CmaCh09G006680 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G006680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	histidine-rich glycoprotein-like
Location	Cma_Chr09: 3155878 .. 3156596 (-)
RNA-Seq Expression	CmaCh09G006680
Synteny	CmaCh09G006680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATAACTCACCAAAAAAATGGCCTACTCTAAGACCTTCCTCCTTCTCGGCCTCCTCCTCGCTCTTCTCTTCGTCTCCTCTCATGTCTCGGCTCGCTTCCTCGGTTAGTTCACTCGACCCTGTTAGATGAACACGACTCTCTACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGAGTGTCCTCAAAAGGGCTCATACCAATGGAGATAGTATTATTTGATTATAAACTCATGATCATTCTCTACCGATGTAGGACTTTTATTATCCAACAGACCCTAAATTCATTTTATTTATTTATGCTTAATATGCACGTACTTTTATTGTGTATATTGATTTTTTTTTTTTTAATTAATTTTGTATGTAGAGGAAAAGAAAAGTGATGTAGAGAGTGACAGTCACGGGCACCATGATCATGGGCACCACGACCACGGTCACCATGGCCATGACGCTAATGTTGATGGCTTGGATGGTCACCATGGACACCACGGCGGAGGACATGGTGGACACCATGGTCATGATGCTGACGTTGATGACTTAGACGGACACCATGGCCACCACGACCACCACGACCACCACGACCACCACGACCACCACGACCATCACGACCACCACGACCACCACGACCATCACGACCACCACGACCATCATGGACACCACGGTCACGACCATGATGCAAAAATGGAAGACGTTAAGAATTAG

mRNA sequence

CCATAACTCACCAAAAAAATGGCCTACTCTAAGACCTTCCTCCTTCTCGGCCTCCTCCTCGCTCTTCTCTTCGTCTCCTCTCATGTCTCGGCTCGCTTCCTCGAGGAAAAGAAAAGTGATGTAGAGAGTGACAGTCACGGGCACCATGATCATGGGCACCACGACCACGGTCACCATGGCCATGACGCTAATGTTGATGGCTTGGATGGTCACCATGGACACCACGGCGGAGGACATGGTGGACACCATGGTCATGATGCTGACGTTGATGACTTAGACGGACACCATGGCCACCACGACCACCACGACCACCACGACCACCACGACCACCACGACCATCACGACCACCACGACCACCACGACCATCACGACCACCACGACCATCATGGACACCACGGTCACGACCATGATGCAAAAATGGAAGACGTTAAGAATTAG

Coding sequence (CDS)

ATGGCCTACTCTAAGACCTTCCTCCTTCTCGGCCTCCTCCTCGCTCTTCTCTTCGTCTCCTCTCATGTCTCGGCTCGCTTCCTCGAGGAAAAGAAAAGTGATGTAGAGAGTGACAGTCACGGGCACCATGATCATGGGCACCACGACCACGGTCACCATGGCCATGACGCTAATGTTGATGGCTTGGATGGTCACCATGGACACCACGGCGGAGGACATGGTGGACACCATGGTCATGATGCTGACGTTGATGACTTAGACGGACACCATGGCCACCACGACCACCACGACCACCACGACCACCACGACCACCACGACCATCACGACCACCACGACCACCACGACCATCACGACCACCACGACCATCATGGACACCACGGTCACGACCATGATGCAAAAATGGAAGACGTTAAGAATTAG

Protein sequence

MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVDGLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHHDHHGHHGHDHDAKMEDVKN

Homology

[Close]

BLAST of CmaCh09G006680 vs. ExPASy TrEMBL
Match: A0A6J1IKT3 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.7e-60
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60
           MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60

Query: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH 120
           GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH
Sbjct: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH 120

Query: 121 DHHGHHGHDHDAKMEDVKN 140
           DHHGHHGHDHDAKMEDVKN
Sbjct: 121 DHHGHHGHDHDAKMEDVKN 139

[Close]

BLAST of CmaCh09G006680 vs. ExPASy TrEMBL
Match: A0A6J1F6Z7 (histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.3e-49
Identity = 119/139 (85.61%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60
           MAYSKTFLLLGLLLALLF+SSHVSARFLEEKKSDVESD HGHHDHGHHDHGHHGHDANVD
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHGHDANVD 60

Query: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH 120
           GLDGHH HHGGGHGGHHGHDAD+DDLDGHHG               HHDHHDHHDHHDHH
Sbjct: 61  GLDGHHEHHGGGHGGHHGHDADIDDLDGHHG---------------HHDHHDHHDHHDHH 120

Query: 121 DHHGHHGHDHDAKMEDVKN 140
           DHHGHHGHDHDAK EDVKN
Sbjct: 121 DHHGHHGHDHDAKTEDVKN 124

[Close]

BLAST of CmaCh09G006680 vs. ExPASy TrEMBL
Match: A0A6J1CBC6 (histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=3673 GN=LOC111009957 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 83/127 (65.35%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGH------------HDHGHH 60
           MAYSKT LLLGLLLALLFVSSHVSAR L EKK  VE D H H            HDHGHH
Sbjct: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60

Query: 61  DHGH-----HGHDANVDGLDGHHGHHGGGHGGH----HGHDADVDDLDGHHGHHDHHDHH 107
           DH H     H HDA++D LD HHGHHGGGHGGH    HGHDAD+D LD HHGHHD H HH
Sbjct: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHD-HGHH 120

[Close]

BLAST of CmaCh09G006680 vs. NCBI nr
Match: XP_022975988.1 (histidine-rich glycoprotein-like [Cucurbita maxima])

HSP 1 Score: 241.1 bits (614), Expect = 5.6e-60
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60
           MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60

Query: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH 120
           GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH
Sbjct: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH 120

Query: 121 DHHGHHGHDHDAKMEDVKN 140
           DHHGHHGHDHDAKMEDVKN
Sbjct: 121 DHHGHHGHDHDAKMEDVKN 139

[Close]

BLAST of CmaCh09G006680 vs. NCBI nr
Match: XP_023536482.1 (histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo] >XP_023536484.1 histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 8.7e-53
Identity = 128/139 (92.09%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60
           MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESD HGHHDHGHHDHGHHGHDANVD
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHGHDANVD 60

Query: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH 120
           GLDGHHGHHGGGHGGHHGHDADVDDLDGHHG         HHDHHDHHDHHDHHDHHDHH
Sbjct: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHG---------HHDHHDHHDHHDHHDHHDHH 120

Query: 121 DHHGHHGHDHDAKMEDVKN 140
           DHHGHHGHDHDAK EDVKN
Sbjct: 121 DHHGHHGHDHDAKTEDVKN 130

[Close]

BLAST of CmaCh09G006680 vs. NCBI nr
Match: KAG7024647.1 (hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 3.7e-51
Identity = 128/144 (88.89%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESD-----SHGHHDHGHHDHGHHGH 60
           MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESD      HGHHDHGHHDHGHHGH
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGHHGH 60

Query: 61  DANVDGLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHD 120
           DANVDGLDGHHGHHGGGHGGHHGHDADVDDLDGHHG         HHDHHDHHDHHDHHD
Sbjct: 61  DANVDGLDGHHGHHGGGHGGHHGHDADVDDLDGHHG---------HHDHHDHHDHHDHHD 120

Query: 121 HHDHHDHHGHHGHDHDAKMEDVKN 140
           HHDHHDHHGHHGHDHDAK+EDVKN
Sbjct: 121 HHDHHDHHGHHGHDHDAKIEDVKN 135

[Close]

BLAST of CmaCh09G006680 vs. NCBI nr
Match: KAG6591765.1 (hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51
Identity = 127/144 (88.19%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESD-----SHGHHDHGHHDHGHHGH 60
           MAYSKTFLLLGLLLALLF+SSHVSARFLEEKKSDVESD      HGHHDHGHHDHGHHGH
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGHHGH 60

Query: 61  DANVDGLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHD 120
           DANVDGLDGHHGHHGGGHGGHHGHDADVDDLDGHHG         HHDHHDHHDHHDHHD
Sbjct: 61  DANVDGLDGHHGHHGGGHGGHHGHDADVDDLDGHHG---------HHDHHDHHDHHDHHD 120

Query: 121 HHDHHDHHGHHGHDHDAKMEDVKN 140
           HHDHHDHHGHHGHDHDAK+EDVKN
Sbjct: 121 HHDHHDHHGHHGHDHDAKIEDVKN 135

[Close]

BLAST of CmaCh09G006680 vs. NCBI nr
Match: XP_022935989.1 (histidine-rich glycoprotein-like [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 119/139 (85.61%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60
           MAYSKTFLLLGLLLALLF+SSHVSARFLEEKKSDVESD HGHHDHGHHDHGHHGHDANVD
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHGHDANVD 60

Query: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHDHHDHHDHHDHH 120
           GLDGHH HHGGGHGGHHGHDAD+DDLDGHHG               HHDHHDHHDHHDHH
Sbjct: 61  GLDGHHEHHGGGHGGHHGHDADIDDLDGHHG---------------HHDHHDHHDHHDHH 120

Query: 121 DHHGHHGHDHDAKMEDVKN 140
           DHHGHHGHDHDAK EDVKN
Sbjct: 121 DHHGHHGHDHDAKTEDVKN 124

The following BLAST results are available for this feature:

BLAST of CmaCh09G006680 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G006680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKT3	2.7e-60	100.00	histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=...	[more]
A0A6J1F6Z7	6.3e-49	85.61	histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 P...	[more]
A0A6J1CBC6	1.9e-21	65.35	histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=367...	[more]

BLAST of CmaCh09G006680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022975988.1	5.6e-60	100.00	histidine-rich glycoprotein-like [Cucurbita maxima]	[more]
XP_023536482.1	8.7e-53	92.09	histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo] >XP_023536484.1 hi...	[more]
KAG7024647.1	3.7e-51	88.89	hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591765.1	4.8e-51	88.19	hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935989.1	1.3e-48	85.61	histidine-rich glycoprotein-like [Cucurbita moschata]	[more]

BLAST of CmaCh09G006680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G006680.1	CmaCh09G006680.1	mRNA