CmaCh04G017620 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G017620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCopper amine oxidase 1-like
LocationCma_Chr04: 8860213 .. 8861234 (+)
RNA-Seq ExpressionCmaCh04G017620
SyntenyCmaCh04G017620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTCTAAATTTATACCTATTTAATTAATCTAGAAAATAACTATCTTTTCCTTGCTACCCCCACAATTATCTCTCACAAATGCGGTAGAAATTCCTATTGTCAAAAAAAGAGCAAAAGTGAATCCCAGCAAGAAGAACATCAAATTATGATCATTCACATTATATGGTGACACTAATACATAAAAATTTAATATAATTTCCAATCTAGTTATAAACATCATACATAGGAAATCCTACCCAATATTAAGGGAAAAGTTCAGATCAAAATAATCTTTTTAAAAAGTCCGAGTACTCTGTTGTTTCGCCTGACCAGACAATTCAGAAGAATCAATCAAAACAACGTTCAAGGAAAGGCTTCTTATTGTCCTACGTTTAATAGTTCAATCAACCATATATTCCTATCGCATAGTCTAAGATTCAATCATGGAAAGGCTTGAACATTGCATCAGATAATCGTATGTGAACCCATAAACGCTTAAATTATATCAAAAAGGTCTCCAGTAAGTTCAAACAGACAAAAATGAAAATTCACCAAGAACAAAAATCCCTATAACGAAGAGAAACTCAAACCTAAGCTGTAAGAACCACCGCGCCACCGGCCTCCTTAATCTTCTTCTCGGCGATCTTGGATACAAGCTTGGCCTTCACCACAATAGGCTGATTCTCCGGCAACACACCCTTGCCCAAAACCTTAAAATAACCGAACTGCGTGACATCGACCAATGGAACGTTGTCTTTGGAGGCCTTATCCTTCACTTCTTGAGGGATCAAGGACCAGATCTTGTCAACGTTGACAATCGGGCAATAGAACTTGTTGCGAAGCTTGTGGAAGTAACGCATACCGACTTTACCGAAATAACCAGGGTGATACTTATCGAAGAGAATACGATGGTGGTGCATACCTCCGGCGTTTCCCCGACCTCCAGGATGCTTTCGGTGCTTGCCGATTCTACCGTGACCGGCGCTCACATGTCCTCTCTTCTTCCTGTTCTTCTTGAATCGAGTCGTCATGGCTGA

mRNA sequence

ATGGTTCAAACAGACAAAAATGAAAATTCACCAAGAACAAAAATCCCTATAACGAAGAGAAACTCAAACCTAAGCTGTAAGAACCACCGCGCCACCGGCCTCCTTAATCTTCTTCTCGGCGATCTTGGATACAAGCTTGGCCTTCACCACAATAGGCTGATTCTCCGGCAACACACCCTTGCCCAAAACCTTAAAATAACCGAACTGCGTGACATCGACCAATGGAACGTTGTCTTTGGAGGCCTTATCCTTCACTTCTTGAGGGATCAAGGACCAGATCTTGTCAACGTTGACAATCGGGCAATAGAACTTGTTGCGAAGCTTGTGGAAGTAACGCATACCGACTTTACCGAAATAACCAGGGTGATACTTATCGAAGAGAATACGATGGTGGTGCATACCTCCGGCGTTTCCCCGACCTCCAGGATGCTTTCGGTGCTTGCCGATTCTACCGTGACCGGCGCTCACATGTCCTCTCTTCTTCCTGTTCTTCTTGAATCGAGTCGTCATGGCTGA

Coding sequence (CDS)

ATGGTTCAAACAGACAAAAATGAAAATTCACCAAGAACAAAAATCCCTATAACGAAGAGAAACTCAAACCTAAGCTGTAAGAACCACCGCGCCACCGGCCTCCTTAATCTTCTTCTCGGCGATCTTGGATACAAGCTTGGCCTTCACCACAATAGGCTGATTCTCCGGCAACACACCCTTGCCCAAAACCTTAAAATAACCGAACTGCGTGACATCGACCAATGGAACGTTGTCTTTGGAGGCCTTATCCTTCACTTCTTGAGGGATCAAGGACCAGATCTTGTCAACGTTGACAATCGGGCAATAGAACTTGTTGCGAAGCTTGTGGAAGTAACGCATACCGACTTTACCGAAATAACCAGGGTGATACTTATCGAAGAGAATACGATGGTGGTGCATACCTCCGGCGTTTCCCCGACCTCCAGGATGCTTTCGGTGCTTGCCGATTCTACCGTGACCGGCGCTCACATGTCCTCTCTTCTTCCTGTTCTTCTTGAATCGAGTCGTCATGGCTGA

Protein sequence

MVQTDKNENSPRTKIPITKRNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDIDQWNVVFGGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVSPTSRMLSVLADSTVTGAHMSSLLPVLLESSRHG
Homology
[Close]
BLAST of CmaCh04G017620 vs. ExPASy Swiss-Prot
Match: P53143 (Putative uncharacterized protein YGL102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YGL102C PE=5 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 59  TLAQNLKITELRDIDQWNVV----FGGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHT 118
           TL Q+L +T  + ++ W+      F  L+     DQ P  V V +   E+   LVEV+HT
Sbjct: 37  TLTQDLTVTGCQSVNNWSSFLRSRFQVLVSLVFWDQCPQFVQVQDWLPEMSLLLVEVSHT 96

Query: 119 DFTEITRVILIEENTMVVHTSGVSPTSRMLSVLADSTVTG 155
           + TEIT ++ I  N++V+ T+G + T+ +LSVL D+T TG
Sbjct: 97  NLTEITWMVFIHVNSVVMLTTGHTSTTGVLSVLTDTTFTG 136

[Close]
BLAST of CmaCh04G017620 vs. ExPASy TrEMBL
Match: W9RN37 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027707 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.0e-40
Identity = 89/152 (58.55%), Postives = 123/152 (80.92%), Query Frame = 0 

Query: 19  KRNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDIDQWNVV 78
           ++ S+L  ++  A GLLNLLLGDLG +LGL  +RLILRQ + AQNL+++EL DID+ +VV
Sbjct: 30  EKTSDLGGEDDGAAGLLNLLLGDLGDELGLDDDRLILRQDSFAQNLEVSELSDIDERDVV 89

Query: 79  FGGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVS 138
            GGL+L  LR+ GP+LV+VD+RA+E V +LVE+ HTD  E+ RVIL+EE+++VVHT+GV+
Sbjct: 90  LGGLVLDLLRNHGPELVDVDDRAVEFVTELVEIPHTDLAEVARVILVEEDSVVVHTTGVT 149

Query: 139 PTSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
            T+ +L VLADS++ GAH+ +LLPVLLES RH
Sbjct: 150 ATTGVLPVLADSSMAGAHVPALLPVLLESGRH 181

[Close]
BLAST of CmaCh04G017620 vs. ExPASy TrEMBL
Match: A0A7N0U1I4 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37
Identity = 90/166 (54.22%), Postives = 121/166 (72.89%), Query Frame = 0 

Query: 5   DKNENSPRTKIPITKRNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNL 64
           ++++NS   K   T     LS +N+ A  LL+LLL  LG KLGLHHNRL LRQH L Q+L
Sbjct: 24  NQSDNSKTLK---TGDEQTLSGENNGAASLLDLLLRGLGNKLGLHHNRLRLRQHPLPQHL 83

Query: 65  KITELRDIDQWNVVFGGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVIL 124
           +++ELR +D+  V  G L+LH LR Q P LV+VD+RA+ELV +LVEV HTD TE+T ++L
Sbjct: 84  EVSELRHVDERYVALGRLVLHLLRHQRPQLVHVDDRAVELVPQLVEVPHTDLTEVTWMVL 143

Query: 125 IEENTMVVHTSGVSPTSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
           +E+N +VVH SGV+PTS ML VL D+++ G H++SLLPVL +  RH
Sbjct: 144 VEQNPVVVHASGVTPTSGMLPVLPDTSMPGTHVASLLPVLAKPRRH 186

[Close]
BLAST of CmaCh04G017620 vs. ExPASy TrEMBL
Match: A0A5D2GZF1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G182500v1 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.6e-30
Identity = 76/151 (50.33%), Postives = 109/151 (72.19%), Query Frame = 0 

Query: 20  RNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDIDQWNVVF 79
           +N NLS +++  T LLN L   L ++L L  +RLILRQ+T +++ K+ EL  +D  + + 
Sbjct: 9   KNPNLSGEHNSTTSLLNFLFSGLRHQLSLDDHRLILRQNTFSEDFKVPELCHVDHRSGIL 68

Query: 80  GGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVSP 139
           GGL  H LRD+ P+LV+VD+ A+ELV + VEV HT+ TEITR++L+EE+ +VVH S V+ 
Sbjct: 69  GGLGFHVLRDKRPELVDVDDGAMELVTEPVEVPHTNLTEITRMVLVEEDPVVVHASSVTA 128

Query: 140 TSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
           T  +L VL D+TVTGAHM++LL VLLE+  H
Sbjct: 129 TPGVLPVLPDTTVTGAHMAALLAVLLEAGCH 159

[Close]
BLAST of CmaCh04G017620 vs. ExPASy TrEMBL
Match: A0A7N0T5V7 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.7e-30
Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = 0 

Query: 14  KIPITKRNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDID 73
           KI        L  K+  A  LLNLLL   G +  LHHN L  R+H L Q+L++ ELRDID
Sbjct: 13  KIRNEDNTKTLGSKHDSAASLLNLLLSSFGNQFRLHHNGLGCRKHPLPQDLEVPELRDID 72

Query: 74  QWNVVFGGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVH 133
           Q  V+  GL+LH LR + P LV+VD+RA+ELVAKL+EV H D  E++ ++L+EE+ +VVH
Sbjct: 73  QRKVIRRGLVLHLLRHERPQLVDVDDRAVELVAKLMEVAHADLAEVSGMVLVEEDAVVVH 132

Query: 134 TSGVSPTSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
            S V+  S ML+VLAD+ V GA +++LL VL ++  H
Sbjct: 133 ASSVTAPSGMLTVLADTAVAGADVAALLTVLPKAGGH 169

[Close]
BLAST of CmaCh04G017620 vs. ExPASy TrEMBL
Match: A0A498HES5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037293 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.9e-24
Identity = 68/130 (52.31%), Postives = 94/130 (72.31%), Query Frame = 0 

Query: 45  KLGLHHNRLILRQHTLAQNLKITELRDIDQWNVVF----GGLILHFLRDQGPDLVNVDNR 104
           +LG HH RL  RQH L Q+L++ +L D++Q  +      GGL+LH L  + P LV VD+R
Sbjct: 2   QLGFHHQRL-RRQHALPQHLEVPKLSDVEQRRLASSLGGGGLVLHLLGYKRPQLVEVDDR 61

Query: 105 AIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVSPTSRMLSVLADSTVTGAHMSSL 164
           A+ELVA+ VEV HTDFTEI  ++L+EE+ +VVH SGV+ T+ +L+VLAD+ V GA +++L
Sbjct: 62  AMELVAQPVEVPHTDFTEIPWMVLVEEDPVVVHASGVTATAGVLAVLADTPVAGADVAAL 121

Query: 165 LPVLLESSRH 171
           L VLLE  RH
Sbjct: 122 LAVLLEPRRH 130

[Close]
BLAST of CmaCh04G017620 vs. NCBI nr
Match: EXB82531.1 (hypothetical protein L484_027707 [Morus notabilis])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-39
Identity = 89/152 (58.55%), Postives = 123/152 (80.92%), Query Frame = 0 

Query: 19  KRNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDIDQWNVV 78
           ++ S+L  ++  A GLLNLLLGDLG +LGL  +RLILRQ + AQNL+++EL DID+ +VV
Sbjct: 30  EKTSDLGGEDDGAAGLLNLLLGDLGDELGLDDDRLILRQDSFAQNLEVSELSDIDERDVV 89

Query: 79  FGGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVS 138
            GGL+L  LR+ GP+LV+VD+RA+E V +LVE+ HTD  E+ RVIL+EE+++VVHT+GV+
Sbjct: 90  LGGLVLDLLRNHGPELVDVDDRAVEFVTELVEIPHTDLAEVARVILVEEDSVVVHTTGVT 149

Query: 139 PTSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
            T+ +L VLADS++ GAH+ +LLPVLLES RH
Sbjct: 150 ATTGVLPVLADSSMAGAHVPALLPVLLESGRH 181

[Close]
BLAST of CmaCh04G017620 vs. NCBI nr
Match: KAG4163103.1 (hypothetical protein ERO13_D01G150701v2 [Gossypium hirsutum])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 79/151 (52.32%), Postives = 112/151 (74.17%), Query Frame = 0 

Query: 20  RNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDIDQWNVVF 79
           R +NL  +++  T LLNLL   LG++L L+H+RL+L Q+TL+++LK+ EL  +D    V 
Sbjct: 11  RKANLGGEHNSTTSLLNLLFSCLGHQLSLNHDRLVLGQNTLSKDLKVPELGHVDHRRSVL 70

Query: 80  GGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVSP 139
            G  LH L D+ P+LV+VDN A++LVA+LVEV HTDFTEI RVI ++E+ +VVH SGVS 
Sbjct: 71  VGFCLHVLWDERPELVDVDNGAVKLVAELVEVPHTDFTEIPRVIFVKEDPVVVHASGVSA 130

Query: 140 TSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
           TSRML +L +++VT A +++LL VLLE+  H
Sbjct: 131 TSRMLPMLTNTSVTSADVAALLAVLLEAGCH 161

[Close]
BLAST of CmaCh04G017620 vs. NCBI nr
Match: KAG8500153.1 (hypothetical protein CXB51_004461 [Gossypium anomalum])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-30
Identity = 76/151 (50.33%), Postives = 110/151 (72.85%), Query Frame = 0 

Query: 20  RNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDIDQWNVVF 79
           +N NLS +++  T LLN LLG L ++L L  +RLILRQ+T +++ K+ EL  +D  + + 
Sbjct: 9   KNPNLSGEHNSTTSLLNFLLGGLRHQLSLDDHRLILRQNTFSEDFKVPELCHVDHRSRIL 68

Query: 80  GGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVSP 139
           GGL  H LRD+ P+LV+VD+ A+ELV + VEV HT+ TEITR++ +EE+ +V+H S V+ 
Sbjct: 69  GGLGFHVLRDKRPELVDVDDGAMELVTEPVEVPHTNLTEITRMVFVEEDPVVMHASSVTA 128

Query: 140 TSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
           T  +L VL D+TVTGAHM++LL VLLE+  H
Sbjct: 129 TPGVLPVLPDTTVTGAHMAALLAVLLEAGCH 159

[Close]
BLAST of CmaCh04G017620 vs. NCBI nr
Match: TYH23088.1 (hypothetical protein ES288_A04G182500v1 [Gossypium darwinii])

HSP 1 Score: 141.4 bits (355), Expect = 7.5e-30
Identity = 76/151 (50.33%), Postives = 109/151 (72.19%), Query Frame = 0 

Query: 20  RNSNLSCKNHRATGLLNLLLGDLGYKLGLHHNRLILRQHTLAQNLKITELRDIDQWNVVF 79
           +N NLS +++  T LLN L   L ++L L  +RLILRQ+T +++ K+ EL  +D  + + 
Sbjct: 9   KNPNLSGEHNSTTSLLNFLFSGLRHQLSLDDHRLILRQNTFSEDFKVPELCHVDHRSGIL 68

Query: 80  GGLILHFLRDQGPDLVNVDNRAIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVSP 139
           GGL  H LRD+ P+LV+VD+ A+ELV + VEV HT+ TEITR++L+EE+ +VVH S V+ 
Sbjct: 69  GGLGFHVLRDKRPELVDVDDGAMELVTEPVEVPHTNLTEITRMVLVEEDPVVVHASSVTA 128

Query: 140 TSRMLSVLADSTVTGAHMSSLLPVLLESSRH 171
           T  +L VL D+TVTGAHM++LL VLLE+  H
Sbjct: 129 TPGVLPVLPDTTVTGAHMAALLAVLLEAGCH 159

[Close]
BLAST of CmaCh04G017620 vs. NCBI nr
Match: RXH69509.1 (hypothetical protein DVH24_037293 [Malus domestica])

HSP 1 Score: 121.3 bits (303), Expect = 8.0e-24
Identity = 68/130 (52.31%), Postives = 94/130 (72.31%), Query Frame = 0 

Query: 45  KLGLHHNRLILRQHTLAQNLKITELRDIDQWNVVF----GGLILHFLRDQGPDLVNVDNR 104
           +LG HH RL  RQH L Q+L++ +L D++Q  +      GGL+LH L  + P LV VD+R
Sbjct: 2   QLGFHHQRL-RRQHALPQHLEVPKLSDVEQRRLASSLGGGGLVLHLLGYKRPQLVEVDDR 61

Query: 105 AIELVAKLVEVTHTDFTEITRVILIEENTMVVHTSGVSPTSRMLSVLADSTVTGAHMSSL 164
           A+ELVA+ VEV HTDFTEI  ++L+EE+ +VVH SGV+ T+ +L+VLAD+ V GA +++L
Sbjct: 62  AMELVAQPVEVPHTDFTEIPWMVLVEEDPVVVHASGVTATAGVLAVLADTPVAGADVAAL 121

Query: 165 LPVLLESSRH 171
           L VLLE  RH
Sbjct: 122 LAVLLEPRRH 130

The following BLAST results are available for this feature:
BLAST of CmaCh04G017620 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P531437.5e-0938.00Putative uncharacterized protein YGL102C OS=Saccharomyces cerevisiae (strain ATC... [more]
BLAST of CmaCh04G017620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W9RN375.0e-4058.55Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027707 PE=4 SV=1[more]
A0A7N0U1I44.0e-3754.22Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A5D2GZF13.6e-3050.33Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G182500v1 PE=... [more]
A0A7N0T5V74.7e-3049.04Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A498HES53.9e-2452.31Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037293 PE=3 SV=1[more]
BLAST of CmaCh04G017620 vs. NCBI nr
Match NameE-valueIdentityDescription
EXB82531.11.0e-3958.55hypothetical protein L484_027707 [Morus notabilis][more]
KAG4163103.11.8e-3152.32hypothetical protein ERO13_D01G150701v2 [Gossypium hirsutum][more]
KAG8500153.13.3e-3050.33hypothetical protein CXB51_004461 [Gossypium anomalum][more]
TYH23088.17.5e-3050.33hypothetical protein ES288_A04G182500v1 [Gossypium darwinii][more]
RXH69509.18.0e-2452.31hypothetical protein DVH24_037293 [Malus domestica][more]
BLAST of CmaCh04G017620 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G017620.1CmaCh04G017620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0022804 active transmembrane transporter activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding