CmaCh04G019780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G019780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionNADH-ubiquinone oxidoreductase chain 1
LocationCma_Chr04: 11544296 .. 11545434 (+)
RNA-Seq ExpressionCmaCh04G019780
SyntenyCmaCh04G019780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCAACAAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTCAATCACACAGTTAAATAGTTAGTTCACTTCAATTTGGTGTCTTTTGGTATTTCAGCGGTTACTAATCTAGTATACGTAACGTATGCCTCCTTTTCCACTCCATTAGTGGCTCGGCTTCGTCCTAGAAGTTACAGCTTTCGCCTCTGACGACTTCACTATCGCTCATGACTTGTATATGGATCTCTTGATTTATGTAGTGGTCGACCTGATAGAAGCTAAGCATGGCCAGAAAGAAGCTACTAGTCGCTTCCCGAATGCCTGCCTCTTGACTTATGGTCTAGTCTGATTTCCATTGCCTCCTTCCCTTCCTTGCCGCCAACGGAGAGTAAGCAAGCGACCTTGCTTGCATTCGTCAAAGGGTAGCTTCTGCGCCCTTACTGCCTGCTTCAATTGATGTGAATGAGAGTATCTTCAACTCCTATTTAGTCTTTTTCTTTCTCTCTGTCACTAAAACAAGAAGTTCTGTCTCTGTTTTCTTTTTGGATTCCGAGGATGAGCCGACCGATCCTAACATCATTTATGAGGAGCCAGACGACGAAGTCTCCTCCTCAGATAAAGATGTCTCCGATGTGACTGGCAAGAACCACTTTTTCTATTGTGATTCTTTTTGCGGGTTCGGTCAGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA

mRNA sequence

ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA

Coding sequence (CDS)

ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA

Protein sequence

MSYISGARSVADKQVRIASTKLMELDLKKPFRGENEQTSNDSFLFLVIVEFIIKMDCPYAVNELILMLGLVAREFGNEISLPKALGTCRVIEAKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVGLG
Homology
BLAST of CmaCh04G019780 vs. ExPASy Swiss-Prot
Match: P08834 (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-04
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0

Query: 86  GTCRVIEAKEKCFPSVKSRYRPPMLP 112
           G  +VIEAKE+CFPSVKSRYRPP  P
Sbjct: 42  GFGQVIEAKERCFPSVKSRYRPPHAP 67

BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A5A7TBN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45541G00050 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 21 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFIIKMDCPYAVNELILMLGLVAREFGNEIS 80
          KLMELDLKKPFRGENEQTSNDSFLFLVIVEF+IKMDCPYAVNELILMLGLVA EFGNEIS
Sbjct: 35 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFVIKMDCPYAVNELILMLGLVASEFGNEIS 94

Query: 81 LP 83
          LP
Sbjct: 95 LP 96

BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A124SB01 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008925 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 53/122 (43.44%), Postives = 59/122 (48.36%), Query Frame = 0

Query: 55  MDCPYAVNELILMLGLVAREFGNEISLPKAL----------------------------- 114
           MD PY VNELILMLGLVA +FGNE SLPKAL                             
Sbjct: 1   MDHPYVVNELILMLGLVASKFGNERSLPKALDYEDDPAHPNIIYEEPDDEASSSDKDVSD 60

Query: 115 GTCRVIE----------------AKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVG 132
            T   I+                 KE+CF SVK RY PPML +SAYR IER++  PE V 
Sbjct: 61  ATLPAIKTLSIYIFVFWRVRXGGTKERCFLSVKIRYPPPMLLRSAYRRIERKDPGPEQVX 120

BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A068BFE4 (Orf116d OS=Batis maritima OX=4436 GN=orf116d PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 92  EAKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVGLG 132
           E KE+CF SVKSRYRPPMLP+ AYRGIERE+  PE VGLG
Sbjct: 56  ETKERCFLSVKSRYRPPMLPRPAYRGIEREDRGPEQVGLG 95

BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A2G2WBB7 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_16570 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.6e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 49 VEFIIKMDCPYAVNELILMLGLVAREFGNEISLPKALG 87
          +EF+IKMD PYAVNELILMLGLVA EFGNE SLPKALG
Sbjct: 1  MEFVIKMDRPYAVNELILMLGLVASEFGNERSLPKALG 38

BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A4D8Y8F6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_047322 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.3e-05
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 55 MDCPYAVNELILMLGLVAREFGNEISLPKALGTCRVIEAK 95
          MD PYAVNELILMLGLVA +FGNE SLPKALG+   + A+
Sbjct: 1  MDRPYAVNELILMLGLVASKFGNERSLPKALGSVPFLPAE 40

BLAST of CmaCh04G019780 vs. NCBI nr
Match: KAA0040730.1 (hypothetical protein E6C27_scaffold45541G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-24
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 21 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFIIKMDCPYAVNELILMLGLVAREFGNEIS 80
          KLMELDLKKPFRGENEQTSNDSFLFLVIVEF+IKMDCPYAVNELILMLGLVA EFGNEIS
Sbjct: 35 KLMELDLKKPFRGENEQTSNDSFLFLVIVEFVIKMDCPYAVNELILMLGLVASEFGNEIS 94

Query: 81 LP 83
          LP
Sbjct: 95 LP 96

BLAST of CmaCh04G019780 vs. NCBI nr
Match: KVH89095.1 (hypothetical protein Ccrd_008925 [Cynara cardunculus var. scolymus])

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 53/122 (43.44%), Postives = 59/122 (48.36%), Query Frame = 0

Query: 55  MDCPYAVNELILMLGLVAREFGNEISLPKAL----------------------------- 114
           MD PY VNELILMLGLVA +FGNE SLPKAL                             
Sbjct: 1   MDHPYVVNELILMLGLVASKFGNERSLPKALDYEDDPAHPNIIYEEPDDEASSSDKDVSD 60

Query: 115 GTCRVIE----------------AKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVG 132
            T   I+                 KE+CF SVK RY PPML +SAYR IER++  PE V 
Sbjct: 61  ATLPAIKTLSIYIFVFWRVRXGGTKERCFLSVKIRYPPPMLLRSAYRRIERKDPGPEQVX 120

BLAST of CmaCh04G019780 vs. NCBI nr
Match: YP_009045821.1 (orf116d [Batis maritima] >AIC83424.1 orf116d [Batis maritima])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 92  EAKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVGLG 132
           E KE+CF SVKSRYRPPMLP+ AYRGIERE+  PE VGLG
Sbjct: 56  ETKERCFLSVKSRYRPPMLPRPAYRGIEREDRGPEQVGLG 95

BLAST of CmaCh04G019780 vs. NCBI nr
Match: PHT42545.1 (hypothetical protein CQW23_16570 [Capsicum baccatum])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 49 VEFIIKMDCPYAVNELILMLGLVAREFGNEISLPKALG 87
          +EF+IKMD PYAVNELILMLGLVA EFGNE SLPKALG
Sbjct: 1  MEFVIKMDRPYAVNELILMLGLVASEFGNERSLPKALG 38

BLAST of CmaCh04G019780 vs. NCBI nr
Match: KAG6383911.1 (hypothetical protein SASPL_156335 [Salvia splendens] >KAG6384674.1 hypothetical protein SASPL_155528 [Salvia splendens])

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 55  MDCPYAVNELILMLGLVAREFGNEISLPKALGTC----RVIEAKEKCFPSVKSRYRPPML 112
           MD PYAVNELILMLGLVA +FGNE SLPKALG+       I+  ++ F S      PP+ 
Sbjct: 1   MDRPYAVNELILMLGLVASKFGNERSLPKALGSVPFLPAEIDVNDRVFKSYSGVIPPPIR 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P088347.3e-0476.92NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 ... [more]
Match NameE-valueIdentityDescription
A0A5A7TBN11.3e-2496.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A124SB011.9e-1043.44Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008... [more]
A0A068BFE45.1e-0877.50Orf116d OS=Batis maritima OX=4436 GN=orf116d PE=4 SV=1[more]
A0A2G2WBB76.6e-0886.84Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_16570 PE=3 SV=1[more]
A0A4D8Y8F65.3e-0572.50Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_047322 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0040730.12.7e-2496.77hypothetical protein E6C27_scaffold45541G00050 [Cucumis melo var. makuwa][more]
KVH89095.13.9e-1043.44hypothetical protein Ccrd_008925 [Cynara cardunculus var. scolymus][more]
YP_009045821.11.0e-0777.50orf116d [Batis maritima] >AIC83424.1 orf116d [Batis maritima][more]
PHT42545.11.4e-0786.84hypothetical protein CQW23_16570 [Capsicum baccatum][more]
KAG6383911.17.5e-0655.74hypothetical protein SASPL_156335 [Salvia splendens] >KAG6384674.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019780.1CmaCh04G019780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005886 plasma membrane