CmaCh04G019780 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCAACAAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTCAATCACACAGTTAAATAGTTAGTTCACTTCAATTTGGTGTCTTTTGGTATTTCAGCGGTTACTAATCTAGTATACGTAACGTATGCCTCCTTTTCCACTCCATTAGTGGCTCGGCTTCGTCCTAGAAGTTACAGCTTTCGCCTCTGACGACTTCACTATCGCTCATGACTTGTATATGGATCTCTTGATTTATGTAGTGGTCGACCTGATAGAAGCTAAGCATGGCCAGAAAGAAGCTACTAGTCGCTTCCCGAATGCCTGCCTCTTGACTTATGGTCTAGTCTGATTTCCATTGCCTCCTTCCCTTCCTTGCCGCCAACGGAGAGTAAGCAAGCGACCTTGCTTGCATTCGTCAAAGGGTAGCTTCTGCGCCCTTACTGCCTGCTTCAATTGATGTGAATGAGAGTATCTTCAACTCCTATTTAGTCTTTTTCTTTCTCTCTGTCACTAAAACAAGAAGTTCTGTCTCTGTTTTCTTTTTGGATTCCGAGGATGAGCCGACCGATCCTAACATCATTTATGAGGAGCCAGACGACGAAGTCTCCTCCTCAGATAAAGATGTCTCCGATGTGACTGGCAAGAACCACTTTTTCTATTGTGATTCTTTTTGCGGGTTCGGTCAGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA ATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGAGAATTCGGAAATGAAATCAGTTTACCGAAAGCCCTTGGTACTTGTCGGGTAATAGAAGCTAAGGAGAAATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCTGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAA MSYISGARSVADKQVRIASTKLMELDLKKPFRGENEQTSNDSFLFLVIVEFIIKMDCPYAVNELILMLGLVAREFGNEISLPKALGTCRVIEAKEKCFPSVKSRYRPPMLPKSAYRGIEREELEPELVGLG Homology
BLAST of CmaCh04G019780 vs. ExPASy Swiss-Prot
Match: P08834 (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 7.3e-04 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A5A7TBN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45541G00050 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24 Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A124SB01 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008925 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10 Identity = 53/122 (43.44%), Postives = 59/122 (48.36%), Query Frame = 0
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A068BFE4 (Orf116d OS=Batis maritima OX=4436 GN=orf116d PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08 Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A2G2WBB7 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_16570 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 6.6e-08 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0
BLAST of CmaCh04G019780 vs. ExPASy TrEMBL
Match: A0A4D8Y8F6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_047322 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 5.3e-05 Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0
BLAST of CmaCh04G019780 vs. NCBI nr
Match: KAA0040730.1 (hypothetical protein E6C27_scaffold45541G00050 [Cucumis melo var. makuwa]) HSP 1 Score: 122.5 bits (306), Expect = 2.7e-24 Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0
BLAST of CmaCh04G019780 vs. NCBI nr
Match: KVH89095.1 (hypothetical protein Ccrd_008925 [Cynara cardunculus var. scolymus]) HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10 Identity = 53/122 (43.44%), Postives = 59/122 (48.36%), Query Frame = 0
BLAST of CmaCh04G019780 vs. NCBI nr
Match: YP_009045821.1 (orf116d [Batis maritima] >AIC83424.1 orf116d [Batis maritima]) HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07 Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
BLAST of CmaCh04G019780 vs. NCBI nr
Match: PHT42545.1 (hypothetical protein CQW23_16570 [Capsicum baccatum]) HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0
BLAST of CmaCh04G019780 vs. NCBI nr
Match: KAG6383911.1 (hypothetical protein SASPL_156335 [Salvia splendens] >KAG6384674.1 hypothetical protein SASPL_155528 [Salvia splendens]) HSP 1 Score: 61.2 bits (147), Expect = 7.5e-06 Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|