CmaCh06G006110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G006110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Cma_Chr06: 2969545 .. 2971443 (-)
RNA-Seq Expression	CmaCh06G006110
Synteny	CmaCh06G006110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCAATTGTCAATATTCTCTCTCTCTCCCCCTCTCTCTCGATTTTCCGTTTCACATTCGAAGTGCTTCGTTCCGCAGGCGGGGCCTCCGACAGGAAAAAAAAAAATGCCAAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATGTAATTTTTTGAAGTTTCTTCCTCGATTTCTGTGGCGTTCTCTTGTATATTACTTCGTTTGATCTTTTTCCTCAAGTATTCTTCCTCTGTTTCTATCTGTAGTTTGCGTGTTTCAGGATTTCGCACCGGAAGTTTCATTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGAGTAATCACGAGAGTAGAAATGACTCGACTGATTTCGACGTTCTGTTTCCTCGCGATTAGCCTGATCTTCTTGATCAAGTATGGTTTCGATCACTTCTGTTTCTCTTTTTTACTTCTCGGAGCCGATTTCTTTACTGTCACTTCAATGCTGTGTATGTCTCTTGTGTCATTTTAGCAGGTAGCTTCTTCAATTAACTTCGCTTAGCCTTTTTCATGTTTTTGTTTCACATTGCATTTAGCTTTGATAAGTACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGAAGAAAGCAACTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGTAAGTTTTGAGAACATTTTGATTTCTTTGGAAGGGGAGAAGCCTTTATAGATTCATAAAACAGTGTGAAATGAAGTTTCTGATCAAAGCAATTCTGCTTTAGGAGAATTTCCAACTGTTGGACTTGAATCAGATCCAGGTTCTCTCCCTCTTATTGATTTGCTGCATTTTTGTTGCGCATCAGTACCATCTCAATTTTCTTCCAAGCCTCTCTACTAATTTGTTTTGCCTATTACAGATCATATAACCTCATGCATCAGGTGATGGTGAAGGAGGAATTGAAGTGACTGAAAGTATGCAATTGATTCGCTAATTTTGTGAGACTGCTTCATTGATCCACTGAAAGCCACTCGGACCACAGTAATGTCCTACTGCATTATCCTTCTATTCTTTCACAAAATAAGATGTTGGCGTTCAGATTTTCGGTAGAATTTATCCCTGTTGTGGACTAAGATGCATAATAGGTGAAATCCTCTCGTCTTTTAGATGTTTTTCTCTAAAATTTCATCCGCCTTAAGATCATAACCTACTAAGATCTGTCCCTTTTTTCCGCTTCTTATCAGTACTGAAAACAGCTCCTGTGCTTTAAACTAAGAATCACAAACACTTCAATGGATAAAACAATTGTCATTCCAAACAGTTCGTTCTTTAAATTAAAGTAATAATAATGAAAAAGTAAAAGTAGGCTACAGGAACTTCATTATGTCTACTATATATTATTGAAATAACAACCAGATTCTCTTTTAAAAGTTATAGGATTGAATCTCTAATTGCTCATCTTTCAGAACTTTTATATTATTAATATTTTATAGTTTATGTTATATGACTGAACCTTAATAGGTGAAAGACTATCCACCATTTTTCTCCCCAAAGCTAGCGGCTGTTATGAAGAATCTCTTCCCTAAGATGGAAAACTGTATGTAACATTCACAGCTTCAAGGGACAAGGAGGAGTTCTTTTCAGGCTTTTTCCAGTTTATAGCTTTAAAATCCTGCCATTGCGATGCTTCCGTAATAACAAACATTCAAATTTTCTGTTCATGTAGGTGTTGCCCGGGTCATTGGAAAGCCCTTACAAATGTGAGGCTCAAGGGAGTCGCTTTCAATTTCTTCCATCATCTTCGGCGTACGTAATGTTCCTTTTTCTTTTCTTTTCTTTTCTATTTATAAAAATTAAGCTTATTGGTGAC

mRNA sequence

TATCAATTGTCAATATTCTCTCTCTCTCCCCCTCTCTCTCGATTTTCCGTTTCACATTCGAAGTGCTTCGTTCCGCAGGCGGGGCCTCCGACAGGAAAAAAAAAAATGCCAAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATTTTGCGTGTTTCAGGATTTCGCACCGGAAGTTTCATTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGATACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGAAGAAAGCAACTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGTGAAAGACTATCCACCATTTTTCTCCCCAAAGCTAGCGGCTGTTATGAAGAATCTCTTCCCTAAGATGGAAAACTGTATGTGTTGCCCGGGTCATTGGAAAGCCCTTACAAATGTGAGGCTCAAGGGAGTCGCTTTCAATTTCTTCCATCATCTTCGGCGTACGTAATGTTCCTTTTTCTTTTCTTTTCTTTTCTATTTATAAAAATTAAGCTTATTGGTGAC

Coding sequence (CDS)

ATGCCAAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATTTTGCGTGTTTCAGGATTTCGCACCGGAAGTTTCATTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGATACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGAAGAAAGCAACTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGTGAAAGACTATCCACCATTTTTCTCCCCAAAGCTAGCGGCTGTTATGAAGAATCTCTTCCCTAAGATGGAAAACTGTATGTGTTGCCCGGGTCATTGGAAAGCCCTTACAAATGTGAGGCTCAAGGGAGTCGCTTTCAATTTCTTCCATCATCTTCGGCGTACGTAA

Protein sequence

MPNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYPPFFSPKLAAVMKNLFPKMENCMCCPGHWKALTNVRLKGVAFNFFHHLRRT

Homology

[Close]

BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match: A0A5D3CIQ2 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001120 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
           NANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   
Sbjct: 5   NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64

Query: 63  RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
           + SN                  QAKKATEAAL DN+QL+  ++P
Sbjct: 65  QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108

[Close]

BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match: A0A1S3BKQ4 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
           NANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   
Sbjct: 5   NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64

Query: 63  RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
           + SN                  QAKKATEAAL DN+QL+  ++P
Sbjct: 65  QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108

[Close]

BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match: A0A1S3BK29 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
           NANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   
Sbjct: 5   NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64

Query: 63  RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
           + SN                  QAKKATEAAL DN+QL+  ++P
Sbjct: 65  QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108

[Close]

BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match: A0A6J1E988 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431057 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 49/103 (47.57%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------- 62
           NANF   STIP A+LPL S  +ACFR+SHRK H S  SSS++ FMA RNL          
Sbjct: 5   NANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRE 64

Query: 63  -----GEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYP 91
                 +FD            QAKKATEAAL DN+QL+  ++P
Sbjct: 65  SSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFP 107

[Close]

BLAST of CmaCh06G006110 vs. ExPASy TrEMBL
Match: A0A6J1HNL5 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465233 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 47/103 (45.63%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------- 62
           NA F   STIP A+LPL S  +ACFR+ HRK H S  SSS++ FMA RNL          
Sbjct: 5   NAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRE 64

Query: 63  -----GEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYP 91
                 +FD            QAKKATEAAL DN+QL+  ++P
Sbjct: 65  SSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFP 107

[Close]

BLAST of CmaCh06G006110 vs. NCBI nr
Match: KAG7028235.1 (hypothetical protein SDJN02_09416 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.4 bits (459), Expect = 5.3e-42
Identity = 95/111 (85.59%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
           NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF
Sbjct: 5   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 64

Query: 63  RLSNKLQAKKATEAALSDNEQLI------------VKDYPPFFSPKLAAVM 102
           RLSNKLQAKKA EAALSDNEQLI            VKDYPPFF  KLAAV+
Sbjct: 65  RLSNKLQAKKAIEAALSDNEQLIENFQPLDLNQIQVKDYPPFFHLKLAAVL 115

[Close]

BLAST of CmaCh06G006110 vs. NCBI nr
Match: KAG6596702.1 (COBW domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 84/133 (63.16%), Postives = 89/133 (66.92%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGE-------- 62
           NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLG+        
Sbjct: 429 NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGDLIFLIKYG 488

Query: 63  FDTVMFGFRL---------SNKLQAKKATEAALSDNEQL------IVKDYPPFFSPKLAA 113
           FD   F F L         S     +  T    SD + +       VKDYPPFF  KLAA
Sbjct: 489 FDHFCFSFSLLGADFFTVTSMLFDREFPTVGLESDPDHITLSTRTTVKDYPPFFHLKLAA 548

[Close]

BLAST of CmaCh06G006110 vs. NCBI nr
Match: XP_023553103.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023553104.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 50/103 (48.54%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------- 62
           NANF   STIP A+LPL S  FACFR+SHRK H S  SSS++ FMA RNL          
Sbjct: 5   NANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRE 64

Query: 63  -----GEFDTVMFGFRLSNKLQAKKATEAALSDNEQLIVKDYP 91
                 +FD            QAKKATEAAL DN+QL+  ++P
Sbjct: 65  SSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFP 107

[Close]

BLAST of CmaCh06G006110 vs. NCBI nr
Match: XP_008448608.1 (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
           NANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   
Sbjct: 5   NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64

Query: 63  RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
           + SN                  QAKKATEAAL DN+QL+  ++P
Sbjct: 65  QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108

[Close]

BLAST of CmaCh06G006110 vs. NCBI nr
Match: KAA0052999.1 (protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK11455.1 protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 3   NANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGF 62
           NANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   
Sbjct: 5   NANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPSLSNR 64

Query: 63  RLSNKL----------------QAKKATEAALSDNEQLIVKDYP 91
           + SN                  QAKKATEAAL DN+QL+  ++P
Sbjct: 65  QNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108

The following BLAST results are available for this feature:

BLAST of CmaCh06G006110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIQ2	1.2e-10	49.04	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BKQ4	1.2e-10	49.04	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=365...	[more]
A0A1S3BK29	1.2e-10	49.04	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=365...	[more]
A0A6J1E988	1.5e-10	47.57	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HNL5	2.9e-09	45.63	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CmaCh06G006110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028235.1	5.3e-42	85.59	hypothetical protein SDJN02_09416 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596702.1	1.1e-31	63.16	COBW domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023553103.1	1.4e-10	48.54	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_008448608.1	2.4e-10	49.04	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis me...	[more]
KAA0052999.1	2.4e-10	49.04	protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK11455.1 protein L...	[more]

BLAST of CmaCh06G006110 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006110.1	CmaCh06G006110.1	mRNA