CmaCh11G006740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G006740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Regulator of Vps4 activity in the MVB pathway protein
Location	Cma_Chr11: 3255729 .. 3263565 (-)
RNA-Seq Expression	CmaCh11G006740
Synteny	CmaCh11G006740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTTGATCACTACACGGAAACAAAGTTCCTTTCACTTGTTCTTTCTTCGCTCTGATTTCCTTCCTTATTCATTGTTCTTCAGCCTATTTTTTTCTTCACTATTACTGTCTTTTCTTCAATTGTTGAAGTTTTTGTTTCTTTTTTGTCGGCATAATCGGATATCCTATCCTTCGTGACAAGGATTTTGTAATAAAGGAGACAGTTTTCGGTTTGCCGCGTTGAGATCTGGTTTTGGATTCCTGCAACGATGCTGCATAAGAGCTTCAAGCCTGCGAAATGGTAGGGTTCAATTTTGTTTTTTTTATGTACAAATTAGATGAATTCAAACGGAATTGTGATTTCGGATTCGTTGATTAATTGATTGTATTTGATGCATTTTTTTTTTTCGTTTGAATTCTATTGAATTGGCTTGGTGCAGTAAGACATCGCTGAAGTTAGCGGTTTCGCGGATTAAGCTTTTGAGGAATAAGAAAGATGTCCATGTCAAGCAGCTGAAGGGAGAATTGGCCAAGTTGCTCGAGGCTGGACAGGATCAGACGGCTAGAATTCGGGTATCGTAGTGTTTTCTTCATTTCTGGAATTGATTGTGTATATATTTTCTTCGGTTTACTTGTGTCTTTATCAAGCCACCGCTGTTTTTGAGACCTAATGTCATATAGGAAGATGAATTCTAGCATAGCGGTATGATTCGCGCGTCGACTTGATTATCTCTACTCGAGCCCCTCTTTCCTGAAGAATCTATGTTTCTATCTATATTTCAGGTGGAACACTTTGTTAGAGAAGAGAAATCGAAGGAAGCGTATGAACTCATCGAAATATTTTGCGAGCTAATTGTGGCACGTATGCCAATGATCGAGTCCCAAAAGTATGTTCATTTTCTTGATTGAAATTATTTTTGTTCATTTCTCATTATCTTTTGCATATAGGATATACTTTGATTTCAAAATATGAATTTGTAGTTTGATTTCATTTGAGCTCCGATTTCTATTGAAACAAAATTTCCCCTCCTTGTGATGAATGAAAAATTCTTATTCTTATGTGCATTGTTATTAATTCCTACTATGTTTTTATGTCCAGAAATTGCCCGATAGACTTGAAGGAATCAGTCTCGAGTGTCATTTTTGCATCGCCCAGATGTGCAGATATTCCAGAGCTCTTGGACGTTCGTAAACACTTCAAAGCAAAATATGGAAAAGAATTTGTCTCAGCCGCAGTGGAACTACGCCCAGAATGTGGTGTGAATCGCATGGTAAGTGTTTTAGCTGTTTTGCCGTTCATAAGTTTAGGAAATGTGGATATCTACGAAAACTACTAAGTTCCATTGACTTTCCCTTTCATTTTATTACAACTTTTCAGTTGGTCGAAAAACTATCTGCTAAAGCACCTGATGGTCCGAGCAAAATTAAAATATTGACTAAAATTGCTGAGGAATATAACGTAAAATGGGATCCCAAATCCTTTGGTGACAACATCAACCCTCCGGCCGACTTGTTGGTAAATTTTAGTTTTTAGATTATTTCCTTCACTCCTTAAGGTGATTTTTTAATCACTCCTTCACTCCTTACGAACTTTGTTGAGCAGAATGGCCCAAATACTTTTGGGAGGGCTAGTCAAATACAGATGGAGGCTATTGGTGGCCAACCCTCATTTGATCACAATAACAGGGGATCTCCTAATATTCAAGCTCCACCCGAATCCGATGAAAGGCAACGTATACCTGAAGACCCCGTCAATCGCAATTTGAGATCAAACCATCATACCCAGCAATCCAACTTTGCTGATGTCAATGCTAATCAAAGCAACTTCACTGGCCATCGAAATTCAGAAGCAAGATCTTCTGGTATGTGAAAAATACTTTCGATGTGATCAATGGATATATATGTATAGAAGACTGCTACTTTTCCTTGGATTTGTAATCATTGGATGTATATTAATCTGGTATGCAGAAACTAGTGCAGAGGGGATGCATAGGCACTCGAATTCTGGTGATCAAAATAATTACGCTTCAGGCAGGCAGCATTGGAGTATGGACTTTAAGGATGCTACCTCTGCTGCGAAGGCAGCTGCTGAATCTGCAGAACTAGCAAGCCTTGCTGCCCGAGCTGCTGCAGAACTTTCTAGTCGTGGAAACCTATCCCAACCATCCTCTTCAGAGTTCCTTAAATCTTCATCTTATAATTTAAGGGCTGAAGGACCTCAAGGATATGCTAGCGGAAATTTGCGAGACCAACAGCTTCCTAAAGACCAAGTTGTCAGTGCCCCTCATAATAGTTCCATGCCGGATGATAATTGGAGAGACAATGACACAAGAAGATTTATGGGGAATGATGCCAAGAATTTTAGCTATCCATCTTCAAGTGCCAGTAACAATGATGTTAACATATCAGCAACCAATTTCAATGCGGCAGACCGTTACTCTTTCAAGAACTCATCCGAACATGGGTTTAGTGACTCCCTTGGTAGTAGTGCATCTGTGGAGAAGCAACCCAGAAAATTTGATGCTAACGCATCTGTAACCAGTTTCAATGCAGCAGATAGATCCTCTTTCAAGAATCCGTCCGATCATGGGTTCAGTGACCCTCTTGATAGTGTGGATATGCAACCCAGAAACTTTGGTTCTAACACATCTGTCACTAATTTCAGTGAATCAGATAGATACTCTCTCAAGAACCCATCTGAACCTGGGTTTAGAGACCCTCTTGGTAGTAGTACCAGCATGGAGAAACATCCTATAAACGTTGATGTAGAATATGTTAATGATCAGCCATTTGGTATGGGTTTTGAAAGAACTAGTTCCTATGGAGATTCGAGGATTGGAAATAGTTCAAATAAAGTTCCTTCCCATGAGAAGCTGGTGAACGATACTTACGAGAATCCTTTTGCCGTAGATAAACCAAATGACCATGAAAGTACTGTTGATACGAGTTTTAACGATCATGCTAGTGCGGTCTTCGATGATTACGGTCCAGATGATGATTGTGTTCCAGACTACGAATACCAGAGAAGACAATCTATTCTGGAACCTTCATCGCCTAAAGGGAAGGTGCCAATAAACTCAGCAACAGATGATACTTGGGTTTTCAAGCAAAACATGAATGACTCTCCTGAGAAGTCTGTTTCACACACGCAAATTTCTGCTGATCGTGCTTCTTTGTTTGCTGGGAATGTGGGAAGTTTTGATGATCCTTCCCATTCTGATGACTTGTTGCCGGCAACTTTTGACCATTCAGATGGACCTAGTTCTGAAAGTGAGAAAGAGCCGGAAGAATTTGAGGTCATTGGTAAAGATCACTATAGCAAATTCTCTAAGAGGCAGAATTTGCCATCTGAAAAACCAGAATGGTCTCAAAACATTAGTCATGGATCACCTGGATCTTCAGATGAGGATAATAGAAACACGCCATCTCATCGCCTCTCTTCTGAGCTTCCACTTGTCCATGAATTGAAAAAGAAAGACAGCCCACCAAGGTCTCTTGATATTCTACACGACAGTGTAATACTAGAAGAATCGACTTCAGAAAGCAACAGTGGCTTGAATTTTGGGAAACTGAAGGGTGGCCTAAGAAATCAAAAGAGTAATCCTAGGCGTTCACATGCAAGCAATTCATCAATAAGTGACTTATCATCCAAACAAGCATGTGAAAACGATGCCTCAAAAACTGCCCAGCCTACCTTAGTTTCTTCTTCGACAACCAGGACTTCGTTTAGATCAAATGCTCCCAGTGAACTATATGATGGAAGTGTAGAAGAAAAACCAGCTGAAGAGAAGGGCCCGCGAGCCAAGTTTAATAGCTTTAACTCGAATTTTGATGATTCAAAGGATAATTTCTCGGATTATACGGTTAGAAGTGATCAAGAGCGGCACAAAAACAAAGAGGTGGATGAAATATCAAAGAAGCCAGCCCCAACAAGAGTAGGAGTGAAGTATCCTGGTTTCCATGATGACGATGATTCTGAAGAAGATTCACCTGGACAAAATGTGAAAAATAGTCCTCATCGAGTTATGGGTCTTTCTAGACGGACCAAAGCATCTCCTAAAACTCCAAGTTCACGTATGGAGGACTCGTACAGGACACCCACGAGTCATGAGGATGTAAGTGAGAGAAAAGCTTCAAGGAGTTATGATGCATCCAAATCTCCATTGAAGGCAAAGACTGGAACAAGATACTCTGATCACTATGAAAGTTCAAGGCAGCCTCAATCATCTAAACCTTTCAACCAAACTCCTGAAACTAAGAGGTCCTATAATGAGGAAAGGTTGAAATCTTCTGCGAAGGAACGACAATCCTATTATCCTCCTCCAGAGTTAGATAGGCTGGGCAATTTCGAGAGTTCGAGGGGGACAACTGCAGCTTCTGCAAAGACTCGGGCTCAATCGAGCAACTCGGAGCAGCCTCAATCAATGAAACCTTCCAAACCAAGTCCTGAAACCAAAAGGTCTTTCCATGAAGAAAGACCAACATCTTCTACGAAGGAACGGCTATTCAATCCTTCCCCGAAAATGGAAACACAAGACAACACTGAGAGTTCAGAGAAGGAGAAGACCAAGACAGTTGAGAAAGCCAGTCATGTTCACCCAAAGCTTCCCGACTATGACAACTTTGCAGCACACTTCCTTTCACTCCGACAGAATAACAAGTAAATCTAGTAGCTTGGCGTTGAATATACCTATACGTATACAAATCTATTTTTTGATTAATTATTTGAATTTGTGTGTGGCTCTTTGTTATATAGCTCTTATTCATGATTACAACTCTATAGGGATGTGCAGGTTAAAGGAGACAATTTGATTCATCATTTGTAGTTGGGGGGGGGGGGGGGGGGGGAAACATTCTGAAGCTAATGAAAACTACATAATAAACTTCCCAATTAGCCAAAAGAAGTATCTGCATGCATCAAGATAAAGCTAGAACAAGAAGTGATTCACAAAATCTATTGAAGGGGAGATGTGTTGTTTAAAATCTGATTGTTCCTTTTAGAGAAATGCTCTGACAGGCTTAAGCCACAAGATCTCCTTTTTTTCCTTTCTTAAAAGCAGGAAAGAAGGCTCCCATATTGGATGGCAAAGGAGTTTTCCAACCAAAAGATGATAGGATCTGAGGCCTATAAACACAAAGATTTACCTTAAGGTAGAAGAGTTTTCCATGGTTCTGCTTCTACTCTGACTTAAGGAATGAGTGCACTAAGCTTTAATGTTTATAAAATATAAAATATAGAGAAGAAAAAGAATATGAGCAGCTTGAACATTGTGTACTTCAGTATTAAGATAATACAAGCTCATTTTCTCTAGAACTGCTCGTCTCTCTCTGTTCTGCATGGTCTCTTTATGGGAAGAATTTTGAAGCTTAGAGCTGCATGGTCTCTAAAACTTGAGTAATGCAGCAAGCAATTAGGTCATGCTTTCATTTGGTTGCTTTAGTGAGATCGTATTCTTCCTCAAGCTTAGAGTTGCCTTTAGCCAGACCCGTTTGGTTGCCATAGTGGGAAGGGGTTCTTAGTAGAGAAAAGAATCGCTGAGAGATAGAGACGAATGAGTGGCCGTGCAACATGCTCCAGGTTATTTAAATGATAGAAAACAAATTTGTAAATGTGTGAAAATATTATTAGATTAAATGTAGATTTTTATTTTAATTTAATATTTAAATATAAATACTTATTTATTTTGGTTTCTAAATTATCATTTTGTTTCTGAAAATAAAATTTTAGATTTCAATACTAATTTAGTCACTATAATTTTTGCATATTTTTAATTCATTTTGGTAAATCTTTTTTTAGTTTTATTAATTGATATCACATAGGACAAATCTATTATTATATATATAATTGATTTTTTTAAAAAAATGAAATGAACGGAGTTAAGTCACTTTTAAAATATAAAAATCAAAATGAATAAAATTACTAAGACAAAAAATGAACTAAAATTAAAATATTTCACATAAACTAAAATGAAATAATATAAAAAACTAAAATAGTATTTAAAAAATAATAATGTGGGCCTATTGGGCCGCAATCACTACTAAGCCCAATGGATCAAAACACTGATAAATTGGTACGACCCTGAAACTAGGGTATTGGGCAGATTTAAGTTGTACCCCCTCATCCTGGTGCATCCTTCAAACCCTAGCAAGGTCGCTCTGCTTCTGCCATTTTTAGGTTATCTAAAGTTCCGATTTCTTTGCTCAAACGGATTGAAATAGATAGACAATCGCCTTTGTGACGTTGTTGGTTTTGCTTTTATGCTGCTTTCGCTTCGAATGTCAATTCTCGACATTGTGTTGTTTTCATTATTCATGAGTTCGTTTTAACCGGTTGCAGGTGTAATCGAAGAAGCCGACTGTAGATATGGTTGAGAAAACGAAGGGGAGGAAGGAGGAGGTGGTCAGCAGAGAGTACACCATCAATCTACACAAGCGTCTGCATGGCTGGTACCAACTCATTCTTACATGTTTTTCCTTGCGTTTTTACTCATTCCTCGCTATCAACTGATGTCATACTGCTGCCCAATTAGATCTGTAAGCTGGTTTTTGATGTTCGGCCAATATATATGGCGAGAGAATTTCAATTGCTTATGTTTTGAAAATAATTACGATGCCCTTTTTCTCGTGATTTTAATTATGTAAACTTGTAATCTGGCAACTGTTGTGGCAGGTCAACGTTGTTATTTGTGTCGGTATATACTTAATTGTTGAAATTTCTATAAGATTAGAGCTTGGGGACGAAGGATAAATTTTATCGGTGAATTTCTTTACGAACACGTATCAGTTGATCAAAGAATAATCGCATGAACTGATAGTAGAGGGGTATTGAATATAGGAGATCGAGAAGAGTAATAATAGAGCTAAATCTTGGAGAATTTTTATCCAAATTTGTACCACAAAACGTGAAGAGAAAGACAGTTCAATATAGGTAGTAGTAAGTTTCTCAGGTGTCTGTTATGTATTGTAAACTGGTGGATTGCTTATGCGCTGTTCCTTCTGTCATAACGCTCATTTCAGTTAGTAGTTTCTCCTCTTGCATTTTTGTGTTCGTAGTTTTTCCCCCTAATTTTAATTTCAATCGTGAATTTGGATTCGATTTCATAACTGTAACAACTCCCTAATTCTTATGCTTAACTTGAATTCTAAATAACAGCACCTTCAAGAAGAAGGCTCCCAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAAGGCAATGGGAACGAAGGACGTTAGGGTGGACGTGAAATTGAACAAGCATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGAGTCCGTATTGCACGCAAGAGGAACGACGACGAAGATGCAAAGGAAGAACTGTATTCGCTAGTCACCGTTGCAGAGATCCCAGCAGAAGGTTTGAAAGGATTAGGGACTAAGGTCATCGCTGAAGAAGACTGATCTGATCTCTCATTCCATTTGCCTTGTTACCTGGTACTTCCAACTTTTGGTGAATTTTCGGTACAAGACTTGTTTTGAGCCAGAGTTATCCTTCATTGCCCTCCCTGTGGTGCACTTGTTTATTTCACTTTGAATACACTATTATTGGAAGCAGTTGATTGATTTAGTTACATTTAGTGTTTGGATTGTGTTTTTAACTTAAGAGGTTCTTCTCTTTACACTTAATTTTGGCATCAATTTCACCTTTCTCTTCTTTAACGCCCTGTTTCTCTACCCATTGCAAATTCTCAAGTGGCAGTATGGAACGCTGATGATATGAACCCTAAGAGTTGGGATATCATCATATGATAAAATGCTGTGTATCTTCAAAAGATATAATCTGGTAGTCATGCAATCTTTATGACATCTTGTTTTAAGAATTAT

mRNA sequence

AAAAGTTGATCACTACACGGAAACAAAGTTCCTTTCACTTGTTCTTTCTTCGCTCTGATTTCCTTCCTTATTCATTGTTCTTCAGCCTATTTTTTTCTTCACTATTACTGTCTTTTCTTCAATTGTTGAAGTTTTTGTTTCTTTTTTGTCGGCATAATCGGATATCCTATCCTTCGTGACAAGGATTTTGTAATAAAGGAGACAGTTTTCGGTTTGCCGCGTTGAGATCTGGTTTTGGATTCCTGCAACGATGCTGCATAAGAGCTTCAAGCCTGCGAAATGTAAGACATCGCTGAAGTTAGCGGTTTCGCGGATTAAGCTTTTGAGGAATAAGAAAGATGTCCATGTCAAGCAGCTGAAGGGAGAATTGGCCAAGTTGCTCGAGGCTGGACAGGATCAGACGGCTAGAATTCGGGTGGAACACTTTGTTAGAGAAGAGAAATCGAAGGAAGCGTATGAACTCATCGAAATATTTTGCGAGCTAATTGTGGCACGTATGCCAATGATCGAGTCCCAAAAAAATTGCCCGATAGACTTGAAGGAATCAGTCTCGAGTGTCATTTTTGCATCGCCCAGATGTGCAGATATTCCAGAGCTCTTGGACGTTCGTAAACACTTCAAAGCAAAATATGGAAAAGAATTTGTCTCAGCCGCAGTGGAACTACGCCCAGAATGTGGTGTGAATCGCATGTTGGTCGAAAAACTATCTGCTAAAGCACCTGATGGTCCGAGCAAAATTAAAATATTGACTAAAATTGCTGAGGAATATAACGTAAAATGGGATCCCAAATCCTTTGGTGACAACATCAACCCTCCGGCCGACTTGTTGAATGGCCCAAATACTTTTGGGAGGGCTAGTCAAATACAGATGGAGGCTATTGGTGGCCAACCCTCATTTGATCACAATAACAGGGGATCTCCTAATATTCAAGCTCCACCCGAATCCGATGAAAGGCAACGTATACCTGAAGACCCCGTCAATCGCAATTTGAGATCAAACCATCATACCCAGCAATCCAACTTTGCTGATGTCAATGCTAATCAAAGCAACTTCACTGGCCATCGAAATTCAGAAGCAAGATCTTCTGAAACTAGTGCAGAGGGGATGCATAGGCACTCGAATTCTGGTGATCAAAATAATTACGCTTCAGGCAGGCAGCATTGGAGTATGGACTTTAAGGATGCTACCTCTGCTGCGAAGGCAGCTGCTGAATCTGCAGAACTAGCAAGCCTTGCTGCCCGAGCTGCTGCAGAACTTTCTAGTCGTGGAAACCTATCCCAACCATCCTCTTCAGAGTTCCTTAAATCTTCATCTTATAATTTAAGGGCTGAAGGACCTCAAGGATATGCTAGCGGAAATTTGCGAGACCAACAGCTTCCTAAAGACCAAGTTGTCAGTGCCCCTCATAATAGTTCCATGCCGGATGATAATTGGAGAGACAATGACACAAGAAGATTTATGGGGAATGATGCCAAGAATTTTAGCTATCCATCTTCAAGTGCCAGTAACAATGATGTTAACATATCAGCAACCAATTTCAATGCGGCAGACCGTTACTCTTTCAAGAACTCATCCGAACATGGGTTTAGTGACTCCCTTGGTAGTAGTGCATCTGTGGAGAAGCAACCCAGAAAATTTGATGCTAACGCATCTGTAACCAGTTTCAATGCAGCAGATAGATCCTCTTTCAAGAATCCGTCCGATCATGGGTTCAGTGACCCTCTTGATAGTGTGGATATGCAACCCAGAAACTTTGGTTCTAACACATCTGTCACTAATTTCAGTGAATCAGATAGATACTCTCTCAAGAACCCATCTGAACCTGGGTTTAGAGACCCTCTTGGTAGTAGTACCAGCATGGAGAAACATCCTATAAACGTTGATGTAGAATATGTTAATGATCAGCCATTTGGTATGGGTTTTGAAAGAACTAGTTCCTATGGAGATTCGAGGATTGGAAATAGTTCAAATAAAGTTCCTTCCCATGAGAAGCTGGTGAACGATACTTACGAGAATCCTTTTGCCGTAGATAAACCAAATGACCATGAAAGTACTGTTGATACGAGTTTTAACGATCATGCTAGTGCGGTCTTCGATGATTACGGTCCAGATGATGATTGTGTTCCAGACTACGAATACCAGAGAAGACAATCTATTCTGGAACCTTCATCGCCTAAAGGGAAGGTGCCAATAAACTCAGCAACAGATGATACTTGGGTTTTCAAGCAAAACATGAATGACTCTCCTGAGAAGTCTGTTTCACACACGCAAATTTCTGCTGATCGTGCTTCTTTGTTTGCTGGGAATGTGGGAAGTTTTGATGATCCTTCCCATTCTGATGACTTGTTGCCGGCAACTTTTGACCATTCAGATGGACCTAGTTCTGAAAGTGAGAAAGAGCCGGAAGAATTTGAGGTCATTGGTAAAGATCACTATAGCAAATTCTCTAAGAGGCAGAATTTGCCATCTGAAAAACCAGAATGGTCTCAAAACATTAGTCATGGATCACCTGGATCTTCAGATGAGGATAATAGAAACACGCCATCTCATCGCCTCTCTTCTGAGCTTCCACTTGTCCATGAATTGAAAAAGAAAGACAGCCCACCAAGGTCTCTTGATATTCTACACGACAGTGTAATACTAGAAGAATCGACTTCAGAAAGCAACAGTGGCTTGAATTTTGGGAAACTGAAGGGTGGCCTAAGAAATCAAAAGAGTAATCCTAGGCGTTCACATGCAAGCAATTCATCAATAAGTGACTTATCATCCAAACAAGCATGTGAAAACGATGCCTCAAAAACTGCCCAGCCTACCTTAGTTTCTTCTTCGACAACCAGGACTTCGTTTAGATCAAATGCTCCCAGTGAACTATATGATGGAAGTGTAGAAGAAAAACCAGCTGAAGAGAAGGGCCCGCGAGCCAAGTTTAATAGCTTTAACTCGAATTTTGATGATTCAAAGGATAATTTCTCGGATTATACGGTTAGAAGTGATCAAGAGCGGCACAAAAACAAAGAGGTGGATGAAATATCAAAGAAGCCAGCCCCAACAAGAGTAGGAGTGAAGTATCCTGGTTTCCATGATGACGATGATTCTGAAGAAGATTCACCTGGACAAAATGTGAAAAATAGTCCTCATCGAGTTATGGGTCTTTCTAGACGGACCAAAGCATCTCCTAAAACTCCAAGTTCACGTATGGAGGACTCGTACAGGACACCCACGAGTCATGAGGATGTAAGTGAGAGAAAAGCTTCAAGGAGTTATGATGCATCCAAATCTCCATTGAAGGCAAAGACTGGAACAAGATACTCTGATCACTATGAAAGTTCAAGGCAGCCTCAATCATCTAAACCTTTCAACCAAACTCCTGAAACTAAGAGGTCCTATAATGAGGAAAGGTTGAAATCTTCTGCGAAGGAACGACAATCCTATTATCCTCCTCCAGAGTTAGATAGGCTGGGCAATTTCGAGAGTTCGAGGGGGACAACTGCAGCTTCTGCAAAGACTCGGGCTCAATCGAGCAACTCGGAGCAGCCTCAATCAATGAAACCTTCCAAACCAAGTCCTGAAACCAAAAGGTCTTTCCATGAAGAAAGACCAACATCTTCTACGAAGGAACGGCTATTCAATCCTTCCCCGAAAATGGAAACACAAGACAACACTGAGAGTTCAGAGAAGGAGAAGACCAAGACAGTTGAGAAAGCCAGTCATGTTCACCCAAAGCTTCCCGACTATGACAACTTTGCAGCACACTTCCTTTCACTCCGACAGAATAACAACACCTTCAAGAAGAAGGCTCCCAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAAGGCAATGGGAACGAAGGACGTTAGGGTGGACGTGAAATTGAACAAGCATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGAGTCCGTATTGCACGCAAGAGGAACGACGACGAAGATGCAAAGGAAGAACTGTATTCGCTAGTCACCGTTGCAGAGATCCCAGCAGAAGGTTTGAAAGGATTAGGGACTAAGGTCATCGCTGAAGAAGACTGATCTGATCTCTCATTCCATTTGCCTTGTTACCTGGTACTTCCAACTTTTGGTGAATTTTCGGTACAAGACTTGTTTTGAGCCAGAGTTATCCTTCATTGCCCTCCCTGTGGTGCACTTGTTTATTTCACTTTGAATACACTATTATTGGAAGCAGTTGATTGATTTAGTTACATTTAGTGTTTGGATTGTGTTTTTAACTTAAGAGGTTCTTCTCTTTACACTTAATTTTGGCATCAATTTCACCTTTCTCTTCTTTAACGCCCTGTTTCTCTACCCATTGCAAATTCTCAAGTGGCAGTATGGAACGCTGATGATATGAACCCTAAGAGTTGGGATATCATCATATGATAAAATGCTGTGTATCTTCAAAAGATATAATCTGGTAGTCATGCAATCTTTATGACATCTTGTTTTAAGAATTAT

Coding sequence (CDS)

ATGCTGCATAAGAGCTTCAAGCCTGCGAAATGTAAGACATCGCTGAAGTTAGCGGTTTCGCGGATTAAGCTTTTGAGGAATAAGAAAGATGTCCATGTCAAGCAGCTGAAGGGAGAATTGGCCAAGTTGCTCGAGGCTGGACAGGATCAGACGGCTAGAATTCGGGTGGAACACTTTGTTAGAGAAGAGAAATCGAAGGAAGCGTATGAACTCATCGAAATATTTTGCGAGCTAATTGTGGCACGTATGCCAATGATCGAGTCCCAAAAAAATTGCCCGATAGACTTGAAGGAATCAGTCTCGAGTGTCATTTTTGCATCGCCCAGATGTGCAGATATTCCAGAGCTCTTGGACGTTCGTAAACACTTCAAAGCAAAATATGGAAAAGAATTTGTCTCAGCCGCAGTGGAACTACGCCCAGAATGTGGTGTGAATCGCATGTTGGTCGAAAAACTATCTGCTAAAGCACCTGATGGTCCGAGCAAAATTAAAATATTGACTAAAATTGCTGAGGAATATAACGTAAAATGGGATCCCAAATCCTTTGGTGACAACATCAACCCTCCGGCCGACTTGTTGAATGGCCCAAATACTTTTGGGAGGGCTAGTCAAATACAGATGGAGGCTATTGGTGGCCAACCCTCATTTGATCACAATAACAGGGGATCTCCTAATATTCAAGCTCCACCCGAATCCGATGAAAGGCAACGTATACCTGAAGACCCCGTCAATCGCAATTTGAGATCAAACCATCATACCCAGCAATCCAACTTTGCTGATGTCAATGCTAATCAAAGCAACTTCACTGGCCATCGAAATTCAGAAGCAAGATCTTCTGAAACTAGTGCAGAGGGGATGCATAGGCACTCGAATTCTGGTGATCAAAATAATTACGCTTCAGGCAGGCAGCATTGGAGTATGGACTTTAAGGATGCTACCTCTGCTGCGAAGGCAGCTGCTGAATCTGCAGAACTAGCAAGCCTTGCTGCCCGAGCTGCTGCAGAACTTTCTAGTCGTGGAAACCTATCCCAACCATCCTCTTCAGAGTTCCTTAAATCTTCATCTTATAATTTAAGGGCTGAAGGACCTCAAGGATATGCTAGCGGAAATTTGCGAGACCAACAGCTTCCTAAAGACCAAGTTGTCAGTGCCCCTCATAATAGTTCCATGCCGGATGATAATTGGAGAGACAATGACACAAGAAGATTTATGGGGAATGATGCCAAGAATTTTAGCTATCCATCTTCAAGTGCCAGTAACAATGATGTTAACATATCAGCAACCAATTTCAATGCGGCAGACCGTTACTCTTTCAAGAACTCATCCGAACATGGGTTTAGTGACTCCCTTGGTAGTAGTGCATCTGTGGAGAAGCAACCCAGAAAATTTGATGCTAACGCATCTGTAACCAGTTTCAATGCAGCAGATAGATCCTCTTTCAAGAATCCGTCCGATCATGGGTTCAGTGACCCTCTTGATAGTGTGGATATGCAACCCAGAAACTTTGGTTCTAACACATCTGTCACTAATTTCAGTGAATCAGATAGATACTCTCTCAAGAACCCATCTGAACCTGGGTTTAGAGACCCTCTTGGTAGTAGTACCAGCATGGAGAAACATCCTATAAACGTTGATGTAGAATATGTTAATGATCAGCCATTTGGTATGGGTTTTGAAAGAACTAGTTCCTATGGAGATTCGAGGATTGGAAATAGTTCAAATAAAGTTCCTTCCCATGAGAAGCTGGTGAACGATACTTACGAGAATCCTTTTGCCGTAGATAAACCAAATGACCATGAAAGTACTGTTGATACGAGTTTTAACGATCATGCTAGTGCGGTCTTCGATGATTACGGTCCAGATGATGATTGTGTTCCAGACTACGAATACCAGAGAAGACAATCTATTCTGGAACCTTCATCGCCTAAAGGGAAGGTGCCAATAAACTCAGCAACAGATGATACTTGGGTTTTCAAGCAAAACATGAATGACTCTCCTGAGAAGTCTGTTTCACACACGCAAATTTCTGCTGATCGTGCTTCTTTGTTTGCTGGGAATGTGGGAAGTTTTGATGATCCTTCCCATTCTGATGACTTGTTGCCGGCAACTTTTGACCATTCAGATGGACCTAGTTCTGAAAGTGAGAAAGAGCCGGAAGAATTTGAGGTCATTGGTAAAGATCACTATAGCAAATTCTCTAAGAGGCAGAATTTGCCATCTGAAAAACCAGAATGGTCTCAAAACATTAGTCATGGATCACCTGGATCTTCAGATGAGGATAATAGAAACACGCCATCTCATCGCCTCTCTTCTGAGCTTCCACTTGTCCATGAATTGAAAAAGAAAGACAGCCCACCAAGGTCTCTTGATATTCTACACGACAGTGTAATACTAGAAGAATCGACTTCAGAAAGCAACAGTGGCTTGAATTTTGGGAAACTGAAGGGTGGCCTAAGAAATCAAAAGAGTAATCCTAGGCGTTCACATGCAAGCAATTCATCAATAAGTGACTTATCATCCAAACAAGCATGTGAAAACGATGCCTCAAAAACTGCCCAGCCTACCTTAGTTTCTTCTTCGACAACCAGGACTTCGTTTAGATCAAATGCTCCCAGTGAACTATATGATGGAAGTGTAGAAGAAAAACCAGCTGAAGAGAAGGGCCCGCGAGCCAAGTTTAATAGCTTTAACTCGAATTTTGATGATTCAAAGGATAATTTCTCGGATTATACGGTTAGAAGTGATCAAGAGCGGCACAAAAACAAAGAGGTGGATGAAATATCAAAGAAGCCAGCCCCAACAAGAGTAGGAGTGAAGTATCCTGGTTTCCATGATGACGATGATTCTGAAGAAGATTCACCTGGACAAAATGTGAAAAATAGTCCTCATCGAGTTATGGGTCTTTCTAGACGGACCAAAGCATCTCCTAAAACTCCAAGTTCACGTATGGAGGACTCGTACAGGACACCCACGAGTCATGAGGATGTAAGTGAGAGAAAAGCTTCAAGGAGTTATGATGCATCCAAATCTCCATTGAAGGCAAAGACTGGAACAAGATACTCTGATCACTATGAAAGTTCAAGGCAGCCTCAATCATCTAAACCTTTCAACCAAACTCCTGAAACTAAGAGGTCCTATAATGAGGAAAGGTTGAAATCTTCTGCGAAGGAACGACAATCCTATTATCCTCCTCCAGAGTTAGATAGGCTGGGCAATTTCGAGAGTTCGAGGGGGACAACTGCAGCTTCTGCAAAGACTCGGGCTCAATCGAGCAACTCGGAGCAGCCTCAATCAATGAAACCTTCCAAACCAAGTCCTGAAACCAAAAGGTCTTTCCATGAAGAAAGACCAACATCTTCTACGAAGGAACGGCTATTCAATCCTTCCCCGAAAATGGAAACACAAGACAACACTGAGAGTTCAGAGAAGGAGAAGACCAAGACAGTTGAGAAAGCCAGTCATGTTCACCCAAAGCTTCCCGACTATGACAACTTTGCAGCACACTTCCTTTCACTCCGACAGAATAACAACACCTTCAAGAAGAAGGCTCCCAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAAGGCAATGGGAACGAAGGACGTTAGGGTGGACGTGAAATTGAACAAGCATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGAGTCCGTATTGCACGCAAGAGGAACGACGACGAAGATGCAAAGGAAGAACTGTATTCGCTAGTCACCGTTGCAGAGATCCCAGCAGAAGGTTTGAAAGGATTAGGGACTAAGGTCATCGCTGAAGAAGACTGA

Protein sequence

MLHKSFKPAKCKTSLKLAVSRIKLLRNKKDVHVKQLKGELAKLLEAGQDQTARIRVEHFVREEKSKEAYELIEIFCELIVARMPMIESQKNCPIDLKESVSSVIFASPRCADIPELLDVRKHFKAKYGKEFVSAAVELRPECGVNRMLVEKLSAKAPDGPSKIKILTKIAEEYNVKWDPKSFGDNINPPADLLNGPNTFGRASQIQMEAIGGQPSFDHNNRGSPNIQAPPESDERQRIPEDPVNRNLRSNHHTQQSNFADVNANQSNFTGHRNSEARSSETSAEGMHRHSNSGDQNNYASGRQHWSMDFKDATSAAKAAAESAELASLAARAAAELSSRGNLSQPSSSEFLKSSSYNLRAEGPQGYASGNLRDQQLPKDQVVSAPHNSSMPDDNWRDNDTRRFMGNDAKNFSYPSSSASNNDVNISATNFNAADRYSFKNSSEHGFSDSLGSSASVEKQPRKFDANASVTSFNAADRSSFKNPSDHGFSDPLDSVDMQPRNFGSNTSVTNFSESDRYSLKNPSEPGFRDPLGSSTSMEKHPINVDVEYVNDQPFGMGFERTSSYGDSRIGNSSNKVPSHEKLVNDTYENPFAVDKPNDHESTVDTSFNDHASAVFDDYGPDDDCVPDYEYQRRQSILEPSSPKGKVPINSATDDTWVFKQNMNDSPEKSVSHTQISADRASLFAGNVGSFDDPSHSDDLLPATFDHSDGPSSESEKEPEEFEVIGKDHYSKFSKRQNLPSEKPEWSQNISHGSPGSSDEDNRNTPSHRLSSELPLVHELKKKDSPPRSLDILHDSVILEESTSESNSGLNFGKLKGGLRNQKSNPRRSHASNSSISDLSSKQACENDASKTAQPTLVSSSTTRTSFRSNAPSELYDGSVEEKPAEEKGPRAKFNSFNSNFDDSKDNFSDYTVRSDQERHKNKEVDEISKKPAPTRVGVKYPGFHDDDDSEEDSPGQNVKNSPHRVMGLSRRTKASPKTPSSRMEDSYRTPTSHEDVSERKASRSYDASKSPLKAKTGTRYSDHYESSRQPQSSKPFNQTPETKRSYNEERLKSSAKERQSYYPPPELDRLGNFESSRGTTAASAKTRAQSSNSEQPQSMKPSKPSPETKRSFHEERPTSSTKERLFNPSPKMETQDNTESSEKEKTKTVEKASHVHPKLPDYDNFAAHFLSLRQNNNTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIAEED

Homology

[Close]

BLAST of CmaCh11G006740 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-39
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1170 LSLRQNNNTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRI 1229
            L  R ++ TFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNK IWSRGIRSVPRR+RVRI
Sbjct: 21   LHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRI 80

Query: 1230 ARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIAEED 1270
            ARKRNDDEDAKEELYSLVTVAEIPA+GLKGLGTK+I +ED
Sbjct: 81   ARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120

[Close]

BLAST of CmaCh11G006740 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.7e-39
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1170 LSLRQNNNTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRI 1229
            L  R +  TFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNKHIWSRGIRSVPRRIRVRI
Sbjct: 22   LHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRI 81

Query: 1230 ARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIAEED 1270
            ARKRNDDEDAKEELYSLVTVAEIP  GLKGLGT+VI EE+
Sbjct: 82   ARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121

[Close]

BLAST of CmaCh11G006740 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-38
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1170 LSLRQNNNTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRI 1229
            L  R +  TFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNK IWS+GIR  PRRIRVR+
Sbjct: 20   LHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRV 79

Query: 1230 ARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIAEED 1270
            ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTKVI EED
Sbjct: 80   ARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of CmaCh11G006740 vs. ExPASy Swiss-Prot
Match: Q9STR1 (60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.8e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1170 LSLRQNNNTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRI 1229
            L  R ++ TFKKKAPKAIKEIRKFAEK MGTKDVRVDVKLNK IWS+GIR  PRRIRVR+
Sbjct: 20   LHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRV 79

Query: 1230 ARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIAEED 1270
            ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTK+I EED
Sbjct: 80   ARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

[Close]

BLAST of CmaCh11G006740 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.8e-37
Identity = 82/100 (82.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1170 LSLRQNNNTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRI 1229
            L  R +  TFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNK IWSRGIRSVPRR+RVRI
Sbjct: 21   LHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRI 80

Query: 1230 ARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIAEED 1270
            ARKRNDDEDAKEELYSLVTVA+IPA  LKGLG ++I E+D
Sbjct: 81   ARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120

[Close]

BLAST of CmaCh11G006740 vs. TAIR 10
Match: AT2G19710.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 287.3 bits (734), Expect = 5.8e-77
Identity = 320/1007 (31.78%), Postives = 466/1007 (46.28%), Query Frame = 0


Query: 1   MLHKSFKPAKCKTSLKLAVSRIKLLRNKKDVHVKQLKGELAKLLEAGQDQTARIRVEHFV 60
           +L + FKPAKCKT+L++A SR+K+L+NKK++ +KQL+ ELA+LLE+GQ  TARIRVEH V
Sbjct: 4   VLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVEHVV 63

Query: 61  REEKSKEAYELIEIFCELIVARMPMIESQKNCPIDLKESVSSVIFASPRCADIPELLDVR 120
           REEK+  AYELI I+CEL+V R+ +IESQKNCPIDLKE+V+SV+FAS R +D+PEL ++ 
Sbjct: 64  REEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDVPELSEIF 123

Query: 121 KHFKAKYGKEFVSAAVELRPECGVNRMLVEKLSAKAPDGPSKIKILTKIAEEYNVKWDPK 180
           K F  KYGK+F ++AVELRP+ GV+R+LVEKLSAKAPDGP+K+KIL  IAEE+NV W+ +
Sbjct: 124 KQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEHNVVWEAQ 183

Query: 181 SFGDNINPPADLLNGPNTFGRASQIQMEAIGGQPSFDHNNRGSPNIQAPPE------SDE 240
           SF ++     +LLNG N+F  AS + M++     S + N    PNI AP        S E
Sbjct: 184 SFVESDPKDTELLNGANSFQPASSMNMDS-----SINSNKEQPPNIHAPATVNAHHGSSE 243

Query: 241 RQRIPEDPVNRNLRSNHHTQQSNFADVNANQSNFTGHRNSEARSSETSA-EGMHRHSNSG 300
           R   PE+      RS   + +SN    N        + +S+AR S +   EG  R+ N G
Sbjct: 244 RHHSPENSYANGGRS---SSRSN----NVTSGKADDYYHSKARPSRSRPDEGECRNPNHG 303

Query: 301 DQNNYASGRQHWSMDFKDATSAAKAAAESAELASLAARAAAELSSRGNLS-QPSSSEFLK 360
            +N+ +  +Q W  +F D+T AA+AAAE+AE AS AARAAAELS++  ++ Q S+   + 
Sbjct: 304 YENSSSRNKQKWEPEFVDSTDAARAAAEAAERASFAARAAAELSNKERMTRQDSTQSHIS 363

Query: 361 SSSYNLRAEGPQGYASGNLRDQQLPKDQVVSAPHNSSMPDDNWRDNDT------------ 420
           S+S NLR E        N + +   +D V    +     +D  R                
Sbjct: 364 SASVNLRNEPSHRRDRSNAQRESFSEDHVSPRRNVRMQYEDMDRTRQDRYDRAEQIPPVD 423

Query: 421 ----RRFMGNDAKNFSY---PSSSASNNDVNISATNFNAADRYSFKNSS---EHGFSDSL 480
               R  + N   N S+      S    D+N+  +      + S + SS      +SD  
Sbjct: 424 QPSGRHSVDNSRNNGSFGREKQPSQDETDINVGYSEDVHLRKQSSRVSSHSHSSNYSDEN 483

Query: 481 GSSASVEKQPRKFDANASVTSFNAADRSSFK--NPSDHGFSDPLDSVDMQPRNFGSNTSV 540
              +   K P   + N   T ++   +SSFK  +  DHG  D   + D            
Sbjct: 484 DLGSDFMKSPSIVEENIFATEYDHQSQSSFKDIDSHDHGHDDDAAATDNYDDYSSFFYQP 543

Query: 541 TNFSESDRYSLKNPSEPGFRDPLGSSTSMEKHPINVDVEYVNDQPFGMGFERTSSYGDSR 600
              +E + Y  +     GF   LGS TS                     F+   S    +
Sbjct: 544 KFHAEDNHYQDEIDHGVGF-SLLGSKTSA--------------SAASWSFKGDHSKSHGK 603

Query: 601 IGNSSNKV----PSHEKLVNDTYENPFAVDKPNDHESTVDTSFNDHASAVFDDYGPDDDC 660
             +SS++V    PS     + +   P +  +P+ H             A FD+YGP+ + 
Sbjct: 604 HSSSSSQVFQENPSSRLFDDVSTSPPASYHEPDPH-------------AKFDNYGPNSES 663

Query: 661 VPDY-------EYQRRQSILEPSSPKGKVPINSATDDTWVFKQNMNDSPEKSVSHTQISA 720
             D        +   R ++    S K KV  ++  +   VF  +  +  + S +  +  +
Sbjct: 664 DGDQPIDKVSGDVHERGNLTSDRSHKFKVSDSAGHE---VFPLDTEEHTDNSRTREESDS 723

Query: 721 DRASLFAGNVGSFDDPSHSDDLLPATFDHSDGPSSESEKEPEEFEVIG----KDHYS-KF 780
           D        +G+      +   LP         SS++EKE  + +  G    KD YS K 
Sbjct: 724 DSEPQLGLRLGALAGGFRNKKTLPPY--RMSSASSKAEKEYIQIDDFGQSSRKDLYSKKA 783

Query: 781 SKRQNLPSEKPEWSQNISHGSPGSSDEDNRN--------TPSHRLSSELPLVHELKKKDS 840
           S  +  PS  P          P SSDED+ +        T S  L S   + H+    DS
Sbjct: 784 SNTETRPSFMPP--------HPSSSDEDDSDMQHPGRTETKSDSLYSHSRVNHD----DS 843

Query: 841 PPRSLDILHDSVILEESTSESNSGLNFGKLKGGLRNQKSNPRRSHASNSSISDLSSKQAC 900
               L     S I E S   S           G+R QK    +   S SS      ++  
Sbjct: 844 EEEKLPTRSSSRIQERSHKPST----------GIRVQKRTNFKMPVSASS----EDEEEV 903

Query: 901 ENDASK-TAQP--TLVSSSTTRTSFRSNAPSELYDGSVEEKPAEEKGPRAKFNSFNSNFD 949
           E +A++  A+P  T     + RT  +S A +E +   V  K  ++               
Sbjct: 904 EREAARINAKPNKTTGYGFSLRTKGQSKA-NEKHSLPVTTKKTDK--------------- 923

[Close]

BLAST of CmaCh11G006740 vs. TAIR 10
Match: AT4G29440.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-65
Identity = 372/1258 (29.57%), Postives = 567/1258 (45.07%), Query Frame = 0


Query: 1    MLHKSFKPAKCKTSLKLAVSRIKLLRNKKDVHVKQLKGELAKLLEAGQDQTARIRVEHFV 60
            +LH+SFKPAKCK +L++A SR+K+L+NKKD  +KQL+ ELA LLE+GQ QTA+IRVEH V
Sbjct: 4    VLHRSFKPAKCKIALQMAASRLKILKNKKDTQIKQLRRELAHLLESGQTQTAKIRVEHVV 63

Query: 61   REEKSKEAYELIEIFCELIVARMPMIESQKNCPIDLKESVSSVIFASPRCADIPELLDVR 120
            REEK+  AYEL+ I+CEL+VAR+ +I+SQK CP DLKE+V+SV++AS R  D+ EL D+ 
Sbjct: 64   REEKTVAAYELVGIYCELLVARLGVIDSQKTCPNDLKEAVASVLYASQRLTDVGELSDIV 123

Query: 121  KHFKAKYGKEFVSAAVELRPECGVNRMLVEKLSAKAPDGPSKIKILTKIAEEYNVKWDPK 180
            KHF AKYGK+FVSAA+ L+P+ GV+R+LVEKLS KAPDGP+KIKILT+IA ++NV W+ +
Sbjct: 124  KHFSAKYGKDFVSAAIGLQPDSGVSRLLVEKLSVKAPDGPTKIKILTEIATQHNVTWEAE 183

Query: 181  SFGDNINPPADLLNGPNTFGRASQIQMEAIG--GQPSFDHNNRGSPNIQAPPESDERQRI 240
            S  +  + P + ++     G +S +   A G   + S   NN+  P  QA    +     
Sbjct: 184  SLVE--SDPKETMSAS---GASSSVSQPATGIKSESSRIQNNQ-PPVFQAAATVN----- 243

Query: 241  PEDPVNRNLRSNHHTQQSNFADVNANQSNFTGHRNSEARSSETSAEGM-HRHSNSGDQNN 300
                V++N  +      S     + N      H + + + S    +G  HR  N G  + 
Sbjct: 244  ----VSQNSYATDGRSSSRMTSTDFNVGKTPDHYHQDPKPSGDRVDGREHRDHNPGHGDT 303

Query: 301  YASGRQHWSMDFKDATSAAKAAAESAELASLAARAAAELSSRGN-LSQPSSSEFLKSSSY 360
                   +   F DATSAA+AAAESAE AS AAR AAELSS+   +   +S+E   SSSY
Sbjct: 304  -----SPFETKFVDATSAARAAAESAERASFAARRAAELSSKERMMMMQNSTESRNSSSY 363

Query: 361  -NLRAEGPQG-YASGNLRDQQLPKDQVVSAPHNSSMPDDNWRDNDTRRFMGNDAKNFSYP 420
             NLR+  P    +S N++     K++++ +  N+   D   +   T R            
Sbjct: 364  ENLRSNPPHSRTSSSNMQGGGFGKEELLKS--NNRQVD---QSTTTTR------------ 423

Query: 421  SSSASNNDVNISATNFNAADRYSFKNSSEHGFSDSLGSSASVEKQPRKFDAN----ASVT 480
             + +S   V+  + N +    +S +NS E   +DS       ++QP   D N    A V 
Sbjct: 424  -AESSKKTVDELSENTSWRRGHSRENSLEMRPNDSFAKIGREKQQPGMDDINLSSSADVL 483

Query: 481  SFNAADRSSFKNPSDHGFSD-----PLDSVDMQPRNFGSNTSVTNFSESDRYSLKNP--- 540
            +   + R+S  +PS + FSD      LD +D  P  F  N   +   + + Y+  +P   
Sbjct: 484  NKKQSSRASSHSPSSN-FSDDNDVTALDHID-SPSIFEENKFQSTVGDRESYN-DSPVVV 543

Query: 541  SEPGFRDPLGSSTSMEKHPINVDVEYVNDQPFGMGFERTSSYGDSRIGNSSNKVPSHEKL 600
              P F D    S+  +K   + +  Y ++   G+GF        S +G+SS         
Sbjct: 544  VAPAFDD---YSSFFDKPQFDTEDAYHDEPEQGLGF--------SLLGSSS--------- 603

Query: 601  VNDTYENPFAVDKPNDHESTVDTSFNDHASAVFDDYGPDDDCVPDYEYQRRQSILEPSSP 660
                        K +DH  T  +S++                            LE    
Sbjct: 604  ------------KTSDHMPTEISSWS----------------------------LEGHKD 663

Query: 661  KGKVPINSATDDTWVFKQNMNDSPEKSVSHTQISADRASLFAGNVGSFDDPSHSDDLLPA 720
             GK+   S+   + V ++    SP                      +FDD   S    P 
Sbjct: 664  LGKL---SSASTSQVLEKEKPSSPP---------------------TFDDGPTS----PP 723

Query: 721  TFDHSDGPSSESEKEPEEFEVIGKDHYSKFSKRQNLPSEKPEWSQNISHGSPGSSDEDNR 780
               H   PS++ +    + E   +D+  + S R      K + +   SH S G  D    
Sbjct: 724  ASLHEPEPSAKFDDYDRDSE-SEEDNLGRLSGR---AEGKSKLTAQKSHMSEGPDD---- 783

Query: 781  NTPSHRLSSELPLVHELKKKDSPPRSLDILHDSVILEESTSESNSGLNFGKLKGGLRNQK 840
                            L +   P  + D   DS   EES +E+ +GL FG L  GL N+ 
Sbjct: 784  ----------------LGRYFFPSDTEDQGDDSKTQEESDAETPTGLKFGPLASGLENET 843

Query: 841  ------SNPRRSHASNSSISDLSSKQACENDASKTAQPTLVSSSTTR----TSFRSNA-- 900
                  S+P R   S+ SI +       E D S+++     SSS+ R    T   SN+  
Sbjct: 844  TLPSYGSSPPRDKTSSKSIKEY---LPTEVDPSRSSSLQTASSSSIRNELYTQKASNSDK 903

Query: 901  -PSEL-YDGSVEEKPAEEKGPRAKFNSFNSNFDDSKDN----FSDYTVRSDQE----RHK 960
             PS +  D S  +  ++ + P+     +     +S+       S  + +  +E    R  
Sbjct: 904  RPSSIPPDSSSSDDESDMELPKRVSFRYQEKRTESRTRPTHLHSGVSHKDLEEEIPTRAS 963

Query: 961  NKEVDEISKKPAPTRVGVKYPGFH-----DDDDSEEDSPGQNVKNSPHRVMGLSRRTKAS 1020
             +  D  + K  P      Y  FH     D+D+ E      +++  P+  + +SRRTK  
Sbjct: 964  TRSQDRRTHKTTPASASASY--FHTMSSDDEDEKEVHRDTAHIQTRPY--ISISRRTKGQ 1023

Query: 1021 PKTPS---SRMED-SYRTPTSHEDVSERKASRSYDASKSPLKAKTGTRYSDHYESS---- 1080
             + PS   ++++  S+   +  +   E K       S S L     T    H + S    
Sbjct: 1024 ERRPSLVTAKIDKVSFDEESPPKLSPEAKPLTKQQGSASSLSYLPKTEKVSHDQESHPKL 1083

Query: 1081 --------RQPQSSKPFNQTPETKRSYNEE--------RLKSSAKER---QSYYPPPELD 1140
                    +Q  S+   +  P+T ++  ++        + K +AK+R    S    P+ D
Sbjct: 1084 GLGAKPLIKQQGSASSLSFLPKTNKASPDQDSPPKLVPKEKPAAKQRGSASSLSFLPKTD 1090

Query: 1141 RLGNFESSRGTTAASAKTRAQ-----SSNSEQPQSMK-------PSKPSPETKRSFHEER 1175
            +    + S        K  A+     +S+S  P++ K       PSK +PE K    +E 
Sbjct: 1144 KASPDQDSPPKLLPKEKPAAKQQGSATSSSSLPKTEKISHYRESPSKLTPEAKSMAKQEG 1090

[Close]

BLAST of CmaCh11G006740 vs. TAIR 10
Match: AT1G34220.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-57
Identity = 197/615 (32.03%), Postives = 302/615 (49.11%), Query Frame = 0


Query: 3   HKSFKPAKCKTSLKLAVSRIKLLRNKKDVHVKQLKGELAKLLEAGQDQTARIRVEHFVRE 62
           +K FK AKCKT LKL + RIKL+RN+++  +KQ++ E+AKLLE GQ+ TARIRVEH +RE
Sbjct: 9   NKGFKAAKCKTLLKLTIPRIKLIRNRREAQIKQMRREIAKLLETGQEATARIRVEHIIRE 68

Query: 63  EKSKEAYELIEIFCELIVARMPMIESQKNCPIDLKESVSSVIFASPRCADIPELLDVRKH 122
           EK   A E++E+FCELI  R+P+IE+Q+ CP+DLKE++SSV FA+PRC+D+ EL  V+  
Sbjct: 69  EKMMAAQEILELFCELIAVRLPIIEAQRECPLDLKEAISSVCFAAPRCSDLTELQQVQIL 128

Query: 123 FKAKYGKEFVSAAVELRPECGVNRMLVEKLSAKAPDGPSKIKILTKIAEEYNVKWDPKSF 182
           F +KYGKEFV+AA EL+P+ GVNR LVE LS +AP   +K+K+L +IAEE+ + WDP S 
Sbjct: 129 FVSKYGKEFVAAASELKPDSGVNRKLVELLSVRAPSPETKLKLLKEIAEEHELDWDPAST 188

Query: 183 -GDNINPPADLLNGPNTFGRASQIQMEAIGGQPSFDHNNRGSPNIQAPPESDERQR---- 242
             D      DLL+GP  FG  S++ +      P   +      ++ A  E  +       
Sbjct: 189 ETDLFKSHEDLLDGPKQFGGGSKLPL------PEEQNEKTNLTSLSAAKEKSDSDSEYDI 248

Query: 243 --IPEDP------------VN-----RNLRSNHHTQQSNFADVNANQSNFTGHRNSE-AR 302
              PE P            VN     ++    H +    F   NA        R+   A+
Sbjct: 249 LDFPEVPNVLLRPTPGATSVNAPDAAKSASYEHTSHDLPFDSENAGVEKTASKRDEHPAK 308

Query: 303 SSETSAEGMHRH---SNSGDQNNYA--------------------SGRQHWSMDFKDATS 362
           +S+T  EG         S ++ NY+                    + R+    D +D   
Sbjct: 309 ASKTVVEGQQSSPILMESFEKKNYSPPSIDAVGPIPTKESGASRDTPRKISDGDLQDVLM 368

Query: 363 AAKAAAESAELASLAARAAAELSSR--GNLSQPSSSEFLKSSSYN-----------LRAE 422
           AA+AAA+SAE A+ AAR+AA L+      L++ +S ++ +S S N              +
Sbjct: 369 AAQAAADSAERAASAARSAASLAQLRINELTRKTSDQYPESPSENPFHAPSMGNLQFDHQ 428

Query: 423 GPQGYASGNLRD-QQLPKDQVVSAPHNSSMPD-----------------DNWRDNDTRRF 482
                +SG+L + Q+     + ++  N+  P                   ++ D   +RF
Sbjct: 429 NSSASSSGDLTELQRAETSSLFNSEQNNQQPQTHSSMEKPQFDRQNSSFSSYGDLTPQRF 488

Query: 483 MGNDAKNFSYPSSSASNNDVNISATNFNAADRYSF--KNSSEHGFSDSLGSSASVEKQPR 537
              +   F + +SS SN D +++   F++ ++  F  +NSS   + D         ++P+
Sbjct: 489 HSMEKPQFDHQNSSGSNYD-DLTPQRFSSLEKPQFDHQNSSGSNYDDLTPHRFPSMEKPQ 548

[Close]

BLAST of CmaCh11G006740 vs. TAIR 10
Match: AT4G29440.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 214.9 bits (546), Expect = 3.7e-55
Identity = 356/1232 (28.90%), Postives = 543/1232 (44.07%), Query Frame = 0


Query: 27   NKKDVHVKQLKGELAKLLEAGQDQTARIRVEHFVREEKSKEAYELIEIFCELIVARMPMI 86
            NKKD  +KQL+ ELA LLE+GQ QTA+IRVEH VREEK+  AYEL+ I+CEL+VAR+ +I
Sbjct: 2    NKKDTQIKQLRRELAHLLESGQTQTAKIRVEHVVREEKTVAAYELVGIYCELLVARLGVI 61

Query: 87   ESQKNCPIDLKESVSSVIFASPRCADIPELLDVRKHFKAKYGKEFVSAAVELRPECGVNR 146
            +SQK CP DLKE+V+SV++AS R  D+ EL D+ KHF AKYGK+FVSAA+ L+P+ GV+R
Sbjct: 62   DSQKTCPNDLKEAVASVLYASQRLTDVGELSDIVKHFSAKYGKDFVSAAIGLQPDSGVSR 121

Query: 147  MLVEKLSAKAPDGPSKIKILTKIAEEYNVKWDPKSFGDNINPPADLLNGPNTFGRASQIQ 206
            +LVEKLS KAPDGP+KIKILT+IA ++NV W+ +S  +  + P + ++     G +S + 
Sbjct: 122  LLVEKLSVKAPDGPTKIKILTEIATQHNVTWEAESLVE--SDPKETMSAS---GASSSVS 181

Query: 207  MEAIG--GQPSFDHNNRGSPNIQAPPESDERQRIPEDPVNRNLRSNHHTQQSNFADVNAN 266
              A G   + S   NN+  P  QA    +         V++N  +      S     + N
Sbjct: 182  QPATGIKSESSRIQNNQ-PPVFQAAATVN---------VSQNSYATDGRSSSRMTSTDFN 241

Query: 267  QSNFTGHRNSEARSSETSAEGM-HRHSNSGDQNNYASGRQHWSMDFKDATSAAKAAAESA 326
                  H + + + S    +G  HR  N G  +        +   F DATSAA+AAAESA
Sbjct: 242  VGKTPDHYHQDPKPSGDRVDGREHRDHNPGHGDT-----SPFETKFVDATSAARAAAESA 301

Query: 327  ELASLAARAAAELSSRGN-LSQPSSSEFLKSSSY-NLRAEGPQG-YASGNLRDQQLPKDQ 386
            E AS AAR AAELSS+   +   +S+E   SSSY NLR+  P    +S N++     K++
Sbjct: 302  ERASFAARRAAELSSKERMMMMQNSTESRNSSSYENLRSNPPHSRTSSSNMQGGGFGKEE 361

Query: 387  VVSAPHNSSMPDDNWRDNDTRRFMGNDAKNFSYPSSSASNNDVNISATNFNAADRYSFKN 446
            ++ +  N+   D   +   T R             + +S   V+  + N +    +S +N
Sbjct: 362  LLKS--NNRQVD---QSTTTTR-------------AESSKKTVDELSENTSWRRGHSREN 421

Query: 447  SSEHGFSDSLGSSASVEKQPRKFDAN----ASVTSFNAADRSSFKNPSDHGFSD-----P 506
            S E   +DS       ++QP   D N    A V +   + R+S  +PS + FSD      
Sbjct: 422  SLEMRPNDSFAKIGREKQQPGMDDINLSSSADVLNKKQSSRASSHSPSSN-FSDDNDVTA 481

Query: 507  LDSVDMQPRNFGSNTSVTNFSESDRYSLKNP---SEPGFRDPLGSSTSMEKHPINVDVEY 566
            LD +D  P  F  N   +   + + Y+  +P     P F D    S+  +K   + +  Y
Sbjct: 482  LDHID-SPSIFEENKFQSTVGDRESYN-DSPVVVVAPAFDD---YSSFFDKPQFDTEDAY 541

Query: 567  VNDQPFGMGFERTSSYGDSRIGNSSNKVPSHEKLVNDTYENPFAVDKPNDHESTVDTSFN 626
             ++   G+GF        S +G+SS                     K +DH  T  +S++
Sbjct: 542  HDEPEQGLGF--------SLLGSSS---------------------KTSDHMPTEISSWS 601

Query: 627  DHASAVFDDYGPDDDCVPDYEYQRRQSILEPSSPKGKVPINSATDDTWVFKQNMNDSPEK 686
                                        LE     GK+   S+   + V ++    SP  
Sbjct: 602  ----------------------------LEGHKDLGKL---SSASTSQVLEKEKPSSPP- 661

Query: 687  SVSHTQISADRASLFAGNVGSFDDPSHSDDLLPATFDHSDGPSSESEKEPEEFEVIGKDH 746
                                +FDD   S    P    H   PS++ +    + E   +D+
Sbjct: 662  --------------------TFDDGPTS----PPASLHEPEPSAKFDDYDRDSE-SEEDN 721

Query: 747  YSKFSKRQNLPSEKPEWSQNISHGSPGSSDEDNRNTPSHRLSSELPLVHELKKKDSPPRS 806
              + S R      K + +   SH S G  D                    L +   P  +
Sbjct: 722  LGRLSGR---AEGKSKLTAQKSHMSEGPDD--------------------LGRYFFPSDT 781

Query: 807  LDILHDSVILEESTSESNSGLNFGKLKGGLRNQK------SNPRRSHASNSSISDLSSKQ 866
             D   DS   EES +E+ +GL FG L  GL N+       S+P R   S+ SI +     
Sbjct: 782  EDQGDDSKTQEESDAETPTGLKFGPLASGLENETTLPSYGSSPPRDKTSSKSIKEY---L 841

Query: 867  ACENDASKTAQPTLVSSSTTR----TSFRSNA---PSEL-YDGSVEEKPAEEKGPRAKFN 926
              E D S+++     SSS+ R    T   SN+   PS +  D S  +  ++ + P+    
Sbjct: 842  PTEVDPSRSSSLQTASSSSIRNELYTQKASNSDKRPSSIPPDSSSSDDESDMELPKRVSF 901

Query: 927  SFNSNFDDSKDN----FSDYTVRSDQE----RHKNKEVDEISKKPAPTRVGVKYPGFH-- 986
             +     +S+       S  + +  +E    R   +  D  + K  P      Y  FH  
Sbjct: 902  RYQEKRTESRTRPTHLHSGVSHKDLEEEIPTRASTRSQDRRTHKTTPASASASY--FHTM 961

Query: 987  ---DDDDSEEDSPGQNVKNSPHRVMGLSRRTKASPKTPS---SRMED-SYRTPTSHEDVS 1046
               D+D+ E      +++  P+  + +SRRTK   + PS   ++++  S+   +  +   
Sbjct: 962  SSDDEDEKEVHRDTAHIQTRPY--ISISRRTKGQERRPSLVTAKIDKVSFDEESPPKLSP 1021

Query: 1047 ERKASRSYDASKSPLKAKTGTRYSDHYESS------------RQPQSSKPFNQTPETKRS 1106
            E K       S S L     T    H + S            +Q  S+   +  P+T ++
Sbjct: 1022 EAKPLTKQQGSASSLSYLPKTEKVSHDQESHPKLGLGAKPLIKQQGSASSLSFLPKTNKA 1062

Query: 1107 YNEE--------RLKSSAKER---QSYYPPPELDRLGNFESSRGTTAASAKTRAQ----- 1166
              ++        + K +AK+R    S    P+ D+    + S        K  A+     
Sbjct: 1082 SPDQDSPPKLVPKEKPAAKQRGSASSLSFLPKTDKASPDQDSPPKLLPKEKPAAKQQGSA 1062

Query: 1167 SSNSEQPQSMK-------PSKPSPETKRSFHEERPTSSTKERLFNPSPKMETQDNTESSE 1175
            +S+S  P++ K       PSK +PE K    +E   SS+     +  PK  T  + E+  
Sbjct: 1142 TSSSSLPKTEKISHYRESPSKLTPEAKSMAKQEGLASSS-----SSLPKTVTSPDPETPA 1062

[Close]

BLAST of CmaCh11G006740 vs. TAIR 10
Match: AT4G35730.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-53
Identity = 131/335 (39.10%), Postives = 204/335 (60.90%), Query Frame = 0


Query: 1   MLHKSFKPAKCKTSLKLAVSRIKLLRNKKDVHVKQLKGELAKLLEAGQDQTARIRVEHFV 60
           +  + F  +KCKT+ K+AV+RIKL+RNK+ V VKQ++ ++A LL++GQD TARIRVEH +
Sbjct: 21  LFRRGFNSSKCKTAAKMAVARIKLIRNKRLVVVKQMRRDIAVLLQSGQDATARIRVEHVI 80

Query: 61  REEKSKEAYELIEIFCELIVARMPMIESQKNCPIDLKESVSSVIFASPRCADIPELLDVR 120
           RE+  + A E+IE+FCELIV+R+ +I  QK CP+DLKE ++S+IFA+PRC++IPEL D+R
Sbjct: 81  REQNIQAANEIIELFCELIVSRLTIITKQKQCPVDLKEGIASLIFAAPRCSEIPELGDLR 140

Query: 121 KHFKAKYGKEFVSAAVELRPECGVNRMLVEKLSAKAPDGPSKIKILTKIAEEYNVKWD-P 180
             F  KYGK+FVSAA +LRP CGVNRML++KLS + P G  K+KI+ +IA+E+ V WD  
Sbjct: 141 DIFAKKYGKDFVSAATDLRPSCGVNRMLIDKLSVRNPGGEYKLKIMKEIAKEFQVDWDTT 200

Query: 181 KSFGDNINPPADLLNGPNTFGRASQIQMEAIGGQPSFDHNNRGSPNIQAPPESDERQRIP 240
           ++  + + P  + ++GP  F  AS + +            NR + N       D  + +P
Sbjct: 201 ETEQELLKPQEESIDGPRKFVSASSLPV------------NRAAIN----EPIDPTKAVP 260

Query: 241 EDPVNRNLRSNHH---------TQQSNFADVNANQSNFTGHR--NSEARSSETSAEGMH- 300
               + ++ +++H         T+ +  A   A  ++    R  +S    S +S    H 
Sbjct: 261 RSTSSMSINTHYHDTESAAEAATELAKQAVAAAQVASLLATRRDSSNKEFSVSSDHSTHQ 320

Query: 301 RHSNSGDQNNYASGRQHWSMDFKDATSAAKAAAES 323
           + S   D +++  G +  S D + ++  AK  AE+
Sbjct: 321 KDSQYMDHHHHHPGSRRQSRDSETSSYYAKPGAEN 339

The following BLAST results are available for this feature:

BLAST of CmaCh11G006740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46290	1.2e-39	86.00	60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1	[more]
Q9M573	4.7e-39	87.00	60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1	[more]
P51420	1.8e-38	85.00	60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2	[more]
Q9STR1	6.8e-38	83.00	60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1	[more]
Q9MAV7	9.8e-37	82.00	60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1	[more]

BLAST of CmaCh11G006740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19710.1	5.8e-77	31.78	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT4G29440.1	1.8e-65	29.57	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT1G34220.2	8.7e-57	32.03	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT4G29440.2	3.7e-55	28.90	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT4G35730.1	5.9e-53	39.10	Regulator of Vps4 activity in the MVB pathway protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 1164..1242 e-value: 8.9E-31 score: 118.2
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 1177..1241 e-value: 4.7E-29 score: 100.4
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 1178..1241 e-value: 5.37681E-30 score: 111.892
IPR042277	Vacuolar protein sorting-associated protein IST1-like	GENE3D	1.20.1260.60		coord: 1..185 e-value: 1.2E-73 score: 248.6
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	3.10.440.10		coord: 1169..1269 e-value: 4.6E-36 score: 125.1
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	54575	Ribosomal protein L31e	coord: 1178..1241
IPR005061	Vacuolar protein sorting-associated protein Ist1	PFAM	PF03398	Ist1	coord: 12..176 e-value: 2.8E-57 score: 193.2
IPR005061	Vacuolar protein sorting-associated protein Ist1	PANTHER	PTHR12161	IST1 FAMILY MEMBER	coord: 3..1176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1106..1121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1073..1105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 906..932
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1136..1154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 476..538
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 987..1006
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 441..456
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 739..760
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..422
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1023..1042
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 441..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 709..738
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 821..872
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 498..519
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 684..1154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 773..789
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..276
None	No IPR available	PANTHER	PTHR12161:SF13	REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN	coord: 3..1176
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 1203..1217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G006740.1	CmaCh11G006740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome