Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTGAGACTACGTGGAGTTCAGCCGCCACATCCAGATCCTGGGGCTTGCGTTCGAAGAAAACTAGGGCATCAAACTATTGTCATCGCGACGATATTATTCAGGTAACGATTTCCGAAGTTCATCTGTTCCGATCGAATTTCTTCGGTTGTAAATCCGTTCGTCTCTGCATTATTTTCCATTGATTGAAGTGTTTTGCTTATGTTCTTATCTGCTTTACTTTTTTCGAGTATTGTCATCGCCGAGTTTTTTAGTTCATGGGAGGAAGATTAAATTAGCTTCTGTAATCCTCTTCTATCACTTCAGGAACACGCATCAAGCAGGCATCTGAATCATTATTGTTTTATTTCGATCCGTGGAAACGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGGTAATTGAGTTTTAAATTACAACCTTGGTCTCTGGGTTTTGAGAAGGTTACAATTTAGTCCTATCATTTGATAGAACCCTAAAAAATAGTTCATATGAGGATTTTAGCAATCCATGGGGACTATTATGAGCATCCATAGGGACTAATTAGTTCATACAGATGGAAACCTAGATTCAGAACGTAACCCGTTAGTATGGTTATCATGCATACAATAAGAAGCTTCATTCTCTGGCCGGAGGGACCAATTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAGATATCCTCAGATTTTCTTTTATGTTTATCTGCTGCCCAAATGGTTGGATGTGCAGATGTGGAGATCTGAGAAAATTTTGCTATAGATTCATTTATCTTTCTTCTACAGAATTGATGTCTAGTTATATATGTTTGTTGAAGCGCTGCTAATATTAAATGAAATATAAACATACTAACAAAGACATTAGGTGTCTTTTTAAAACAAAAAAAATTATGAAAAGTTATTTTAGTGGAAGCATGAATTATACTAAAGCAGCAGGGCAGGAAAGATTCATTGAAGATTAAGACGAAAGCTTGAAACTACAAATAAAAAAAGCTTTTGAAAGCTTACACCTAGATCGAACCACTAACACAACGTGATCCCATAAAACAGCAAAGGCTCTCCCTTCACTCAACCTGATATTGGGAAGATCAGTGGCTTAATGGTAGTGCATTGCTCTCTAATTTTCCTAGGCTATCAGAAAAGTATTCATCAACTCATCCACCAATGGAATCAATTTTAAAGTTTGTTGGTACAAAATTGTGGAGTCTTGAAGTCCCATAGCAAGTTTTTTTTTTTTCATGTGAACCATATTTAGTGGCAGAACCATTAACGATACTTCACAAGAAAATTCCCAACAACTCTCTTTTTCCTGGAAAGTGTATGCTGTGCAACAGATCAAAACCATATATAAAACTATGGTAGGAAAATTTGGTGGCTGTTTGCAACCCATTCTCATTTCAATCTGCCCTTCGACCATTAATCATAATTCTAGTGTTGTGGAGAACTATGGCTTGTAGGTACCCCAAGATTTTTCAAGGGAAGTAAAATATTTTCCATCTATTGTTATGATCCGAATTAAAATAAAAAATGTTCAATTCCATTTTGATATTACTTCACTTCCACGGAAGAAAAAAAGGATTAAAGAAAAATCACCAGAAATGGCCGTGGTGAACCCACAACCTCCACCACAAACATTCCACAGAAGAGTGAGCTCTCGAGCCTTCTTGATAAACCATTCTCGATATGGTGACTGAGAGAGAATCTTGATGAGCCGAGAACTATCTGCGCGAGAGAATTAGCATTAGAGAGAGTATCGGTTAGGGCTGTGTGAAAACAGAATAAGAAAAGATAATCAAAAGAGTAGCTCTTTTTGTAGTTTCTCCAATTTTGGTCTATTTTTGGAATTTTTTTTTTTAATTTGGAAACAAGAAACAGAATCTCTTATCAAACAAGCATGGTCCGTTCAGGTATTCTTTCCCTAGCATTTCTGCCGTTGAATTGAGGACGTTCATGCTCAATGACAACTGAAAAGTCACATTTGTCTGTATTTACCGTTCATAGGATGTTTGTCTGCAGGATGCTTACAGTTCGTTGTTGAAAAATTATTTCATTCCCATTTTTCCATTTTTTGCAGCCGTTCATTTCAAAGGTTTGCTGTGAGAACATCAAAGCAAATTGAGGATATATCTACCAAAGGTAGAAACTTAACTGCTTTTTGTTTCATTCATTACAATTTTTACTTGCGGTATTTATAGTTGAGCTGGTTTAACTTTTGACTTGGTAATTGTCTTGCAGCTGCCCAGAAGAAGCAAGAACTTGCAGAACAGATGAAAGATCTCTCCAAAAATTTTGAGGTGAGAATCATCTTACAAATCAGATCATTTAAAAAAAATAAAAAAAAACTTGAACAGCTTGGACGTTTCCTCACACCTATATGATCTTTTGCAGTCTTTCAAGAACCAATAATGCCAGAGCGGAACGTGTTATTACAGCATGATGTAAATCCAATCTATTTTGCACGTTTTGACATAATTGCAGCTGTACTTATAGTGGTCGTAGAGTTGTACTTCAAAAGTTGTTCACGGTCTCTTTTCATATGTTGAATAATTCTATGACTGTCTATTTCAGATCTGTACTTATAGTCGACAATGGTTAGTCAACGGTGCATATGTTTGAAGCCAATTTTCCCTTCAACTGTATGCATTTGCATTCGTCTGTAACGCAAGCGTCGAACTTTTAAACATATCTTCAAACAAAGCAAAGCCATAGCTATGAACAGTGGAACACAGATTCAATGTTATAGCTATGTTAAAGCATTTTTGTATATATTTTGAAGGAAACAGCATTCCCACTCCCAAAA
mRNA sequence
AAATTGAGACTACGTGGAGTTCAGCCGCCACATCCAGATCCTGGGGCTTGCGTTCGAAGAAAACTAGGGCATCAAACTATTGTCATCGCGACGATATTATTCAGGAACACGCATCAAGCAGGCATCTGAATCATTATTGTTTTATTTCGATCCGTGGAAACGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCATTTCAAAGGTTTGCTGTGAGAACATCAAAGCAAATTGAGGATATATCTACCAAAGCTGCCCAGAAGAAGCAAGAACTTGCAGAACAGATGAAAGATCTCTCCAAAAATTTTGAGTCTTTCAAGAACCAATAATGCCAGAGCGGAACGTGTTATTACAGCATGATGTAAATCCAATCTATTTTGCACGTTTTGACATAATTGCAGCTGTACTTATAGTGGTCGTAGAGTTGTACTTCAAAAGTTGTTCACGGTCTCTTTTCATATGTTGAATAATTCTATGACTGTCTATTTCAGATCTGTACTTATAGTCGACAATGGTTAGTCAACGGTGCATATGTTTGAAGCCAATTTTCCCTTCAACTGTATGCATTTGCATTCGTCTGTAACGCAAGCGTCGAACTTTTAAACATATCTTCAAACAAAGCAAAGCCATAGCTATGAACAGTGGAACACAGATTCAATGTTATAGCTATGTTAAAGCATTTTTGTATATATTTTGAAGGAAACAGCATTCCCACTCCCAAAA
Coding sequence (CDS)
ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCATTTCAAAGGTTTGCTGTGAGAACATCAAAGCAAATTGAGGATATATCTACCAAAGCTGCCCAGAAGAAGCAAGAACTTGCAGAACAGATGAAAGATCTCTCCAAAAATTTTGAGTCTTTCAAGAACCAATAA
Protein sequence
MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKDLSKNFESFKNQ
Homology
BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match:
A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 7.0e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
Query: 61 LSKNFESFKNQ 72
LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71
BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match:
A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 7.0e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
Query: 61 LSKNFESFKNQ 72
LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71
BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match:
A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
Query: 61 LSKNFESFKNQ 72
LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71
BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match:
A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAA+KKQELAEQ+KD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60
Query: 61 LSKNFESFKNQ 72
LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71
BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match:
A0A1S3B691 (uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 9.4e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAV+TSKQIEDISTKAAQKKQELAEQ+KD
Sbjct: 1 MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
Query: 61 LSKNFESFKN 71
SKNF+SFKN
Sbjct: 61 FSKNFDSFKN 70
BLAST of CmaCh06G002200 vs. NCBI nr
Match:
XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
Query: 61 LSKNFESFKNQ 72
LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71
BLAST of CmaCh06G002200 vs. NCBI nr
Match:
XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 126.7 bits (317), Expect = 7.9e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
Query: 61 LSKNFESFKNQ 72
LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71
BLAST of CmaCh06G002200 vs. NCBI nr
Match:
XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])
HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAA+KKQELAEQ+KD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60
Query: 61 LSKNFESFKNQ 72
LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71
BLAST of CmaCh06G002200 vs. NCBI nr
Match:
XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])
HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIE+IS KAAQKKQELAEQ+KD
Sbjct: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKD 60
Query: 61 LSKNFESFKNQ 72
LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71
BLAST of CmaCh06G002200 vs. NCBI nr
Match:
XP_023527736.1 (uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
MAGGNFMHRVVSYLVNEV+VNSLANSR+FQRFAVRTSKQIEDIS KA+QKKQELAEQ+KD
Sbjct: 1 MAGGNFMHRVVSYLVNEVIVNSLANSRTFQRFAVRTSKQIEDISNKASQKKQELAEQVKD 60
Query: 61 LSKNFESFKNQ 72
LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71
BLAST of CmaCh06G002200 vs. TAIR 10
Match:
AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 79.0 bits (193), Expect = 1.8e-15
Identity = 38/67 (56.72%), Postives = 56/67 (83.58%), Query Frame = 0
Query: 3 GGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKDLS 62
GGNF+ RV+SY+ NE +VN LANS +FQRFAVRTSK+IE++S AA+ ++++A+QM++ +
Sbjct: 4 GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63
Query: 63 KNFESFK 70
KN +S K
Sbjct: 64 KNIDSTK 70
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1I5H8 | 7.0e-28 | 100.00 | uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102... | [more] |
| A0A6J1GCB5 | 7.0e-28 | 100.00 | uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528... | [more] |
| A0A6J1F5E7 | 3.8e-26 | 94.37 | uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424... | [more] |
| A0A6J1IZW4 | 1.1e-25 | 92.96 | uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182... | [more] |
| A0A1S3B691 | 9.4e-25 | 91.43 | uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022949523.1 | 1.4e-27 | 100.00 | uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar... | [more] |
| XP_022935686.1 | 7.9e-26 | 94.37 | uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet... | [more] |
| XP_022983627.1 | 2.3e-25 | 92.96 | uncharacterized protein LOC111482182 [Cucurbita maxima] | [more] |
| XP_038903248.1 | 2.3e-25 | 92.96 | uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara... | [more] |
| XP_023527736.1 | 3.0e-25 | 91.55 | uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G01350.1 | 1.8e-15 | 56.72 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
