Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCCCAACAAGCGGTACCGTGTCTACTACGACATCAACCAAATGGGTGTGGTTTATAAGAACCAACGGCTTGAGACACAGTGGCTGCCAGCGTTCGCCCAAGGAACAAAGAGCACGGTGGTCCTCAACTCCAGGAAGGTCGAGGGTCAGCAGTTGGTGCTCTTGGCGGCCATGAATTTGCTGAGTTTAACGCTGAGAAAAGCTCCGGCATTTACCCTATTGATGTCAAGTTCTTTTTCCGGTTGAGGATGAAGTCCGGTAAGGTGGTCTTGAAATTGAATCCCACGGTGTACTGTGGATTGAAGGTTCCTTTGATTAACGGTAAATCTCGGCGGCCTGGTGTAATGAGGATTCATGCTGCCACGGCTTGCGATTTCAAATTCTGA
mRNA sequence
ATGAAACCCCAACAAGCGGTACCGTGTCTACTACGACATCAACCAAATGGGTGTGTGGCTGCCAGCGTTCGCCCAAGGAACAAAGAGCACGGTGGTCCTCAACTCCAGGAAGGTCGAGGGTCAGCAGTTGGTGCTCTTGGCGGCCATGAATTTGCTGAGTTTAACGCTGAGAAAAGCTCCGGCATTTACCCTATTGATGTCAAGTTCTTTTTCCGGTTGAGGATGAAGTCCGGTAAGGTGGTCTTGAAATTGAATCCCACGGTGTACTGTGGATTGAAGGTTCCTTTGATTAACGGTAAATCTCGGCGGCCTGGTGTAATGAGGATTCATGCTGCCACGGCTTGCGATTTCAAATTCTGA
Coding sequence (CDS)
ATGAAACCCCAACAAGCGGTACCGTGTCTACTACGACATCAACCAAATGGGTGTGTGGCTGCCAGCGTTCGCCCAAGGAACAAAGAGCACGGTGGTCCTCAACTCCAGGAAGGTCGAGGGTCAGCAGTTGGTGCTCTTGGCGGCCATGAATTTGCTGAGTTTAACGCTGAGAAAAGCTCCGGCATTTACCCTATTGATGTCAAGTTCTTTTTCCGGTTGAGGATGAAGTCCGGTAAGGTGGTCTTGAAATTGAATCCCACGGTGTACTGTGGATTGAAGGTTCCTTTGATTAACGGTAAATCTCGGCGGCCTGGTGTAATGAGGATTCATGCTGCCACGGCTTGCGATTTCAAATTCTGA
Protein sequence
MKPQQAVPCLLRHQPNGCVAASVRPRNKEHGGPQLQEGRGSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLINGKSRRPGVMRIHAATACDFKF
Homology
BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match:
A0A5A7TKJ3 (Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004480 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + L E EFNAEK++GIY IDVKFFFRLRMKSG+VVLK P VYCGLKVPL G
Sbjct: 142 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 201
Query: 100 KSRRPGVMRIHAATACDFKF 120
P ++ + + TACDF F
Sbjct: 202 SDIDPNMISLFSNTACDFSF 219
BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match:
A0A1S3B8E0 (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487150 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + L E EFNAEK++GIY IDVKFFFRLRMKSG+VVLK P VYCGLKVPL G
Sbjct: 141 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 200
Query: 100 KSRRPGVMRIHAATACDFKF 120
P ++ + + TACDF F
Sbjct: 201 SDIDPNMISLFSNTACDFSF 218
BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match:
A0A6J1J6T7 (NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111481750 PE=4 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + L G E EFN+EK+ G YPIDVKFFFRLRMKSG+VVLKL P V+CGL+VPL N
Sbjct: 139 GQRLILLAGDEIVEFNSEKAEGQYPIDVKFFFRLRMKSGEVVLKLKPKVHCGLRVPLSNA 198
Query: 100 KSRRPGVMRIHAATACDFKF 120
P TACDF+F
Sbjct: 199 ----PKSFVFFPNTACDFQF 214
BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match:
A0A0A0LB18 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779000 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 5.1e-15
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + L E EFNAEK++GIY IDVKFFFRLRMKSG+VVLK P VYCGLKVPL G
Sbjct: 142 GQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 201
Query: 100 KSRRPGVMRIHAATACDFKF 120
P + + + T CDF F
Sbjct: 202 SDIDPKSISLFSNTDCDFSF 219
BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match:
A0A6J1F4Y9 (NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111442212 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 5.1e-15
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + L G E EFN+EK+ G YPIDVKFFFRLRMKSG+VVLKL P V+CGL+VPL N
Sbjct: 139 GQRLILLAGDEIVEFNSEKAEGQYPIDVKFFFRLRMKSGEVVLKLKPKVHCGLRVPLSNA 198
Query: 100 KSRRPGVMRIHAATACDFKF 120
V TACDF+F
Sbjct: 199 PKSFSFV--FFPNTACDFQF 216
BLAST of CmaCh06G005150 vs. NCBI nr
Match:
XP_023539524.1 (NDR1/HIN1-like protein 10 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 154.5 bits (389), Expect = 5.9e-34
Identity = 74/80 (92.50%), Postives = 75/80 (93.75%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + LGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSG VVLKLNPTVYCGLKVPLING
Sbjct: 152 GQQLVLLGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGTVVLKLNPTVYCGLKVPLING 211
Query: 100 KSRRPGVMRIHAATACDFKF 120
KSRRPGVMRIHAATACDFKF
Sbjct: 212 KSRRPGVMRIHAATACDFKF 231
BLAST of CmaCh06G005150 vs. NCBI nr
Match:
KAG6596609.1 (NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 72/80 (90.00%), Postives = 73/80 (91.25%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + LGG EF EFNAEKSSGIYPIDVKFFFRLRMKSG VVLKLNPTVYCGLKVPLING
Sbjct: 152 GQQLVLLGGDEFVEFNAEKSSGIYPIDVKFFFRLRMKSGTVVLKLNPTVYCGLKVPLING 211
Query: 100 KSRRPGVMRIHAATACDFKF 120
KSRRPGVMRIHAATACDFKF
Sbjct: 212 KSRRPGVMRIHAATACDFKF 231
BLAST of CmaCh06G005150 vs. NCBI nr
Match:
XP_008443594.1 (PREDICTED: protein YLS9-like [Cucumis melo])
HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + L E EFNAEK++GIY IDVKFFFRLRMKSG+VVLK P VYCGLKVPL G
Sbjct: 141 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 200
Query: 100 KSRRPGVMRIHAATACDFKF 120
P ++ + + TACDF F
Sbjct: 201 SDIDPNMISLFSNTACDFSF 218
BLAST of CmaCh06G005150 vs. NCBI nr
Match:
KAA0043822.1 (protein YLS9-like [Cucumis melo var. makuwa] >TYK25310.1 protein YLS9-like [Cucumis melo var. makuwa])
HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 40 GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
G + L E EFNAEK++GIY IDVKFFFRLRMKSG+VVLK P VYCGLKVPL G
Sbjct: 142 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 201
Query: 100 KSRRPGVMRIHAATACDFKF 120
P ++ + + TACDF F
Sbjct: 202 SDIDPNMISLFSNTACDFSF 219
BLAST of CmaCh06G005150 vs. NCBI nr
Match:
XP_038906030.1 (NDR1/HIN1-like protein 10 [Benincasa hispida])
HSP 1 Score: 92.0 bits (227), Expect = 3.6e-15
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 0
Query: 50 EFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLINGKSRRPGVMRI 109
E E+NAEK++ +Y IDVKFFFRLRMKSG+VVLKL P VYCGLKVPL NG P +
Sbjct: 149 EIVEYNAEKAAALYSIDVKFFFRLRMKSGEVVLKLRPKVYCGLKVPLSNG----PNSVFF 208
Query: 110 HAATACDFKF 120
TACDF F
Sbjct: 209 FPNTACDFSF 214
BLAST of CmaCh06G005150 vs. TAIR 10
Match:
AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )
HSP 1 Score: 41.6 bits (96), Expect = 5.2e-04
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 0
Query: 37 EGRGSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKV-VLKLNPTVYCGLKVP 96
E G + LG +F ++ SG+Y IDVK F+LR K G + + P + C LKVP
Sbjct: 158 ELNGQKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVP 217
Query: 97 LINGKS 102
L S
Sbjct: 218 LSTSSS 223
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TKJ3 | 1.6e-16 | 60.00 | Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00... | [more] |
| A0A1S3B8E0 | 1.6e-16 | 60.00 | protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487150 PE=4 SV=1 | [more] |
| A0A6J1J6T7 | 2.3e-15 | 58.75 | NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111481750 PE=4 SV=1 | [more] |
| A0A0A0LB18 | 5.1e-15 | 58.75 | LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779000 PE=4 ... | [more] |
| A0A6J1F4Y9 | 5.1e-15 | 58.75 | NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111442212 PE=4 SV=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_023539524.1 | 5.9e-34 | 92.50 | NDR1/HIN1-like protein 10 [Cucurbita pepo subsp. pepo] | [more] |
| KAG6596609.1 | 1.9e-32 | 90.00 | NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| XP_008443594.1 | 3.3e-16 | 60.00 | PREDICTED: protein YLS9-like [Cucumis melo] | [more] |
| KAA0043822.1 | 3.3e-16 | 60.00 | protein YLS9-like [Cucumis melo var. makuwa] >TYK25310.1 protein YLS9-like [Cucu... | [more] |
| XP_038906030.1 | 3.6e-15 | 64.29 | NDR1/HIN1-like protein 10 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G35460.1 | 5.2e-04 | 37.88 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | [more] |
