CmaCh06G017460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Alpha/Beta hydrolase fold containing protein
Location	Cma_Chr06: 10662698 .. 10665643 (+)
RNA-Seq Expression	CmaCh06G017460
Synteny	CmaCh06G017460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGTGTGCTGAAACCTACGCACATTCATCGGCATCCGCGTTCTCATCCCATATTCCATCAGTCACAACGACATCGCAACTTCAAGCGCTCCATAGCGCAAATTGGATATCAACCGCGCCGTCAGTTCATTCGAATCACCCAAATTAAGTGCAAGTATGAAGATTCTGGCAACGAACAGCCACCTCGTTCTACTCCCACTGCCTTGCAACTCTACTCCGACATCGAGAGGTTTCCACCTTTCTTTCCCTTCTGCTGCGTTGCGGCTTCATTTTTTTTTTTCTTGGAAATTTCGTTGCTATTTCCTTGATTGTAATCAATCGGCCTGGTGAATATTTTGCAACTTCTGTTTGTTTTCTTGAGTTAACTCTTGCTAGTTCAACATTTTCCCTTACTTACCTTTCAGTCCTGCTTTAATTCAATCGGGCATTGCTTAGAAATGCTTAAAAGTGCGAAATGAGAGAGTGAGCTTTGAGAGAGTACAAACGTTCAAGAAACGTTCAAGAAATGTTATGGTAGACAACACGACGACTAAGTGACATCTCATCATCCCCCAGCTAGCTCACAGAGATTGGTTGTAGTATGTTGCTTATTGCATGGCGTTGTGGGTCTCAACTCCAATTACTTTTGTAATTACTCTTTTTCAGTTTTGTTGCAGTTGAATATCTTTTTGTAATTTTCTTGGTTCCTGTTCATCTTTCTCTCGTACTTTTCAACATTCATCTTCGAATAAAGTCCCTTGTTTCTTGACAATCTGATAGATAGAAGTCCTTTGTTTCTTGGCGTAGTGGGCTAACATAGGTAACCAAAGTTTGTGTTCTTGCATACCATTGCTAGGCTAAACTTCTTTTTTCCTGTGTTTCCAGATTACTAACTGAGACAGTTAGGCAATCACAAGAGTCCTGGGGTGGTTTAAAAGACTGGACAGAAGTTGAGGTGATAAACAATCGCCATATCTTTGTATTCCTTGATTTCCATGATTGACCACCACTCAATTGCTATCCATACATGTATTGGTTCATATCATCTGTGGAAAATATACTTTTAGCTTCAATCAACATATATTTTTATCAGCTAATAGCATCTAATGGAATAGAGCTGTTCATTTTTACCCCATTCTCTTCTCGTAAACTCATAAAAAGTTAATCTGCATTGTAAAATTTCAGGGAGCATGGGTTCTCAAACCACGTAACTCAACACCGAAGTACGTCGTACATTTTGTTGGGGGTGTATTTGTTGGAGCTGCACCTCAGCTTACATATCGCTTGTTTTTGGAGCGCCTTTCAGAGAAGTGAGGCTCTTAGATCTTGTATATCTGTACTATACTTGGATTGTGATGGAACAGTTAACTGTGTTCCCGAGTGTTCTATTATCATACTTCCTTTCGTAGTTCTTTGATCCGTATCAGCATCATATTAGATGTTTAAATGTTTAATGGACTATGAAGCAGGGGTATTTTCATCATTGCAACACCCTACTTCAGTGGATTTGACTATTTCTTAATTGCGGATGAAGTGCAGTTTAAATTTGATAGGTGTCATCGGGCACTTTCCGAATCAGTGAGTTTTCTGTTCTCCATCCCTAAAATCTTGAAGGAAGAAGTTAATTAGTGAATTCATACAGGTTGGAGATCTTCCCATTTTTGGTATTGGCCATTCTCTGGGATCTGTCATCCACCTTTTGATTGGTATCGTATCATCTCTTTATGACGTCATGTCAGGAACTGACTTGGTTTGCAGCAAATCAAATGGGTTAGATTGCTTACTTATCTGTTCATCAGGATCAAGATATGCTGTTGAAAGAAGTGGAAATGTACTAATGGCATTCAATAACAAGGTATTTTTGCCACAAATCTTAAAGGAGTGACCTTCTCTCCGTTATAGAGAATTGACAAAAAGTTGTGTATTCACAGGAGGCAAGCTCAGCTGTTCCTTTGTTCTCCCCAGTGCTTGTACCAATGGCTCAAAGCATGGGGCCTCTCTTATCACAAATTGCATCATCACCCACTTTTCGTCTTGGGGTGAGATCCTTTTATGATCCTTTGTGCTGATTAATGTGCATAGTTTTTAGTTTTGAGATTAGGAAGTCTCATTTTTGTTAATAAGCACCTGCAGGCAGAGATGACAATGAAGCAATTTGAAAATCTTGGCTCTCCGATTATGAAGCAAGTTCTTCCTTTAGTTGAGCAGCTCCCTCCCTTGTACATGGACCTGGTGCGGGGAACACAAGATTTTACCCCAAACCCAGAAGAAACTCGACGACTCGTACGTTATTTAAAACTATTTATACTTATACTTGGTTGTATAGTTTAATTGGGTGAAATAGTAAACAATGAGTTTTTAAGATGATGATATACCTGGCCTGTCTGTGGTCTGCACTTCACAATTAGTGCAGAAGACACTCTTATACTTTAGTTATAGGCTTGCCCTAACTTGTTCTTGTTCTTGTGGAATGCTTGATCAGATAAAGTCATACTATGGCATAGCCCGAAACCTTCTCGTGAAGTTCAAGGACGATACGATCGACGAAACTTCGATGCTAGCTCAGTTGCTTAGCTCGGAGTCTGCAATAAGTTCGATGCTGGACATGTCAACTCGGTCGTTGCCTGGCAATCATGGGTTGCCCTTGCAGCAGGTCCTTACTCCCTCCCTCCCCGTTTCATCATCTCTTGCTGATTATTTGAAACTGAAGGGATCTTTTGCTGATTTAGGCCCTCCCCGACGTACCGCCAGCAATGGTGGATGCTGTAAGCAGAGGTAGTGAAGTTTTTACCAATCTAACTGCGGGGACACCTTGGGAGACCGCAGCGAAAGAAGTAGGGAGCACATTTGGCATCGACTCAAAAATCCTTGGGGCTGAAGTAAGCAAGGATCTAGAGCTGCTGGTGGATGTGGTAACATCATGGATGGCCTCAAACATGGGTCCGAAACTGTTGGGGCCATGA

mRNA sequence

ATGGCCAGTGTGCTGAAACCTACGCACATTCATCGGCATCCGCGTTCTCATCCCATATTCCATCAGTCACAACGACATCGCAACTTCAAGCGCTCCATAGCGCAAATTGGATATCAACCGCGCCGTCAGTTCATTCGAATCACCCAAATTAAGTGCAAGTATGAAGATTCTGGCAACGAACAGCCACCTCGTTCTACTCCCACTGCCTTGCAACTCTACTCCGACATCGAGAGATTACTAACTGAGACAGTTAGGCAATCACAAGAGTCCTGGGGTGGTTTAAAAGACTGGACAGAAGTTGAGGGAGCATGGGTTCTCAAACCACGTAACTCAACACCGAAGTACGTCGTACATTTTGTTGGGGGTGTATTTGTTGGAGCTGCACCTCAGCTTACATATCGCTTGTTTTTGGAGCGCCTTTCAGAGAAGGGTATTTTCATCATTGCAACACCCTACTTCAGTGGATTTGACTATTTCTTAATTGCGGATGAAGTGCAGTTTAAATTTGATAGGTGTCATCGGGCACTTTCCGAATCAGTTGGAGATCTTCCCATTTTTGGTATTGGCCATTCTCTGGGATCTGTCATCCACCTTTTGATTGGATCAAGATATGCTGTTGAAAGAAGTGGAAATGTACTAATGGCATTCAATAACAAGGAGGCAAGCTCAGCTGTTCCTTTGTTCTCCCCAGTGCTTGTACCAATGGCTCAAAGCATGGGGCCTCTCTTATCACAAATTGCATCATCACCCACTTTTCGTCTTGGGGCAGAGATGACAATGAAGCAATTTGAAAATCTTGGCTCTCCGATTATGAAGCAAGTTCTTCCTTTAGTTGAGCAGCTCCCTCCCTTGTACATGGACCTGGTGCGGGGAACACAAGATTTTACCCCAAACCCAGAAGAAACTCGACGACTCATAAAGTCATACTATGGCATAGCCCGAAACCTTCTCGTGAAGTTCAAGGACGATACGATCGACGAAACTTCGATGCTAGCTCAGTTGCTTAGCTCGGAGTCTGCAATAAGTTCGATGCTGGACATGTCAACTCGGTCGTTGCCTGGCAATCATGGGTTGCCCTTGCAGCAGGCCCTCCCCGACGTACCGCCAGCAATGGTGGATGCTGTAAGCAGAGGTAGTGAAGTTTTTACCAATCTAACTGCGGGGACACCTTGGGAGACCGCAGCGAAAGAAGTAGGGAGCACATTTGGCATCGACTCAAAAATCCTTGGGGCTGAAGTAAGCAAGGATCTAGAGCTGCTGGTGGATGTGGTAACATCATGGATGGCCTCAAACATGGGTCCGAAACTGTTGGGGCCATGA

Coding sequence (CDS)

ATGGCCAGTGTGCTGAAACCTACGCACATTCATCGGCATCCGCGTTCTCATCCCATATTCCATCAGTCACAACGACATCGCAACTTCAAGCGCTCCATAGCGCAAATTGGATATCAACCGCGCCGTCAGTTCATTCGAATCACCCAAATTAAGTGCAAGTATGAAGATTCTGGCAACGAACAGCCACCTCGTTCTACTCCCACTGCCTTGCAACTCTACTCCGACATCGAGAGATTACTAACTGAGACAGTTAGGCAATCACAAGAGTCCTGGGGTGGTTTAAAAGACTGGACAGAAGTTGAGGGAGCATGGGTTCTCAAACCACGTAACTCAACACCGAAGTACGTCGTACATTTTGTTGGGGGTGTATTTGTTGGAGCTGCACCTCAGCTTACATATCGCTTGTTTTTGGAGCGCCTTTCAGAGAAGGGTATTTTCATCATTGCAACACCCTACTTCAGTGGATTTGACTATTTCTTAATTGCGGATGAAGTGCAGTTTAAATTTGATAGGTGTCATCGGGCACTTTCCGAATCAGTTGGAGATCTTCCCATTTTTGGTATTGGCCATTCTCTGGGATCTGTCATCCACCTTTTGATTGGATCAAGATATGCTGTTGAAAGAAGTGGAAATGTACTAATGGCATTCAATAACAAGGAGGCAAGCTCAGCTGTTCCTTTGTTCTCCCCAGTGCTTGTACCAATGGCTCAAAGCATGGGGCCTCTCTTATCACAAATTGCATCATCACCCACTTTTCGTCTTGGGGCAGAGATGACAATGAAGCAATTTGAAAATCTTGGCTCTCCGATTATGAAGCAAGTTCTTCCTTTAGTTGAGCAGCTCCCTCCCTTGTACATGGACCTGGTGCGGGGAACACAAGATTTTACCCCAAACCCAGAAGAAACTCGACGACTCATAAAGTCATACTATGGCATAGCCCGAAACCTTCTCGTGAAGTTCAAGGACGATACGATCGACGAAACTTCGATGCTAGCTCAGTTGCTTAGCTCGGAGTCTGCAATAAGTTCGATGCTGGACATGTCAACTCGGTCGTTGCCTGGCAATCATGGGTTGCCCTTGCAGCAGGCCCTCCCCGACGTACCGCCAGCAATGGTGGATGCTGTAAGCAGAGGTAGTGAAGTTTTTACCAATCTAACTGCGGGGACACCTTGGGAGACCGCAGCGAAAGAAGTAGGGAGCACATTTGGCATCGACTCAAAAATCCTTGGGGCTGAAGTAAGCAAGGATCTAGAGCTGCTGGTGGATGTGGTAACATCATGGATGGCCTCAAACATGGGTCCGAAACTGTTGGGGCCATGA

Protein sequence

MASVLKPTHIHRHPRSHPIFHQSQRHRNFKRSIAQIGYQPRRQFIRITQIKCKYEDSGNEQPPRSTPTALQLYSDIERLLTETVRQSQESWGGLKDWTEVEGAWVLKPRNSTPKYVVHFVGGVFVGAAPQLTYRLFLERLSEKGIFIIATPYFSGFDYFLIADEVQFKFDRCHRALSESVGDLPIFGIGHSLGSVIHLLIGSRYAVERSGNVLMAFNNKEASSAVPLFSPVLVPMAQSMGPLLSQIASSPTFRLGAEMTMKQFENLGSPIMKQVLPLVEQLPPLYMDLVRGTQDFTPNPEETRRLIKSYYGIARNLLVKFKDDTIDETSMLAQLLSSESAISSMLDMSTRSLPGNHGLPLQQALPDVPPAMVDAVSRGSEVFTNLTAGTPWETAAKEVGSTFGIDSKILGAEVSKDLELLVDVVTSWMASNMGPKLLGP

Homology

[Close]

BLAST of CmaCh06G017460 vs. TAIR 10
Match: AT5G47860.1 (Protein of unknown function (DUF1350) )

HSP 1 Score: 578.9 bits (1491), Expect = 3.3e-165
Identity = 293/425 (68.94%), Postives = 342/425 (80.47%), Query Frame = 0


Query: 18  PIFHQSQRHRNF---KRSIAQIGYQPRRQFIRITQIKCKYEDSGNEQPPRSTPTALQLYS 77
           P F   +R  +F   +RS+  I    + +  R      K  D   +   R+  T +Q+Y 
Sbjct: 10  PSFSPRRRFCSFSHNRRSLPSIFSFNKERVSRRVFCSSKENDINRD---RNQSTGIQVYG 69

Query: 78  DIERLLTETVRQSQESWGGLKDWTEVEGAWVLKPRNSTPKYVVHFVGGVFVGAAPQLTYR 137
           +IERLLTETV+ SQ S GG  DW+EVEGAWVLKPRNS PK VVHF+GG+FVGAAPQLTYR
Sbjct: 70  EIERLLTETVKNSQSSSGGSSDWSEVEGAWVLKPRNSKPKMVVHFIGGIFVGAAPQLTYR 129

Query: 138 LFLERLSEKGIFIIATPYFSGFDYFLIADEVQFKFDRCHRALSESVGDLPIFGIGHSLGS 197
           LFLERL+EK + +IATPY SGFD+F IADEVQFK+DRC R+L E V DLP FGIGHSLGS
Sbjct: 130 LFLERLAEKDVLVIATPYASGFDHFNIADEVQFKYDRCCRSLQEEVQDLPSFGIGHSLGS 189

Query: 198 VIHLLIGSRYAVERSGNVLMAFNNKEASSAVPLFSPVLVPMAQSMGPLLSQIASSPTFRL 257
           VIHLLIGSRYAV+R+GNV MAFNNKEAS A+PLFSPVLVPMAQS+GPLLSQ+A+SPT RL
Sbjct: 190 VIHLLIGSRYAVQRNGNVFMAFNNKEASLAIPLFSPVLVPMAQSLGPLLSQVATSPTIRL 249

Query: 258 GAEMTMKQFENLGSPIMKQVLPLVEQLPPLYMDLVRGTQDFTPNPEETRRLIKSYYGIAR 317
           GAEMT KQ E L  PIMKQ+LPLVEQLPPLYMDLV+G +DF P PEETRRLI+SYYGI+R
Sbjct: 250 GAEMTRKQLETLSPPIMKQILPLVEQLPPLYMDLVKGREDFVPKPEETRRLIRSYYGISR 309

Query: 318 NLLVKFKDDTIDETSMLAQLLSSESAISSMLDMSTRSLPGNHGLPLQQALPDVPPAMVDA 377
           NLL+KF+DD+IDETS+LAQ+L  ES+ISS LDMS R+LPG+HGLPLQQALPDVPP M +A
Sbjct: 310 NLLIKFEDDSIDETSILAQVLGVESSISSKLDMSIRTLPGDHGLPLQQALPDVPPGMAEA 369

Query: 378 VSRGSEVFTNLTAGTPWETAAKEVGSTFGIDSKILGAEVSKDLELLVDVVTSWMASNMGP 437
           V+RGSE   N+  GTPWE+ AKEVG + G+DSKIL A++SKDL  LVD +TSWM SNMGP
Sbjct: 370 VNRGSEFLANIAVGTPWESMAKEVGGSLGMDSKILRADMSKDLAQLVDAITSWMISNMGP 429

Query: 438 KLLGP 440
           KLL P
Sbjct: 430 KLLRP 431

[Close]

BLAST of CmaCh06G017460 vs. TAIR 10
Match: AT3G43540.1 (Protein of unknown function (DUF1350) )

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-34
Identity = 101/314 (32.17%), Postives = 158/314 (50.32%), Query Frame = 0


Query: 72  LYSDIERLLTETVRQSQESWGGLKDWTEVEGAWVL--KPRNSTPKYVVHFVGGVFVGAAP 131
           L+S   R L+ TV  +  S    K +T ++   V+   P+   P+ +V F+GG FVGA P
Sbjct: 20  LFSKRARALSLTVTATGGSRNN-KVYTRLDSCLVIPPPPKFKKPRAIVKFLGGAFVGAVP 79

Query: 132 QLTYRLFLERLSEKGIFIIATPYFSGFDYFLIADEVQFKFDRCHRALSES---------- 191
           +LTY    E L+++G  I++ PY   FD+   A +V  +F+ C   +  S          
Sbjct: 80  ELTYSYLKELLAKEGYLIVSVPYNVTFDHEQAAKQVYERFNSCLDTIVSSGIPNSNLKPG 139

Query: 192 -VGDLPIFGIGHSLGSVIHLLIGSRYAVE-RSGNVLMAFNNKEASSAVPLFSPVLVPMAQ 251
            + DLP+F +GHS G+++ +L GS +A +    N +++FNNK A+ AVP F   L P+ Q
Sbjct: 140 DLADLPLFSVGHSNGALLQVLTGSYFAEKIPKVNAIISFNNKSATEAVPYFEQ-LGPLIQ 199

Query: 252 SMGPL--------LSQIASSPTFRLGAEMTMKQFENLGSPIMKQVLPLVEQLPPLYMDLV 311
            M P+        +++ AS    +L  +       N     +K    LV+QLP ++ ++ 
Sbjct: 200 QMLPMVEASPVYEMARNASGDVLKLLLDTAGTTILNNDQEALKSFTKLVDQLPSVFGEVG 259

Query: 312 RGTQDFTPNPEETRRLIKSYYGIARNLLVKFKDDTIDETSMLAQLLSSE-SAISSMLDMS 363
           +G  +F P+P E R   K  Y +   LLV+F  D IDET +L + L     +I   L+  
Sbjct: 260 QGVSEFRPSPLENRNCFKCSYSVPHTLLVQFNSDAIDETDLLEETLRPRIESIGGTLEKV 319

[Close]

BLAST of CmaCh06G017460 vs. TAIR 10
Match: AT3G43540.2 (Protein of unknown function (DUF1350) )

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-24
Identity = 77/246 (31.30%), Postives = 122/246 (49.59%), Query Frame = 0


Query: 138 ERLSEKGIFIIATPYFSGFDYFLIADEVQFKFDRCHRALSES-----------VGDLPIF 197
           E L+++G  I++ PY   FD+   A +V  +F+ C   +  S           + DLP+F
Sbjct: 15  ELLAKEGYLIVSVPYNVTFDHEQAAKQVYERFNSCLDTIVSSGIPNSNLKPGDLADLPLF 74

Query: 198 GIGHSLGSVIHLLIGSRYAVE-RSGNVLMAFNNKEASSAVPLFSPVLVPMAQSMGPL--- 257
            +GHS G+++ +L GS +A +    N +++FNNK A+ AVP F   L P+ Q M P+   
Sbjct: 75  SVGHSNGALLQVLTGSYFAEKIPKVNAIISFNNKSATEAVPYFEQ-LGPLIQQMLPMVEA 134

Query: 258 -----LSQIASSPTFRLGAEMTMKQFENLGSPIMKQVLPLVEQLPPLYMDLVRGTQDFTP 317
                +++ AS    +L  +       N     +K    LV+QLP ++ ++ +G  +F P
Sbjct: 135 SPVYEMARNASGDVLKLLLDTAGTTILNNDQEALKSFTKLVDQLPSVFGEVGQGVSEFRP 194

Query: 318 NPEETRRLIKSYYGIARNLLVKFKDDTIDETSMLAQLLSSE-SAISSMLDMSTRSLPGNH 363
           +P E R   K  Y +   LLV+F  D IDET +L + L     +I   L+     L GNH
Sbjct: 195 SPLENRNCFKCSYSVPHTLLVQFNSDAIDETDLLEETLRPRIESIGGTLEKV--RLNGNH 254

The following BLAST results are available for this feature:

BLAST of CmaCh06G017460 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G017460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47860.1	3.3e-165	68.94	Protein of unknown function (DUF1350)	[more]
AT3G43540.1	2.1e-34	32.17	Protein of unknown function (DUF1350)	[more]
AT3G43540.2	4.4e-24	31.30	Protein of unknown function (DUF1350)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010765	Protein of unknown function DUF1350	PFAM	PF07082	DUF1350	coord: 96..364 e-value: 1.1E-56 score: 192.0
IPR010765	Protein of unknown function DUF1350	PANTHER	PTHR34127	OS04G0405600 PROTEIN	coord: 12..430
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..24
None	No IPR available	PANTHER	PTHR34127:SF1	OS04G0405600 PROTEIN	coord: 12..430
IPR029058	Alpha/Beta hydrolase fold	SUPERFAMILY	53474	alpha/beta-Hydrolases	coord: 103..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G017460.1	CmaCh06G017460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity