CmaCh06G005150 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G005150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NDR1/HIN1-like protein 10
Location	Cma_Chr06: 2420615 .. 2421004 (-)
RNA-Seq Expression	CmaCh06G005150
Synteny	CmaCh06G005150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCCCAACAAGCGGTACCGTGTCTACTACGACATCAACCAAATGGGTGTGGTTTATAAGAACCAACGGCTTGAGACACAGTGGCTGCCAGCGTTCGCCCAAGGAACAAAGAGCACGGTGGTCCTCAACTCCAGGAAGGTCGAGGGTCAGCAGTTGGTGCTCTTGGCGGCCATGAATTTGCTGAGTTTAACGCTGAGAAAAGCTCCGGCATTTACCCTATTGATGTCAAGTTCTTTTTCCGGTTGAGGATGAAGTCCGGTAAGGTGGTCTTGAAATTGAATCCCACGGTGTACTGTGGATTGAAGGTTCCTTTGATTAACGGTAAATCTCGGCGGCCTGGTGTAATGAGGATTCATGCTGCCACGGCTTGCGATTTCAAATTCTGA

mRNA sequence

ATGAAACCCCAACAAGCGGTACCGTGTCTACTACGACATCAACCAAATGGGTGTGTGGCTGCCAGCGTTCGCCCAAGGAACAAAGAGCACGGTGGTCCTCAACTCCAGGAAGGTCGAGGGTCAGCAGTTGGTGCTCTTGGCGGCCATGAATTTGCTGAGTTTAACGCTGAGAAAAGCTCCGGCATTTACCCTATTGATGTCAAGTTCTTTTTCCGGTTGAGGATGAAGTCCGGTAAGGTGGTCTTGAAATTGAATCCCACGGTGTACTGTGGATTGAAGGTTCCTTTGATTAACGGTAAATCTCGGCGGCCTGGTGTAATGAGGATTCATGCTGCCACGGCTTGCGATTTCAAATTCTGA

Coding sequence (CDS)

ATGAAACCCCAACAAGCGGTACCGTGTCTACTACGACATCAACCAAATGGGTGTGTGGCTGCCAGCGTTCGCCCAAGGAACAAAGAGCACGGTGGTCCTCAACTCCAGGAAGGTCGAGGGTCAGCAGTTGGTGCTCTTGGCGGCCATGAATTTGCTGAGTTTAACGCTGAGAAAAGCTCCGGCATTTACCCTATTGATGTCAAGTTCTTTTTCCGGTTGAGGATGAAGTCCGGTAAGGTGGTCTTGAAATTGAATCCCACGGTGTACTGTGGATTGAAGGTTCCTTTGATTAACGGTAAATCTCGGCGGCCTGGTGTAATGAGGATTCATGCTGCCACGGCTTGCGATTTCAAATTCTGA

Protein sequence

MKPQQAVPCLLRHQPNGCVAASVRPRNKEHGGPQLQEGRGSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLINGKSRRPGVMRIHAATACDFKF

Homology

[Close]

BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match: A0A5A7TKJ3 (Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004480 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  L   E  EFNAEK++GIY IDVKFFFRLRMKSG+VVLK  P VYCGLKVPL  G
Sbjct: 142 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 201

Query: 100 KSRRPGVMRIHAATACDFKF 120
               P ++ + + TACDF F
Sbjct: 202 SDIDPNMISLFSNTACDFSF 219

[Close]

BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match: A0A1S3B8E0 (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487150 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  L   E  EFNAEK++GIY IDVKFFFRLRMKSG+VVLK  P VYCGLKVPL  G
Sbjct: 141 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 200

Query: 100 KSRRPGVMRIHAATACDFKF 120
               P ++ + + TACDF F
Sbjct: 201 SDIDPNMISLFSNTACDFSF 218

[Close]

BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match: A0A6J1J6T7 (NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111481750 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  L G E  EFN+EK+ G YPIDVKFFFRLRMKSG+VVLKL P V+CGL+VPL N 
Sbjct: 139 GQRLILLAGDEIVEFNSEKAEGQYPIDVKFFFRLRMKSGEVVLKLKPKVHCGLRVPLSNA 198

Query: 100 KSRRPGVMRIHAATACDFKF 120
               P        TACDF+F
Sbjct: 199 ----PKSFVFFPNTACDFQF 214

[Close]

BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match: A0A0A0LB18 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779000 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.1e-15
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  L   E  EFNAEK++GIY IDVKFFFRLRMKSG+VVLK  P VYCGLKVPL  G
Sbjct: 142 GQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 201

Query: 100 KSRRPGVMRIHAATACDFKF 120
               P  + + + T CDF F
Sbjct: 202 SDIDPKSISLFSNTDCDFSF 219

[Close]

BLAST of CmaCh06G005150 vs. ExPASy TrEMBL
Match: A0A6J1F4Y9 (NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111442212 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.1e-15
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  L G E  EFN+EK+ G YPIDVKFFFRLRMKSG+VVLKL P V+CGL+VPL N 
Sbjct: 139 GQRLILLAGDEIVEFNSEKAEGQYPIDVKFFFRLRMKSGEVVLKLKPKVHCGLRVPLSNA 198

Query: 100 KSRRPGVMRIHAATACDFKF 120
                 V      TACDF+F
Sbjct: 199 PKSFSFV--FFPNTACDFQF 216

[Close]

BLAST of CmaCh06G005150 vs. NCBI nr
Match: XP_023539524.1 (NDR1/HIN1-like protein 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-34
Identity = 74/80 (92.50%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  LGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSG VVLKLNPTVYCGLKVPLING
Sbjct: 152 GQQLVLLGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGTVVLKLNPTVYCGLKVPLING 211

Query: 100 KSRRPGVMRIHAATACDFKF 120
           KSRRPGVMRIHAATACDFKF
Sbjct: 212 KSRRPGVMRIHAATACDFKF 231

[Close]

BLAST of CmaCh06G005150 vs. NCBI nr
Match: KAG6596609.1 (NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 72/80 (90.00%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  LGG EF EFNAEKSSGIYPIDVKFFFRLRMKSG VVLKLNPTVYCGLKVPLING
Sbjct: 152 GQQLVLLGGDEFVEFNAEKSSGIYPIDVKFFFRLRMKSGTVVLKLNPTVYCGLKVPLING 211

Query: 100 KSRRPGVMRIHAATACDFKF 120
           KSRRPGVMRIHAATACDFKF
Sbjct: 212 KSRRPGVMRIHAATACDFKF 231

[Close]

BLAST of CmaCh06G005150 vs. NCBI nr
Match: XP_008443594.1 (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  L   E  EFNAEK++GIY IDVKFFFRLRMKSG+VVLK  P VYCGLKVPL  G
Sbjct: 141 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 200

Query: 100 KSRRPGVMRIHAATACDFKF 120
               P ++ + + TACDF F
Sbjct: 201 SDIDPNMISLFSNTACDFSF 218

[Close]

BLAST of CmaCh06G005150 vs. NCBI nr
Match: KAA0043822.1 (protein YLS9-like [Cucumis melo var. makuwa] >TYK25310.1 protein YLS9-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 40  GSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLING 99
           G  +  L   E  EFNAEK++GIY IDVKFFFRLRMKSG+VVLK  P VYCGLKVPL  G
Sbjct: 142 GQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPL--G 201

Query: 100 KSRRPGVMRIHAATACDFKF 120
               P ++ + + TACDF F
Sbjct: 202 SDIDPNMISLFSNTACDFSF 219

[Close]

BLAST of CmaCh06G005150 vs. NCBI nr
Match: XP_038906030.1 (NDR1/HIN1-like protein 10 [Benincasa hispida])

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-15
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 50  EFAEFNAEKSSGIYPIDVKFFFRLRMKSGKVVLKLNPTVYCGLKVPLINGKSRRPGVMRI 109
           E  E+NAEK++ +Y IDVKFFFRLRMKSG+VVLKL P VYCGLKVPL NG    P  +  
Sbjct: 149 EIVEYNAEKAAALYSIDVKFFFRLRMKSGEVVLKLRPKVYCGLKVPLSNG----PNSVFF 208

Query: 110 HAATACDFKF 120
              TACDF F
Sbjct: 209 FPNTACDFSF 214

[Close]

BLAST of CmaCh06G005150 vs. TAIR 10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 41.6 bits (96), Expect = 5.2e-04
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 37  EGRGSAVGALGGHEFAEFNAEKSSGIYPIDVKFFFRLRMKSGKV-VLKLNPTVYCGLKVP 96
           E  G  +  LG     +F  ++ SG+Y IDVK  F+LR K G +    + P + C LKVP
Sbjct: 158 ELNGQKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVP 217

Query: 97  LINGKS 102
           L    S
Sbjct: 218 LSTSSS 223

The following BLAST results are available for this feature:

BLAST of CmaCh06G005150 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G005150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKJ3	1.6e-16	60.00	Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A1S3B8E0	1.6e-16	60.00	protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103487150 PE=4 SV=1	[more]
A0A6J1J6T7	2.3e-15	58.75	NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111481750 PE=4 SV=1	[more]
A0A0A0LB18	5.1e-15	58.75	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779000 PE=4 ...	[more]
A0A6J1F4Y9	5.1e-15	58.75	NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111442212 PE=4 SV=...	[more]

BLAST of CmaCh06G005150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539524.1	5.9e-34	92.50	NDR1/HIN1-like protein 10 [Cucurbita pepo subsp. pepo]	[more]
KAG6596609.1	1.9e-32	90.00	NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008443594.1	3.3e-16	60.00	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
KAA0043822.1	3.3e-16	60.00	protein YLS9-like [Cucumis melo var. makuwa] >TYK25310.1 protein YLS9-like [Cucu...	[more]
XP_038906030.1	3.6e-15	64.29	NDR1/HIN1-like protein 10 [Benincasa hispida]	[more]

BLAST of CmaCh06G005150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35460.1	5.2e-04	37.88	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G005150.1	CmaCh06G005150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0016021	integral component of membrane