Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCAATTGTCAATATTCTCTCTCTCTCCCCCTCTCTCTCGATTTTCCGTTTCACATTCGAAGTGCTTCGTTCCGCAGGCGGGGCCTCCGACAGGAAAAAAAAAAATGCCAAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATGTAATTTTTTGAAGTTTCTTCCTCGATTTCTGTGGCGTTCTCTTGTATATTACTTCGTTTGATCTTTTTCCTCAAGTATTCTTCCTCTGTTTCTATCTGTAGTTTGCGTGTTTCAGGATTTCGCACCGGAAGTTTCATTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGAGTAATCACGAGAGTAGAAATGACTCGACTGATTTCGACGTTCTGTTTCCTCGCGATTAGCCTGATCTTCTTGATCAAGTATGGTTTCGATCACTTCTGTTTCTCTTTTTTACTTCTCGGAGCCGATTTCTTTACTGTCACTTCAATGCTGTGTATGTCTCTTGTGTCATTTTAGCAGGTAGCTTCTTCAATTAACTTCGCTTAGCCTTTTTCATGTTTTTGTTTCACATTGCATTTAGCTTTGATAAGTACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGAAGAAAGCAACTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGTAAGTTTTGAGAACATTTTGATTTCTTTGGAAGGGGAGAAGCCTTTATAGATTCATAAAACAGTGTGAAATGAAGTTTCTGATCAAAGCAATTCTGCTTTAGGAGAATTTCCAACTGTTGGACTTGAATCAGATCCAGGTTCTCTCCCTCTTATTGATTTGCTGCATTTTTGTTGCGCATCAGTACCATCTCAATTTTCTTCCAAGCCTCTCTACTAATTTGTTTTGCCTATTACAGATCATATAACCTCATGCATCAGGTGATGGTGAAGGAGGAATTGAAGTGACTGAAAGTATGCAATTGATTCGCTAATTTTGTGAGACTGCTTCATTGATCCACTGAAAGCCACTCGGACCACAGTAATGTCCTACTGCATTATCCTTCTATTCTTTCACAAAATAAGATGTTGGCGTTCAGATTTTCGGTAGAATTTATCCCTGTTGTGGACTAAGATGCATAATAGGTGAAATCCTCTCGTCTTTTAGATGTTTTTCTCTAAAATTTCATCCGCCTTAAGATCATAACCTACTAAGATCTGTCCCTTTTTTCCGCTTCTTATCAGTACTGAAAACAGCTCCTGTGCTTTAAACTAAGAATCACAAACACTTCAATGGATAAAACAATTGTCATTCCAAACAGTTCGTTCTTTAAATTAAAGTAATAATAATGAAAAAGTAAAAGTAGGCTACAGGAACTTCATTATGTCTACTATATATTATTGAAATAACAACCAGATTCTCTTTTAAAAGTTATAGGATTGAATCTCTAATTGCTCATCTTTCAGAACTTTTATATTATTAATATTTTATAGTTTATGTTATATGACTGAACCTTAATAGGTGAAAGACTATCCACCATTTTTCTCCCCAAAGCTAGCGGCTGTTATGAAGAATCTCTTCCCTAAGATGGAAAACTGTATGTAACATTCACAGCTTCAAGGGACAAGGAGGAGTTCTTTTCAGGCTTTTTCCAGTTTATAGCTTTAAAATCCTGCCATTGCGATGCTTCCGTAATAACAAACATTCAAATTTTCTGTTCATGTAGGTGTTGCCCGGGTCATTGGAAAGCCCTTACAAATGTGAGGCTCAAGGGAGTCGCTTTCAATTTCTTCCATCATCTTCGGCGTACGTAATGTTCCTTTTTCTTTTCTTTTCTTTTCTATTTATAAAAATTAAGCTTATTGGTGAC
mRNA sequence
TATCAATTGTCAATATTCTCTCTCTCTCCCCCTCTCTCTCGATTTTCCGTTTCACATTCGAAGTGCTTCGTTCCGCAGGCGGGGCCTCCGACAGGAAAAAAAAAAATGCCAAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATTTTGCGTGTTTCAGGATTTCGCACCGGAAGTTTCATTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGATACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGAAGAAAGCAACTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGTGAAAGACTATCCACCATTTTTCTCCCCAAAGCTAGCGGCTGTTATGAAGAATCTCTTCCCTAAGATGGAAAACTGTATGTGTTGCCCGGGTCATTGGAAAGCCCTTACAAATGTGAGGCTCAAGGGAGTCGCTTTCAATTTCTTCCATCATCTTCGGCGTACGTAATGTTCCTTTTTCTTTTCTTTTCTTTTCTATTTATAAAAATTAAGCTTATTGGTGAC
Coding sequence (CDS)
ATGCCAAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATTTTGCGTGTTTCAGGATTTCGCACCGGAAGTTTCATTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGATACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGAAGAAAGCAACTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGTGAAAGACTATCCACCATTTTTCTCCCCAAAGCTAGCGGCTGTTATGAAGAATCTCTTCCCTAAGATGGAAAACTGTATGTGTTGCCCGGGTCATTGGAAAGCCCTTACAAATGTGAGGCTCAAGGGAGTCGCTTTCAATTTCTTCCATCATCTTCGGCGTACGTAA
Protein sequence
MPNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYPPFFSPKLAAVMKNLFPKMENCMCCPGHWKALTNVRLKGVAFNFFHHLRRT
Homology
BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match:
A0A5D3CIQ2 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001120 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
NANF STI A+LPLSS ACFRISHRK H SF SSSM FM RNL +
Sbjct: 5 NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64
Query: 63 RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
+ SN QAKKATEAAL DN+QL+ ++P
Sbjct: 65 QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108
BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match:
A0A1S3BKQ4 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
NANF STI A+LPLSS ACFRISHRK H SF SSSM FM RNL +
Sbjct: 5 NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64
Query: 63 RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
+ SN QAKKATEAAL DN+QL+ ++P
Sbjct: 65 QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108
BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match:
A0A1S3BK29 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
NANF STI A+LPLSS ACFRISHRK H SF SSSM FM RNL +
Sbjct: 5 NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64
Query: 63 RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
+ SN QAKKATEAAL DN+QL+ ++P
Sbjct: 65 QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108
BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match:
A0A6J1E988 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431057 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 49/103 (47.57%), Postives = 59/103 (57.28%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------- 62
NANF STIP A+LPL S +ACFR+SHRK H S SSS++ FMA RNL
Sbjct: 5 NANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRE 64
Query: 63 -----GEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYP 91
+FD QAKKATEAAL DN+QL+ ++P
Sbjct: 65 SSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFP 107
BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match:
A0A6J1HNL5 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465233 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 47/103 (45.63%), Postives = 57/103 (55.34%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------- 62
NA F STIP A+LPL S +ACFR+ HRK H S SSS++ FMA RNL
Sbjct: 5 NAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRE 64
Query: 63 -----GEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYP 91
+FD QAKKATEAAL DN+QL+ ++P
Sbjct: 65 SSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFP 107
BLAST of CmaCh06G006110 vs. NCBI nr
Match:
KAG7028235.1 (hypothetical protein SDJN02_09416 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 181.4 bits (459), Expect = 5.3e-42
Identity = 95/111 (85.59%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF
Sbjct: 5 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 64
Query: 63 RLSNKLQAKKATEAALSDNEQLI------------VKDYPPFFSPKLAAVM 102
RLSNKLQAKKA EAALSDNEQLI VKDYPPFF KLAAV+
Sbjct: 65 RLSNKLQAKKAIEAALSDNEQLIENFQPLDLNQIQVKDYPPFFHLKLAAVL 115
BLAST of CmaCh06G006110 vs. NCBI nr
Match:
KAG6596702.1 (COBW domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 84/133 (63.16%), Postives = 89/133 (66.92%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGE-------- 62
NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLG+
Sbjct: 429 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGDLIFLIKYG 488
Query: 63 FDTVMFGFRL---------SNKLQAKKATEAALSDNEQL------IVKDYPPFFSPKLAA 113
FD F F L S + T SD + + VKDYPPFF KLAA
Sbjct: 489 FDHFCFSFSLLGADFFTVTSMLFDREFPTVGLESDPDHITLSTRTTVKDYPPFFHLKLAA 548
BLAST of CmaCh06G006110 vs. NCBI nr
Match:
XP_023553103.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023553104.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo])
HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 50/103 (48.54%), Postives = 59/103 (57.28%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------- 62
NANF STIP A+LPL S FACFR+SHRK H S SSS++ FMA RNL
Sbjct: 5 NANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRE 64
Query: 63 -----GEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYP 91
+FD QAKKATEAAL DN+QL+ ++P
Sbjct: 65 SSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFP 107
BLAST of CmaCh06G006110 vs. NCBI nr
Match:
XP_008448608.1 (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis melo])
HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
NANF STI A+LPLSS ACFRISHRK H SF SSSM FM RNL +
Sbjct: 5 NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64
Query: 63 RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
+ SN QAKKATEAAL DN+QL+ ++P
Sbjct: 65 QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108
BLAST of CmaCh06G006110 vs. NCBI nr
Match:
KAA0052999.1 (protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK11455.1 protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa])
HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0
Query: 3 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
NANF STI A+LPLSS ACFRISHRK H SF SSSM FM RNL +
Sbjct: 5 NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64
Query: 63 RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
+ SN QAKKATEAAL DN+QL+ ++P
Sbjct: 65 QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CIQ2 | 1.2e-10 | 49.04 | Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A1S3BKQ4 | 1.2e-10 | 49.04 | protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=365... | [more] |
| A0A1S3BK29 | 1.2e-10 | 49.04 | protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=365... | [more] |
| A0A6J1E988 | 1.5e-10 | 47.57 | protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=... | [more] |
| A0A6J1HNL5 | 2.9e-09 | 45.63 | protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG7028235.1 | 5.3e-42 | 85.59 | hypothetical protein SDJN02_09416 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| KAG6596702.1 | 1.1e-31 | 63.16 | COBW domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia... | [more] |
| XP_023553103.1 | 1.4e-10 | 48.54 | protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_... | [more] |
| XP_008448608.1 | 2.4e-10 | 49.04 | PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis me... | [more] |
| KAA0052999.1 | 2.4e-10 | 49.04 | protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK11455.1 protein L... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
