CmaCh06G002200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Phycobilisome rod-core linker polypeptide CpcG2 like
Location	Cma_Chr06: 1126466 .. 1129310 (-)
RNA-Seq Expression	CmaCh06G002200
Synteny	CmaCh06G002200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGAGACTACGTGGAGTTCAGCCGCCACATCCAGATCCTGGGGCTTGCGTTCGAAGAAAACTAGGGCATCAAACTATTGTCATCGCGACGATATTATTCAGGTAACGATTTCCGAAGTTCATCTGTTCCGATCGAATTTCTTCGGTTGTAAATCCGTTCGTCTCTGCATTATTTTCCATTGATTGAAGTGTTTTGCTTATGTTCTTATCTGCTTTACTTTTTTCGAGTATTGTCATCGCCGAGTTTTTTAGTTCATGGGAGGAAGATTAAATTAGCTTCTGTAATCCTCTTCTATCACTTCAGGAACACGCATCAAGCAGGCATCTGAATCATTATTGTTTTATTTCGATCCGTGGAAACGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGGTAATTGAGTTTTAAATTACAACCTTGGTCTCTGGGTTTTGAGAAGGTTACAATTTAGTCCTATCATTTGATAGAACCCTAAAAAATAGTTCATATGAGGATTTTAGCAATCCATGGGGACTATTATGAGCATCCATAGGGACTAATTAGTTCATACAGATGGAAACCTAGATTCAGAACGTAACCCGTTAGTATGGTTATCATGCATACAATAAGAAGCTTCATTCTCTGGCCGGAGGGACCAATTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAGATATCCTCAGATTTTCTTTTATGTTTATCTGCTGCCCAAATGGTTGGATGTGCAGATGTGGAGATCTGAGAAAATTTTGCTATAGATTCATTTATCTTTCTTCTACAGAATTGATGTCTAGTTATATATGTTTGTTGAAGCGCTGCTAATATTAAATGAAATATAAACATACTAACAAAGACATTAGGTGTCTTTTTAAAACAAAAAAAATTATGAAAAGTTATTTTAGTGGAAGCATGAATTATACTAAAGCAGCAGGGCAGGAAAGATTCATTGAAGATTAAGACGAAAGCTTGAAACTACAAATAAAAAAAGCTTTTGAAAGCTTACACCTAGATCGAACCACTAACACAACGTGATCCCATAAAACAGCAAAGGCTCTCCCTTCACTCAACCTGATATTGGGAAGATCAGTGGCTTAATGGTAGTGCATTGCTCTCTAATTTTCCTAGGCTATCAGAAAAGTATTCATCAACTCATCCACCAATGGAATCAATTTTAAAGTTTGTTGGTACAAAATTGTGGAGTCTTGAAGTCCCATAGCAAGTTTTTTTTTTTTCATGTGAACCATATTTAGTGGCAGAACCATTAACGATACTTCACAAGAAAATTCCCAACAACTCTCTTTTTCCTGGAAAGTGTATGCTGTGCAACAGATCAAAACCATATATAAAACTATGGTAGGAAAATTTGGTGGCTGTTTGCAACCCATTCTCATTTCAATCTGCCCTTCGACCATTAATCATAATTCTAGTGTTGTGGAGAACTATGGCTTGTAGGTACCCCAAGATTTTTCAAGGGAAGTAAAATATTTTCCATCTATTGTTATGATCCGAATTAAAATAAAAAATGTTCAATTCCATTTTGATATTACTTCACTTCCACGGAAGAAAAAAAGGATTAAAGAAAAATCACCAGAAATGGCCGTGGTGAACCCACAACCTCCACCACAAACATTCCACAGAAGAGTGAGCTCTCGAGCCTTCTTGATAAACCATTCTCGATATGGTGACTGAGAGAGAATCTTGATGAGCCGAGAACTATCTGCGCGAGAGAATTAGCATTAGAGAGAGTATCGGTTAGGGCTGTGTGAAAACAGAATAAGAAAAGATAATCAAAAGAGTAGCTCTTTTTGTAGTTTCTCCAATTTTGGTCTATTTTTGGAATTTTTTTTTTTAATTTGGAAACAAGAAACAGAATCTCTTATCAAACAAGCATGGTCCGTTCAGGTATTCTTTCCCTAGCATTTCTGCCGTTGAATTGAGGACGTTCATGCTCAATGACAACTGAAAAGTCACATTTGTCTGTATTTACCGTTCATAGGATGTTTGTCTGCAGGATGCTTACAGTTCGTTGTTGAAAAATTATTTCATTCCCATTTTTCCATTTTTTGCAGCCGTTCATTTCAAAGGTTTGCTGTGAGAACATCAAAGCAAATTGAGGATATATCTACCAAAGGTAGAAACTTAACTGCTTTTTGTTTCATTCATTACAATTTTTACTTGCGGTATTTATAGTTGAGCTGGTTTAACTTTTGACTTGGTAATTGTCTTGCAGCTGCCCAGAAGAAGCAAGAACTTGCAGAACAGATGAAAGATCTCTCCAAAAATTTTGAGGTGAGAATCATCTTACAAATCAGATCATTTAAAAAAAATAAAAAAAAACTTGAACAGCTTGGACGTTTCCTCACACCTATATGATCTTTTGCAGTCTTTCAAGAACCAATAATGCCAGAGCGGAACGTGTTATTACAGCATGATGTAAATCCAATCTATTTTGCACGTTTTGACATAATTGCAGCTGTACTTATAGTGGTCGTAGAGTTGTACTTCAAAAGTTGTTCACGGTCTCTTTTCATATGTTGAATAATTCTATGACTGTCTATTTCAGATCTGTACTTATAGTCGACAATGGTTAGTCAACGGTGCATATGTTTGAAGCCAATTTTCCCTTCAACTGTATGCATTTGCATTCGTCTGTAACGCAAGCGTCGAACTTTTAAACATATCTTCAAACAAAGCAAAGCCATAGCTATGAACAGTGGAACACAGATTCAATGTTATAGCTATGTTAAAGCATTTTTGTATATATTTTGAAGGAAACAGCATTCCCACTCCCAAAA

mRNA sequence

AAATTGAGACTACGTGGAGTTCAGCCGCCACATCCAGATCCTGGGGCTTGCGTTCGAAGAAAACTAGGGCATCAAACTATTGTCATCGCGACGATATTATTCAGGAACACGCATCAAGCAGGCATCTGAATCATTATTGTTTTATTTCGATCCGTGGAAACGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCATTTCAAAGGTTTGCTGTGAGAACATCAAAGCAAATTGAGGATATATCTACCAAAGCTGCCCAGAAGAAGCAAGAACTTGCAGAACAGATGAAAGATCTCTCCAAAAATTTTGAGTCTTTCAAGAACCAATAATGCCAGAGCGGAACGTGTTATTACAGCATGATGTAAATCCAATCTATTTTGCACGTTTTGACATAATTGCAGCTGTACTTATAGTGGTCGTAGAGTTGTACTTCAAAAGTTGTTCACGGTCTCTTTTCATATGTTGAATAATTCTATGACTGTCTATTTCAGATCTGTACTTATAGTCGACAATGGTTAGTCAACGGTGCATATGTTTGAAGCCAATTTTCCCTTCAACTGTATGCATTTGCATTCGTCTGTAACGCAAGCGTCGAACTTTTAAACATATCTTCAAACAAAGCAAAGCCATAGCTATGAACAGTGGAACACAGATTCAATGTTATAGCTATGTTAAAGCATTTTTGTATATATTTTGAAGGAAACAGCATTCCCACTCCCAAAA

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCATTTCAAAGGTTTGCTGTGAGAACATCAAAGCAAATTGAGGATATATCTACCAAAGCTGCCCAGAAGAAGCAAGAACTTGCAGAACAGATGAAAGATCTCTCCAAAAATTTTGAGTCTTTCAAGAACCAATAA

Protein sequence

MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKDLSKNFESFKNQ

Homology

[Close]

BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.0e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match: A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.0e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match: A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAA+KKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. ExPASy TrEMBL
Match: A0A1S3B691 (uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.4e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAV+TSKQIEDISTKAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKN 71
           SKNF+SFKN
Sbjct: 61 FSKNFDSFKN 70

[Close]

BLAST of CmaCh06G002200 vs. NCBI nr
Match: XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 7.9e-26
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAA+KKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. NCBI nr
Match: XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIE+IS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. NCBI nr
Match: XP_023527736.1 (uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60
          MAGGNFMHRVVSYLVNEV+VNSLANSR+FQRFAVRTSKQIEDIS KA+QKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVIVNSLANSRTFQRFAVRTSKQIEDISNKASQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]

BLAST of CmaCh06G002200 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-15
Identity = 38/67 (56.72%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 3  GGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKDLS 62
          GGNF+ RV+SY+ NE +VN LANS +FQRFAVRTSK+IE++S  AA+ ++++A+QM++ +
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFESFK 70
          KN +S K
Sbjct: 64 KNIDSTK 70

The following BLAST results are available for this feature:

BLAST of CmaCh06G002200 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G002200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5H8	7.0e-28	100.00	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]
A0A6J1GCB5	7.0e-28	100.00	uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1F5E7	3.8e-26	94.37	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A6J1IZW4	1.1e-25	92.96	uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182...	[more]
A0A1S3B691	9.4e-25	91.43	uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=...	[more]

BLAST of CmaCh06G002200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949523.1	1.4e-27	100.00	uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar...	[more]
XP_022935686.1	7.9e-26	94.37	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]
XP_022983627.1	2.3e-25	92.96	uncharacterized protein LOC111482182 [Cucurbita maxima]	[more]
XP_038903248.1	2.3e-25	92.96	uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara...	[more]
XP_023527736.1	3.0e-25	91.55	uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh06G002200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	1.8e-15	56.72	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..71
None	No IPR available	PANTHER	PTHR34966	OSJNBA0043L24.15 PROTEIN	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G002200.1	CmaCh06G002200.1	mRNA