Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCAACAAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTCAATCACACAGTTAAATAGTTAGTTCACTTCAATTTGGTGTCTTTTGGTATTTCAGCGGTTACTAATCTAGTATACGTAACGTATGCCTCCTTTTCCACTCCATTAGTGGCTCGGCTTCGTCCTAGAAGTTACAGCTTTCGCCTCTGACGACTTCACTATCGCTCATGACTTGTATATGGATCTCTTGATTTATGTAGTGGTCGACCTGATAGAAGCTAAGCATGGCCAGAAAGAAGCTACTAGTCGCTTCCCGAATGCCTGCCTCTTGACTTATGGTCTAGTCTGATTTCCATTGCCTCCTTCCCTTCCTTGCCGCCAACGGAGAGTAAGCAAGCGACCTTGCTTGCATTCGTCAAAGGGTAGCTTCTGCGCCCTTACTGCCTGCTTCAATTGATGTGAATGAGAGTATCTTCAACTCCTATTTAGTCTTTTTCTTTCTCTCTGTCACTAAAACAAGAAGTTCTGTCTCTGTTTTCTTTTTGGATTCCGAGGATGAGCCGACCGATCCTAACATCATTTATGAGGAGCCAGACGACGAAGTCTCCTCCTCAGATAAAGATGTCTCCGATGTGACTGGCAAGAACCACTTTTTCTATTGTGATTCTTTTTGCGGGTTCGGTCAGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA
mRNA sequence
ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA
Coding sequence (CDS)
ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA
Protein sequence
MSYISGARSVADKQVRIASTKLMELDLKKPFRGENEQTSNDSFLFLVIVEFIIKMDCPYAVNELILMLGLVAREFGNEISLPKALGTCRVIEAKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVGLG
Homology
BLAST of CmaCh04G019780 vs. ExPASy Swiss-Prot
Match:
P08834 (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 SV=1)
HSP 1 Score: 45.1 bits (105), Expect = 7.3e-04
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0
Query: 86 GTCRVIEAKEKCFPSVKSRYRPPMLP 112
G +VIEAKE+CFPSVKSRYRPP P
Sbjct: 42 GFGQVIEAKERCFPSVKSRYRPPHAP 67
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match:
A0A5A7TBN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45541G00050 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0
Query: 21 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFIIKMDCPYAVNELILMLGLVAREFGNEIS 80
KLMELDLKKPFRGENEQTSNDSFLFLVIVEF+IKMDCPYAVNELILMLGLVA EFGNEIS
Sbjct: 35 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFVIKMDCPYAVNELILMLGLVASEFGNEIS 94
Query: 81 LP 83
LP
Sbjct: 95 LP 96
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match:
A0A124SB01 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008925 PE=3 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 53/122 (43.44%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 55 MDCPYAVNELILMLGLVAREFGNEISLPKAL----------------------------- 114
MD PY VNELILMLGLVA +FGNE SLPKAL
Sbjct: 1 MDHPYVVNELILMLGLVASKFGNERSLPKALDYEDDPAHPNIIYEEPDDEASSSDKDVSD 60
Query: 115 GTCRVIE----------------AKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVG 132
T I+ KE+CF SVK RY PPML +SAYR IER++ PE V
Sbjct: 61 ATLPAIKTLSIYIFVFWRVRXGGTKERCFLSVKIRYPPPMLLRSAYRRIERKDPGPEQVX 120
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match:
A0A068BFE4 (Orf116d OS=Batis maritima OX=4436 GN=orf116d PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 92 EAKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVGLG 132
E KE+CF SVKSRYRPPMLP+ AYRGIERE+ PE VGLG
Sbjct: 56 ETKERCFLSVKSRYRPPMLPRPAYRGIEREDRGPEQVGLG 95
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match:
A0A2G2WBB7 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_16570 PE=3 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 6.6e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0
Query: 49 VEFIIKMDCPYAVNELILMLGLVAREFGNEISLPKALG 87
+EF+IKMD PYAVNELILMLGLVA EFGNE SLPKALG
Sbjct: 1 MEFVIKMDRPYAVNELILMLGLVASEFGNERSLPKALG 38
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match:
A0A4D8Y8F6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_047322 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 5.3e-05
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query: 55 MDCPYAVNELILMLGLVAREFGNEISLPKALGTCRVIEAK 95
MD PYAVNELILMLGLVA +FGNE SLPKALG+ + A+
Sbjct: 1 MDRPYAVNELILMLGLVASKFGNERSLPKALGSVPFLPAE 40
BLAST of CmaCh04G019780 vs. NCBI nr
Match:
KAA0040730.1 (hypothetical protein E6C27_scaffold45541G00050 [Cucumis melo var. makuwa])
HSP 1 Score: 122.5 bits (306), Expect = 2.7e-24
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0
Query: 21 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFIIKMDCPYAVNELILMLGLVAREFGNEIS 80
KLMELDLKKPFRGENEQTSNDSFLFLVIVEF+IKMDCPYAVNELILMLGLVA EFGNEIS
Sbjct: 35 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFVIKMDCPYAVNELILMLGLVASEFGNEIS 94
Query: 81 LP 83
LP
Sbjct: 95 LP 96
BLAST of CmaCh04G019780 vs. NCBI nr
Match:
KVH89095.1 (hypothetical protein Ccrd_008925 [Cynara cardunculus var. scolymus])
HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 53/122 (43.44%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 55 MDCPYAVNELILMLGLVAREFGNEISLPKAL----------------------------- 114
MD PY VNELILMLGLVA +FGNE SLPKAL
Sbjct: 1 MDHPYVVNELILMLGLVASKFGNERSLPKALDYEDDPAHPNIIYEEPDDEASSSDKDVSD 60
Query: 115 GTCRVIE----------------AKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVG 132
T I+ KE+CF SVK RY PPML +SAYR IER++ PE V
Sbjct: 61 ATLPAIKTLSIYIFVFWRVRXGGTKERCFLSVKIRYPPPMLLRSAYRRIERKDPGPEQVX 120
BLAST of CmaCh04G019780 vs. NCBI nr
Match:
YP_009045821.1 (orf116d [Batis maritima] >AIC83424.1 orf116d [Batis maritima])
HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 92 EAKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVGLG 132
E KE+CF SVKSRYRPPMLP+ AYRGIERE+ PE VGLG
Sbjct: 56 ETKERCFLSVKSRYRPPMLPRPAYRGIEREDRGPEQVGLG 95
BLAST of CmaCh04G019780 vs. NCBI nr
Match:
PHT42545.1 (hypothetical protein CQW23_16570 [Capsicum baccatum])
HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0
Query: 49 VEFIIKMDCPYAVNELILMLGLVAREFGNEISLPKALG 87
+EF+IKMD PYAVNELILMLGLVA EFGNE SLPKALG
Sbjct: 1 MEFVIKMDRPYAVNELILMLGLVASEFGNERSLPKALG 38
BLAST of CmaCh04G019780 vs. NCBI nr
Match:
KAG6383911.1 (hypothetical protein SASPL_156335 [Salvia splendens] >KAG6384674.1 hypothetical protein SASPL_155528 [Salvia splendens])
HSP 1 Score: 61.2 bits (147), Expect = 7.5e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0
Query: 55 MDCPYAVNELILMLGLVAREFGNEISLPKALGTC----RVIEAKEKCFPSVKSRYRPPML 112
MD PYAVNELILMLGLVA +FGNE SLPKALG+ I+ ++ F S PP+
Sbjct: 1 MDRPYAVNELILMLGLVASKFGNERSLPKALGSVPFLPAEIDVNDRVFKSYSGVIPPPIR 60
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P08834 | 7.3e-04 | 76.92 | NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TBN1 | 1.3e-24 | 96.77 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A124SB01 | 1.9e-10 | 43.44 | Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008... | [more] |
A0A068BFE4 | 5.1e-08 | 77.50 | Orf116d OS=Batis maritima OX=4436 GN=orf116d PE=4 SV=1 | [more] |
A0A2G2WBB7 | 6.6e-08 | 86.84 | Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_16570 PE=3 SV=1 | [more] |
A0A4D8Y8F6 | 5.3e-05 | 72.50 | Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_047322 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAA0040730.1 | 2.7e-24 | 96.77 | hypothetical protein E6C27_scaffold45541G00050 [Cucumis melo var. makuwa] | [more] |
KVH89095.1 | 3.9e-10 | 43.44 | hypothetical protein Ccrd_008925 [Cynara cardunculus var. scolymus] | [more] |
YP_009045821.1 | 1.0e-07 | 77.50 | orf116d [Batis maritima] >AIC83424.1 orf116d [Batis maritima] | [more] |
PHT42545.1 | 1.4e-07 | 86.84 | hypothetical protein CQW23_16570 [Capsicum baccatum] | [more] |
KAG6383911.1 | 7.5e-06 | 55.74 | hypothetical protein SASPL_156335 [Salvia splendens] >KAG6384674.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |