Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTCTCTTTCCATTTCCATGCCCATGCCAACTTCTTTGTTTCTCGCTCTCCTATTCTTGTCAACTTTTTTGCATGCATGCGATGCTCGTCTTCTTAAATTATGCCACAGCTCGAGGCTCGAATCGTGTATGATCTCTCCAGGGTTTCGAATGGATCAACTCAAGAGAAGTTTGGATAAAAGCAAAAGTAACGAGGTTTCTTCCGTGGAGAATGTTGGGATTGAAATATTGAAGGTATATCAACTTGTTTAGCTCTTAACCCTGATAATATTCGTCTTTCTCATGGAGGCTCATGGGTCTAACTAACCCCGAGCTGATAGTAGTCTCTTTTACCTATTTGCTACTATAAGAACCTAAAAATAATGATCAAGAACTTGTTCGACTTTAAAATAATCAAATCATTCCAATGTGAAAATTATATAATAGAATCGTTTTCATGGTTTTTGGTCGAGATATTCATCGACATATTATCATTTTTTTTATTATTTTTGGTTTACACGTGAAATCCAATCGTTTCTATCAACATTTCCTTCGACAACAACATTTAATTTTTAGGTCAAGACAAGGCATTAATATAGACAAAAGCATATGAATGATAAATGCATGGAAAAGAGATATTAAAATAACAATCACCATTAATGGACCTTGGAAATTTAGCAGGGCATGAAGAAGCTTAGAAGGTTGGCAATGGAGCTTCCAGTGAGAGACAGAGACAGAGACAAAGACAAAGACATAGACAAAGTGGTGAACTCCGAGGAAAACGAGGTTGGAGAAGACATGGTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCGAAAACCCTAGCTCACAACTTCATATCTCTTCGGAATTTCCTATGATCTTCAAAATATGTTCCAAAAATCAATGTATTGTATCTAAGGGTCTACTATATTCAAGATTTTTGTGTTAAATAAAAGCATGCA
mRNA sequence
TATTTCTCTTTCCATTTCCATGCCCATGCCAACTTCTTTGTTTCTCGCTCTCCTATTCTTGTCAACTTTTTTGCATGCATGCGATGCTCGTCTTCTTAAATTATGCCACAGCTCGAGGCTCGAATCGTGTATGATCTCTCCAGGGTTTCGAATGGATCAACTCAAGAGAAGTTTGGATAAAAGCAAAAGTAACGAGGTTTCTTCCGTGGAGAATGTTGGGATTGAAATATTGAAGGGCATGAAGAAGCTTAGAAGGTTGGCAATGGAGCTTCCAGTGAGAGACAGAGACAGAGACAAAGACAAAGACATAGACAAAGTGGTGAACTCCGAGGAAAACGAGGTTGGAGAAGACATGGTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCGAAAACCCTAGCTCACAACTTCATATCTCTTCGGAATTTCCTATGATCTTCAAAATATGTTCCAAAAATCAATGTATTGTATCTAAGGGTCTACTATATTCAAGATTTTTGTGTTAAATAAAAGCATGCA
Coding sequence (CDS)
ATGCCCATGCCAACTTCTTTGTTTCTCGCTCTCCTATTCTTGTCAACTTTTTTGCATGCATGCGATGCTCGTCTTCTTAAATTATGCCACAGCTCGAGGCTCGAATCGTGTATGATCTCTCCAGGGTTTCGAATGGATCAACTCAAGAGAAGTTTGGATAAAAGCAAAAGTAACGAGGTTTCTTCCGTGGAGAATGTTGGGATTGAAATATTGAAGGGCATGAAGAAGCTTAGAAGGTTGGCAATGGAGCTTCCAGTGAGAGACAGAGACAGAGACAAAGACAAAGACATAGACAAAGTGGTGAACTCCGAGGAAAACGAGGTTGGAGAAGACATGGTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCGAAAACCCTAG
Protein sequence
MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP
Homology
BLAST of CmaCh06G007780 vs. ExPASy Swiss-Prot
Match:
Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1)
HSP 1 Score: 46.2 bits (108), Expect = 3.3e-04
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0
Query: 107 EVGEDMVVMDYAQPHRKPPIHNRK 131
E GE++VVMDY QPHRKPPIHN K
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85
BLAST of CmaCh06G007780 vs. ExPASy TrEMBL
Match:
A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60
MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV
Sbjct: 1 MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60
Query: 61 SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 120
SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP
Sbjct: 61 SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 120
Query: 121 HRKPPIHNRKP 132
HRKPPIHNRKP
Sbjct: 121 HRKPPIHNRKP 131
BLAST of CmaCh06G007780 vs. ExPASy TrEMBL
Match:
A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1)
HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 71/135 (52.59%), Postives = 90/135 (66.67%), Query Frame = 0
Query: 3 MPTSLFLALLFLSTFLHACDA-RLLKLCHSSRLESCM-----ISPGFRMDQLKRSLDKSK 62
M T L +L LST LHACDA L+L S S + I FR DQ +RSL+K+
Sbjct: 1 MATPSLLFILLLST-LHACDACHRLQLFEYSNPVSRLGLLAPIPQEFRTDQPERSLNKNI 60
Query: 63 SNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMD 122
++VSS +GI ILKGMKK +RLAME ++++ +K+++ EENEVGEDMVVMD
Sbjct: 61 IHKVSSSVEIGIGILKGMKKHKRLAMEFSMKEK--------EKLMSYEENEVGEDMVVMD 120
Query: 123 YAQPHRKPPIHNRKP 132
YAQPHRKPPIHN+KP
Sbjct: 121 YAQPHRKPPIHNKKP 126
BLAST of CmaCh06G007780 vs. ExPASy TrEMBL
Match:
A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 7.8e-17
Identity = 72/142 (50.70%), Postives = 89/142 (62.68%), Query Frame = 0
Query: 1 MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCM-----ISPG---FRMDQLKRSL 60
M MP FL LLF S+ LHACDA L+ SS S + +S G DQ + S
Sbjct: 1 MAMP-YFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSF 60
Query: 61 DKSKS-NEVSSVEN-VGIEILKGMKK-LRRLAMELPVRDRDRDKDKDIDKVVNSEENEVG 120
DK+ + N + + EN +GIE+LKGMK+ RL ME P++ +KV+NS+ENEVG
Sbjct: 61 DKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMK----------EKVMNSKENEVG 120
Query: 121 EDMVVMDYAQPHRKPPIHNRKP 132
EDMVVMDYAQPHRKPPIHN KP
Sbjct: 121 EDMVVMDYAQPHRKPPIHNEKP 130
BLAST of CmaCh06G007780 vs. ExPASy TrEMBL
Match:
A0A438K320 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009086 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 0
Query: 6 SLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGF-RMDQL-KRSLDKSKSNEVSSV 65
S L LL LS +HAC+AR L + E ++S DQ+ K SL + +
Sbjct: 2 SSLLLLLLLSLSMHACNARHLGVIGKENREVHLLSKVVEEADQVHKISLPPRLIPSMETA 61
Query: 66 ENV-GIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHR 125
E + +IL G K+ RL + D+++ V+S+E ++ ED+VVMDYAQPHR
Sbjct: 62 EKLQPQQILPGWKRHSRLML--------GSAPHDVEETVDSKEGDIVEDIVVMDYAQPHR 121
Query: 126 KPPIHNRKP 132
KPPIHN+ P
Sbjct: 122 KPPIHNKDP 122
BLAST of CmaCh06G007780 vs. ExPASy TrEMBL
Match:
U5GMJ2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G122600 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0
Query: 96 DIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP 132
D ++ V SEEN++ ED+ VMDYAQPHRKPPIHN+KP
Sbjct: 148 DTEEAVRSEENDIAEDVAVMDYAQPHRKPPIHNKKP 183
BLAST of CmaCh06G007780 vs. NCBI nr
Match:
XP_023005579.1 (uncharacterized protein LOC111498521 [Cucurbita maxima])
HSP 1 Score: 253.8 bits (647), Expect = 7.9e-64
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60
MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV
Sbjct: 1 MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60
Query: 61 SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 120
SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP
Sbjct: 61 SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 120
Query: 121 HRKPPIHNRKP 132
HRKPPIHNRKP
Sbjct: 121 HRKPPIHNRKP 131
BLAST of CmaCh06G007780 vs. NCBI nr
Match:
XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 231.5 bits (589), Expect = 4.2e-57
Identity = 120/131 (91.60%), Postives = 127/131 (96.95%), Query Frame = 0
Query: 1 MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60
MPMPTS FLALLFLSTFLHACDARLLKLCHSSRLESC+ISPGFR +QL+RSLD+SKSN+V
Sbjct: 1 MPMPTSFFLALLFLSTFLHACDARLLKLCHSSRLESCLISPGFRTNQLERSLDESKSNDV 60
Query: 61 SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 120
SS+ENVGIEILKGMKKLRRLAMELPVRDRDR DKDIDKVVNSEENEVGEDMVVMDYAQP
Sbjct: 61 SSMENVGIEILKGMKKLRRLAMELPVRDRDR--DKDIDKVVNSEENEVGEDMVVMDYAQP 120
Query: 121 HRKPPIHNRKP 132
HRKPPIHN+KP
Sbjct: 121 HRKPPIHNQKP 129
BLAST of CmaCh06G007780 vs. NCBI nr
Match:
KAG7028383.1 (Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 225.7 bits (574), Expect = 2.3e-55
Identity = 117/131 (89.31%), Postives = 126/131 (96.18%), Query Frame = 0
Query: 1 MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60
MPMPTSLFL+LLFLSTFLHACDARLLKLCHSSRLE CMISPGFR +QL++SLD+S+SN+V
Sbjct: 1 MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDV 60
Query: 61 SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 120
SS+ENVGIEILKGMKKLRRLAMELPVRD DR DKDIDKVVNSEENEVGEDMVVMDYAQP
Sbjct: 61 SSMENVGIEILKGMKKLRRLAMELPVRDIDR--DKDIDKVVNSEENEVGEDMVVMDYAQP 120
Query: 121 HRKPPIHNRKP 132
HRKPPIHN+KP
Sbjct: 121 HRKPPIHNQKP 129
BLAST of CmaCh06G007780 vs. NCBI nr
Match:
KAG6596855.1 (Root meristem growth factor 6, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 158.3 bits (399), Expect = 4.5e-35
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0
Query: 38 MISPGFRMDQLKRSLDKSKSNEVSSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDI 97
MISPGFR +QL++SLD+S+SN+VSS+ENVGIEILKGMKKLRRLAMELPVRD DR DKDI
Sbjct: 1 MISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDR--DKDI 60
Query: 98 DKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP 132
DKVVNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 61 DKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP 92
BLAST of CmaCh06G007780 vs. NCBI nr
Match:
XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida])
HSP 1 Score: 114.4 bits (285), Expect = 7.5e-22
Identity = 73/131 (55.73%), Postives = 89/131 (67.94%), Query Frame = 0
Query: 7 LFLALLFLSTFLHACDARLLKLCHS----SRLESCMISPGFRMDQLKRSLDKSKSNEVSS 66
LFL LL S+ LHAC+AR L+ S SR+E IS G DQ +RS ++S S+++S
Sbjct: 4 LFLILLIFSSTLHACEARCLRFFESSSFVSRIEPHSISQGIWADQPERSFEESNSDKLSY 63
Query: 67 VE-NVGIEILKGMKKL-RRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 126
E VGIE+LKGMKK RL ME P++ +KV+NS+ENEVGEDMVVMDYAQP
Sbjct: 64 KEIIVGIEMLKGMKKHGSRLVMEFPMK----------EKVLNSKENEVGEDMVVMDYAQP 123
Query: 127 HRKPPIHNRKP 132
HRKPPIHN KP
Sbjct: 124 HRKPPIHNEKP 124
BLAST of CmaCh06G007780 vs. TAIR 10
Match:
AT4G16515.1 (Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). )
HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0
Query: 107 EVGEDMVVMDYAQPHRKPPIHNRK 131
E GE++VVMDY QPHRKPPIHN K
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q93VK8 | 3.3e-04 | 79.17 | Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1KZM9 | 3.8e-64 | 100.00 | uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521... | [more] |
| A0A6J1DKL1 | 7.6e-20 | 52.59 | uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
| A0A0A0L298 | 7.8e-17 | 50.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1 | [more] |
| A0A438K320 | 2.8e-06 | 37.98 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009086 PE=4 SV=1 | [more] |
| U5GMJ2 | 8.1e-06 | 69.44 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G122600 PE=4 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_023005579.1 | 7.9e-64 | 100.00 | uncharacterized protein LOC111498521 [Cucurbita maxima] | [more] |
| XP_023540680.1 | 4.2e-57 | 91.60 | uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo] | [more] |
| KAG7028383.1 | 2.3e-55 | 89.31 | Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| KAG6596855.1 | 4.5e-35 | 87.23 | Root meristem growth factor 6, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| XP_038905997.1 | 7.5e-22 | 55.73 | uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G16515.1 | 2.3e-05 | 79.17 | Encodes a root meristem growth factor (RGF). Belongs to a family of functionall... | [more] |
