGGCTGACTGTATCTCACCGGCGGCCAGCTTTTCGAGCAATTCGTCGTTCTCGAGTAATTCTGATTACGATTTAGAAACCCGGTCGCCGTCGATGTCCATCTCCGGTACCGGATCTGGCCACGTCACTGACAGAGATCTGAGTGCAATGGAGCTATTTCGAAGGGCACAAGTGGTTCGTCTAAAAAGCCACCATGACAAGTACCTTCTAGCAGAGGAAGACGAAGAATCCGTGTGTCAAGACCGCAATGGCTCGATCAAGAACGCCAGATGGACGGTGGAATTCATCGAGCATTCAACCGGTCTTCGCTTCAAGAGCTGCTTCGGCACGTACCTTACGGCCACCAACATCCCCTTTCTTTTGGGCATAACTGGTAAGAAGGTCCTTCAAACCCTGCCCAAAAGGCTTGATTCCTCCGTCGAGTGGGAGCCCATTAGAGAGGGCGATCAGATCAAGTTCAGAACTCGCTACGGCCAGTTCCTAAGGGCCAATGGTGGCTTGCCTCCCTGGCGAAACTCCATTACTCATGATATTCCTCATTCAACCTCCCATCAAGATTGGATTCTTTGGGACGTTGATGTTATGGTGATTCAAACTTTCAACTCTCTCGATTCCATAGCTAGTTCTACTGGATATGAACCTATTCTCCCCCCACCCCCACCACCATGGATGACTACATCCCACCACCATTCAAAGGTTGAGTCGTCGCCGTCCCGAGATCATCATTCCCATCACAAGTCAAGTGGGCCACAGGACGAATCGACACTGAAGGTCGAGGGGAGAGTGATTCATTACAAAATCGCAAACGAGAAAGGAGAAGTGGAAGAAGGAGAAGAGGTGAGGTTAATATTCAAAGGAAGTGAAGTGGAAGAGTTGAAGGAGAGATTAAAAGAGGAGACCGGCCTAGAAGACATCGTTGTCTGCTCTCGCAACCCTCTCAATCAAAAACTTTATCCTCTTCGCCTTCAACTTCCTCCCAACAACAACGACATGCACGTTGTTGTTGTCCCTTCTTCCGGAGGTTAG Coding sequence (CDS)
ATGGAGTTTTTCAACACCGCCAGAGTTGTTCGCCTTCAAAGCCATCTGGGCAAGTACCTCCAAGCCGCCGACGACCAACAATCCACCCGCCTAACCCGCAACGGCGCCACCCCTCACGTCCGATGGACGGTGGAGCTCATCGCCGGAAAGCCCCACGTCATACACCTCAAGAGCTGCTTCGGCAAGTACCTCACTGCCTACGACGCGCCTTTCATTCTCGGCACCGCCGGGAAGAAGGTCGTCCAGGCGGATATTGCCGCCGTCCCCAGTGAAGGCTCCATCGAGTGGGAGCCGAGGAAAGATGGGTGTTTCGTGAAGTTGAAAACGAGGGCTGGGATGTTCCTCCGTGCAAACGGCGGAGCGCCGCCGTGGAGAAACTCTGTCACTCACGATATCCCACGCCGGACGGCGACGCAGGAATGGGTGCTTTGGAGTGTGGATGCTCTTGATATCACGCCGCTTGATGAGTTGGCGGCTGACTGTATCTCACCGGCGGCCAGCTTTTCGAGCAATTCGTCGTTCTCGAGTAATTCTGATTACGATTTAGAAACCCGGTCGCCGTCGATGTCCATCTCCGGTACCGGATCTGGCCACGTCACTGACAGAGATCTGAGTGCAATGGAGCTATTTCGAAGGGCACAAGTGGTTCGTCTAAAAAGCCACCATGACAAGTACCTTCTAGCAGAGGAAGACGAAGAATCCGTGTGTCAAGACCGCAATGGCTCGATCAAGAACGCCAGATGGACGGTGGAATTCATCGAGCATTCAACCGGTCTTCGCTTCAAGAGCTGCTTCGGCACGTACCTTACGGCCACCAACATCCCCTTTCTTTTGGGCATAACTGGTAAGAAGGTCCTTCAAACCCTGCCCAAAAGGCTTGATTCCTCCGTCGAGTGGGAGCCCATTAGAGAGGGCGATCAGATCAAGTTCAGAACTCGCTACGGCCAGTTCCTAAGGGCCAATGGTGGCTTGCCTCCCTGGCGAAACTCCATTACTCATGATATTCCTCATTCAACCTCCCATCAAGATTGGATTCTTTGGGACGTTGATGTTATGGTGATTCAAACTTTCAACTCTCTCGATTCCATAGCTAGTTCTACTGGATATGAACCTATTCTCCCCCCACCCCCACCACCATGGATGACTACATCCCACCACCATTCAAAGGTTGAGTCGTCGCCGTCCCGAGATCATCATTCCCATCACAAGTCAAGTGGGCCACAGGACGAATCGACACTGAAGGTCGAGGGGAGAGTGATTCATTACAAAATCGCAAACGAGAAAGGAGAAGTGGAAGAAGGAGAAGAGGTGAGGTTAATATTCAAAGGAAGTGAAGTGGAAGAGTTGAAGGAGAGATTAAAAGAGGAGACCGGCCTAGAAGACATCGTTGTCTGCTCTCGCAACCCTCTCAATCAAAAACTTTATCCTCTTCGCCTTCAACTTCCTCCCAACAACAACGACATGCACGTTGTTGTTGTCCCTTCTTCCGGAGGTTAG Protein sequence
MEFFNTARVVRLQSHLGKYLQAADDQQSTRLTRNGATPHVRWTVELIAGKPHVIHLKSCFGKYLTAYDAPFILGTAGKKVVQADIAAVPSEGSIEWEPRKDGCFVKLKTRAGMFLRANGGAPPWRNSVTHDIPRRTATQEWVLWSVDALDITPLDELAADCISPAASFSSNSSFSSNSDYDLETRSPSMSISGTGSGHVTDRDLSAMELFRRAQVVRLKSHHDKYLLAEEDEESVCQDRNGSIKNARWTVEFIEHSTGLRFKSCFGTYLTATNIPFLLGITGKKVLQTLPKRLDSSVEWEPIREGDQIKFRTRYGQFLRANGGLPPWRNSITHDIPHSTSHQDWILWDVDVMVIQTFNSLDSIASSTGYEPILPPPPPPWMTTSHHHSKVESSPSRDHHSHHKSSGPQDESTLKVEGRVIHYKIANEKGEVEEGEEVRLIFKGSEVEELKERLKEETGLEDIVVCSRNPLNQKLYPLRLQLPPNNNDMHVVVVPSSGG
Homology
BLAST of CmaCh11G010440 vs. TAIR 10
Match:
AT1G27100.1 (Actin cross-linking protein )
HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-118
Identity = 239/519 (46.05%), Postives = 320/519 (61.66%), Query Frame = 0
Query: 1 MEFFNTARVVRLQSHLGKYLQAADDQQSTRLTRNGATPHVRWTVELIAGKPHVIHLKSCF 60 ME F V+L+SHL K+L A DDQ++ R +R G WTVE + KP++I LKS Sbjct: 1 MELFTKGNNVKLRSHLDKFLVADDDQETIRQSRKGDARRAVWTVEPVVDKPNLIRLKSSH 60 Query: 61 GKYLTAYDAPFILGTAGKKVVQADIAAVPSEGSIEWEPRKDGCFVKLKTRAGMFLRANGG 120 G YLTA + P +LG G+KV Q + +WEP +DG VKLK+ G ++RANGG Sbjct: 61 GTYLTASNKPLLLGMTGEKVTQTASFNKLMDWQTQWEPERDGFQVKLKSWCGKWMRANGG 120 Query: 121 APPWRNSVTHDIPRRTATQEWVLWSVDALDITPLD----------------ELAADCISP 180 PPWRNSVTHD P + T+ W++W V +D + L+ E ++ SP Sbjct: 121 TPPWRNSVTHDEPHTSKTKNWLIWDVITIDGSDLENMSDGDESSVSSPVGSEFGSEPGSP 180 Query: 181 AASFSSNSSFSSNSDYDLET----RSPSMSISGTGSGHVTDRDLSAMELFRRAQVVRLKS 240 ++ S+ SS S + L T S S + + + T +SAME F++A+ +R+++ Sbjct: 181 VSARSTKSSISRFASLGLSTSPRWSSKPKSTASSFNQKETPVSVSAMEFFQKAKAIRMRN 240 Query: 241 HHDKYLLAEEDEESVCQDRNGSIKNARWTVEFIEHSTG-LRFKSCFGTYLTATNIPFLLG 300 H+KYL A++DEE+V Q+RNGS KNARWTVE + S +R KSC+G YLTA+N FLLG Sbjct: 241 SHNKYLTADDDEETVTQNRNGSTKNARWTVEPVRDSFHVIRLKSCYGKYLTASNERFLLG 300 Query: 301 ITGKKVLQTLPKRLDSSVEWEPIREGDQIKFRTRYGQFLRANGGLPPWRNSITHDIPHST 360 TGKKV+Q R+DSSVEWEP+REG +IK RTR G +LR NGGLPPWRNS+THD+PH + Sbjct: 301 ATGKKVIQLKLSRVDSSVEWEPLREGSKIKLRTRSGNYLRGNGGLPPWRNSVTHDVPHLS 360 Query: 361 SHQDWILWDVDVMVIQTFNSLDSIASSTGYEPILPPPPPPWMTTSHHHSKVESSPSRDHH 420 + QD I WDVDV+ I T +S S+ P PPP TS S SP Sbjct: 361 ATQDSISWDVDVVEILT-DSEFKTESAKAPPPKTTSPPPHRRPTSSPLS--AESPRTSSS 420 Query: 421 SHHKSSGPQDESTLKVEGRVIHYKIANEKGEVEEGEEV--RLIFKGSEVEELKERLKEET 480 +S ES K +GR I+Y +A+E+G VE+ V FKG+ V EL + L+EET Sbjct: 421 LSDRSDSDSVESPPKSDGRTIYYHVADEEGHVEDETTVGYAFTFKGNSVAELTQTLREET 480 Query: 481 GLEDIVVCSRNPLNQKLYPLRLQLPPNNNDMHVVVVPSS 497 +ED VVC+R+PLN KL+PLRLQLPPNN +HV+++PSS Sbjct: 481 CMEDAVVCTRSPLNGKLFPLRLQLPPNNGTLHVILLPSS 516
BLAST of CmaCh11G010440 vs. TAIR 10
Match:
AT3G28630.2 (Protein of unknown function (DUF569) )
HSP 1 Score: 337.0 bits (863), Expect = 2.5e-92
Identity = 165/290 (56.90%), Postives = 211/290 (72.76%), Query Frame = 0
Query: 207 MELFRRAQVVRLKSHHDKYLLAEEDEESVCQDRNGSIKNARWTVEFIEHSTGLRFKSCFG 266 ME+F++A+ VRL+S+HDKYLLAEEDEESV QDR+G NARWTVE +E + +R KSCFG Sbjct: 33 MEIFKKAETVRLRSYHDKYLLAEEDEESVSQDRDGRSMNARWTVEVVEKADVIRLKSCFG 92 Query: 267 TYLTATNIPFLLGITGKKVLQTLPKRLDSSVEWEPIREGDQIKFRTRYGQFLRANGGLPP 326 YLTA+NIP LG+TGK+V QTLP+RLDSS EWEP+REG Q++ +TRYGQ+LRANGGLPP Sbjct: 93 KYLTASNIPMFLGMTGKRVTQTLPRRLDSSTEWEPVREGVQVRLKTRYGQYLRANGGLPP 152 Query: 327 WRNSITHDIPHSTSHQDWILWDVDVMVIQTFNSLDSIASSTGYEPILPPPPPPWMTTSHH 386 WRNSITHDIPH ++ QDW+LWD+D ++++ + Y P+ PPPPPP Sbjct: 153 WRNSITHDIPHRSTTQDWVLWDID--ILESRKKKAPPVAEPAYTPLPPPPPPP------- 212 Query: 387 HSKVESSPSRDHHSHHKSSGPQDESTLKVEGRVIHYKIANEKGEVEE-GEEVRLIFKGSE 446 ++ DH + G S +K +GR+I+Y+I +E G V+E +E FKG Sbjct: 213 --ELLQVRKDDHQEPNSPKGFSLSSPVKADGRLIYYRIGDEDGNVDETAKEELFCFKGMG 272 Query: 447 VEELKERLKEETGLEDIVVCSRNPLNQKLYPLRLQLPPNNNDMHVVVVPS 496 +EELKE+L EETGL DI +CS+NPLN KLYPLRL LPPNN MHVV++PS Sbjct: 273 LEELKEKLIEETGLSDISICSKNPLNGKLYPLRLHLPPNNTKMHVVLIPS 311
BLAST of CmaCh11G010440 vs. TAIR 10
Match:
AT3G28630.1 (Protein of unknown function (DUF569) )
HSP 1 Score: 335.1 bits (858), Expect = 9.6e-92
Identity = 167/295 (56.61%), Postives = 213/295 (72.20%), Query Frame = 0
Query: 207 MELFRRAQVVRLKSHHDKYLLAEEDEESVCQDRNGSIKNARWTVEFIEHSTGLRFKSCFG 266 ME+F++A+ VRL+S+HDKYLLAEEDEESV QDR+G NARWTVE +E + +R KSCFG Sbjct: 33 MEIFKKAETVRLRSYHDKYLLAEEDEESVSQDRDGRSMNARWTVEVVEKADVIRLKSCFG 92 Query: 267 TYLTATNIPFLLGITGKKVLQTLPKRLDSSVEWEPIREGDQIKFRTRYGQFLRANGGLPP 326 YLTA+NIP LG+TGK+V QTLP+RLDSS EWEP+REG Q++ +TRYGQ+LRANGGLPP Sbjct: 93 KYLTASNIPMFLGMTGKRVTQTLPRRLDSSTEWEPVREGVQVRLKTRYGQYLRANGGLPP 152 Query: 327 WRNSITHDIPHSTSHQDWILWDVDVMVIQTFNSLDSIASSTGYEPILPPPPPPWM--TTS 386 WRNSITHDIPH ++ QDW+LWD+D ++++ + Y P+ PPPPPP + Sbjct: 153 WRNSITHDIPHRSTTQDWVLWDID--ILESRKKKAPPVAEPAYTPLPPPPPPPELLQVRK 212 Query: 387 HHHSKVESSPSRDHHSHHKSSGPQDE---STLKVEGRVIHYKIANEKGEVEE-GEEVRLI 446 H + S S S D+ S +K +GR+I+Y+I +E G V+E +E Sbjct: 213 DDHQEPNSPKGFSLRSPRFSKSESDDTVSSPVKADGRLIYYRIGDEDGNVDETAKEELFC 272 Query: 447 FKGSEVEELKERLKEETGLEDIVVCSRNPLNQKLYPLRLQLPPNNNDMHVVVVPS 496 FKG +EELKE+L EETGL DI +CS+NPLN KLYPLRL LPPNN MHVV++PS Sbjct: 273 FKGMGLEELKEKLIEETGLSDISICSKNPLNGKLYPLRLHLPPNNTKMHVVLIPS 325
BLAST of CmaCh11G010440 vs. TAIR 10
Match:
AT1G59710.1 (Protein of unknown function (DUF569) )
HSP 1 Score: 297.0 bits (759), Expect = 2.9e-80
Identity = 163/298 (54.70%), Postives = 207/298 (69.46%), Query Frame = 0
Query: 207 MELFRRAQVVRLKSHHDKYLLAEEDEESVCQDRNGSIKNARWTVEFIEHSTGL-RFKSCF 266 ME+F++A+ VRL+SHHDKYL+A+EDEESV Q+RNGS A+WTVE I ST L R KS + Sbjct: 1 MEIFQKAKAVRLRSHHDKYLVADEDEESVTQERNGSAGAAKWTVEIIPGSTNLIRLKSAY 60 Query: 267 GTYLTATNIPFLLGITGKKVLQTLPKRLDSSVEWEPIREGDQIKFRTRYGQFLRANGGLP 326 G YLTA+N PFLLG TGKKVLQT P RLDSS+ WEPIR+ +K +TRYG FLR NGGLP Sbjct: 61 GKYLTASNKPFLLGATGKKVLQTKPSRLDSSLAWEPIRDSALVKLKTRYGNFLRGNGGLP 120 Query: 327 PWRNSITHDIPHSTSHQDWILWDVDVMVIQTFNSLDSIASSTGYEPILPPPPPPWMTTSH 386 PWRNS+THDIPH ++ Q+W+LW +DV+ I L + A+S + L PP + H Sbjct: 121 PWRNSVTHDIPHRSATQEWVLWHIDVVEI-----LPANANSDHHHQHLQLQQPP--SPLH 180 Query: 387 HHSKVE---SSPSRDHHSHHKSSGPQ--DESTLKVEGRVIHYKIANEKGEVEEG--EEVR 446 H ++ SPSR + S S K EGRVI+Y +A++ +VE+ E Sbjct: 181 HSDSLDFTPGSPSRSDRFFRQESTDSLAVGSPPKSEGRVIYYHVADDDDDVEDDSVEVSS 240 Query: 447 LIFKGSEVEELKERLKEETGLEDIVVCSRNPLNQKLYPLRLQLPPNNNDMHVVVVPSS 497 FKG+ VEEL RLKEE+ +ED++VC+R+PLN KL+PLRLQLPPNN DM VV+VP S Sbjct: 241 FTFKGNGVEELTMRLKEESNVEDVIVCTRSPLNGKLFPLRLQLPPNNADMTVVLVPKS 291
BLAST of CmaCh11G010440 vs. TAIR 10
Match:
AT1G69900.1 (Actin cross-linking protein )
HSP 1 Score: 292.7 bits (748), Expect = 5.4e-79
Identity = 178/395 (45.06%), Postives = 239/395 (60.51%), Query Frame = 0
Query: 1 MEFFNTARVVRLQSHLGKYLQAADDQQSTRLTRNGATPHVRWTVELIAGKPHVIHLKSCF 60 ME FN VRL+S Y+ A +D+++ R + +G + WTVE++ KP I LKSC+ Sbjct: 1 MELFNNGTAVRLRSCHDTYIYAVEDEKTVRQSSDGTSRQSLWTVEMVPRKPKFIRLKSCY 60 Query: 61 GKYLTAYDAPFILGTAGKKVVQADIAAVPSEGSIEWEPRKDGCFVKLKTRAGMFLRANGG 120 GKYLTA ++ F+LG G KV+Q +E +WEP K+ VKL + +LR NGG Sbjct: 61 GKYLTASESSFLLGMTGAKVIQTP-PFRQAEHESDWEPIKEESTVKLMSWNEKYLRGNGG 120 Query: 121 APPWRNSVTHD-IPRRTATQEWVLWSVDALDITPLDELAADCI-SPAASFSSN-SSFSSN 180 APPWRNSVT D P +AT++W+LWSV+ ++ P L AD SPA+SF+S+ SS SN Sbjct: 121 APPWRNSVTCDREPHISATKKWILWSVEVVE-NPDKVLFADRFSSPASSFNSSVSSDGSN 180 Query: 181 ---SDYDLETRSPSMSI---------------------SGTGSGHVTDR---------DL 240 L T S SI SGT S T+R ++ Sbjct: 181 LGSPGQKLLTFGSSESIGSDPGSLVSVSSSKLMFTPSRSGTLSPKPTERKCSKKIIVENV 240 Query: 241 SAMELFRRAQVVRLKS--HHDKYLLAEEDEESVCQDRNGSIKNARWTVEFIEHS-TGLRF 300 SAME+FR A+ VRL+S HH KYL+A++DEE V +NGS K ARW VE + S +R Sbjct: 241 SAMEIFRDAKSVRLRSYAHHGKYLIADDDEEGVIMGKNGSSKEARWRVEMVPGSEKAIRL 300 Query: 301 KSCFGTYLTATNIPFLLGITGKKVLQTLPKRLDSSV-EWEPIREGDQIKFRTRY-GQFLR 355 KSC G YLTA+N FLLG TG KV+Q+ R D EWEP++EG ++K R+R G +LR Sbjct: 301 KSCHGGYLTASNERFLLGATGHKVVQSRKIRADEPAGEWEPVKEGSRVKLRSRNGGNYLR 360
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
T T G T C C T T C C A T G G A G T T T T T C A A C A C C G C C A G A G T T G T T C G C C T T C A A A G C C A T C T G G G C A A G T A C C T C C A A G C C G C C G A C G A C C A A C A A T C C A C C C G C C T A A C C C G C A A C G G C G C C A C C C C T C A C G T C C G A T G G A C G G T G G A G C T C A T C G C C G G A A A G C C C C A C G T C A T A C A C C T C A A G A G C T G C T T C G G C A A G T A C C T C A C T G C C T A C G A C G C G C C T T T C A T T C T C G G C A C C G C C G G G A A G A A G G T C G T C C A G G C G G A T A T T G C C G C C G T C C C C A G T G A A G G C T C C A T C G A G T G G G A G C C G A G G A A A G A T G G G T G T T T C G T G A A G T T G A A A A C G A G G G C T G G G A T G T T C C T C C G T G C A A A C G G C G G A G C G C C G C C G T G G A G A A A C T C T G T C A C T C A C G A T A T C C C A C G C C G G A C G G C G A C G C A G G A A T G G G T G C T T T G G A G T G T G G A T G C T C T T G A T A T C A C G C C G C T T G A T G A G T T G G C G G C T G A C T G T A T C T C A C C G G C G G C C A G C T T T T C G A G C A A T T C G T C G T T C T C G A G T A A T T C T G A T T A C G A T T T A G A A A C C C G G T C G C C G T C G A T G T C C A T C T C C G G T A C C G G A T C T G G C C A C G T C A C T G A C A G A G A T C T G A G T G C A A T G G A G C T A T T T C G A A G G G C A C A A G T G G T T C G T C T A A A A A G C C A C C A T G A C A A G T A C C T T C T A G C A G A G G A A G A C G A A G A A T C C G T G T G T C A A G A C C G C A A T G G C T C G A T C A A G A A C G C C A G A T G G A C G G T G G A A T T C A T C G A G C A T T C A A C C G G T C T T C G C T T C A A G A G C T G C T T C G G C A C G T A C C T T A C G G C C A C C A A C A T C C C C T T T C T T T T G G G C A T A A C T G G T A A G A A G G T C C T T C A A A C C C T G C C C A A A A G G C T T G A T T C C T C C G T C G A G T G G G A G C C C A T T A G A G A G G G C G A T C A G A T C A A G T T C A G A A C T C G C T A C G G C C A G T T C C T A A G G G C C A A T G G T G G C T T G C C T C C C T G G C G A A A C T C C A T T A C T C A T G A T A T T C C T C A T T C A A C C T C C C A T C A A G A T T G G A T T C T T T G G G A C G T T G A T G T T A T G G T G A T T C A A A C T T T C A A C T C T C T C G A T T C C A T A G C T A G T T C T A C T G G A T A T G A A C C T A T T C T C C C C C C A C C C C C A C C A C C A T G G A T G A C T A C A T C C C A C C A C C A T T C A A A G G T T G A G T C G T C G C C G T C C C G A G A T C A T C A T T C C C A T C A C A A G T C A A G T G G G C C A C A G G A C G A A T C G A C A C T G A A G G T C G A G G G G A G A G T G A T T C A T T A C A A A A T C G C A A A C G A G A A A G G A G A A G T G G A A G A A G G A G A A G A G G T G A G G T T A A T A T T C A A A G G A A G T G A A G T G G A A G A G T T G A A G G A G A G A T T A A A A G A G G A G A C C G G C C T A G A A G A C A T C G T T G T C T G C T C T C G C A A C C C T C T C A A T C A A A A A C T T T A T C C T C T T C G C C T T C A A C T T C C T C C C A A C A A C A A C G A C A T G C A C G T T G T T G T T G T C C C T T C T T C C G G A G G T T A G 200 400 600 800 1000 1200 1400 Expect = 7.9E-11 / Score = 44.0 Expect = 8.4E-14 / Score = 53.7 Score = Score = Score = Score = Score = Score = Expect = 1.9E-54 / Score = 183.2 Expect = 9.9E-67 / Score = 223.0 Score = Score = Sequence G3DSA:2.80.10.50 G3DSA:2.80.10.50 mobidb-lite mobidb-lite PTHR31205 PTHR31205:SF42 PTHR31205 PF04601 SSF50405 SSF50405
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available GENE3D 2.80.10.50 coord: 4..147 e-value: 7.9E-11 score: 44.0
None No IPR available GENE3D 2.80.10.50 coord: 215..331 e-value: 8.4E-14 score: 53.7
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 368..415
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 389..415
None No IPR available PANTHER PTHR31205 ACTIN CROSS-LINKING PROTEIN (DUF569) coord: 202..496
None No IPR available PANTHER PTHR31205:SF42 CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED coord: 202..496 coord: 1..192
None No IPR available PANTHER PTHR31205 ACTIN CROSS-LINKING PROTEIN (DUF569) coord: 1..192
IPR007679 Domain of unknown function DUF569 PFAM PF04601 DUF569 coord: 207..347 e-value: 9.9E-67 score: 223.0 coord: 1..144 e-value: 1.9E-54 score: 183.2
IPR008999 Actin-crosslinking SUPERFAMILY 50405 Actin-crosslinking proteins coord: 211..351
IPR008999 Actin-crosslinking SUPERFAMILY 50405 Actin-crosslinking proteins coord: 5..146
Relationships
The following mRNA feature(s) are a part of this gene: