CmaCh04G014830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G014830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Rad60-SLD domain-containing protein
Location	Cma_Chr04: 7547208 .. 7549672 (-)
RNA-Seq Expression	CmaCh04G014830
Synteny	CmaCh04G014830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGACGAATATTGATCGGGGAAGAAGCGGAAGAGTTTAGATTTCGAGGCCTTTGACAATGGCAAGTCTCTTTCACTCTTTAATTTCATGGGCTCGGACGCTTTTCTGTATCATCTTTATTTGTGGTTTCCCCTCCTCTCTCACTTGTCATTTCTTACCTTGAGTTCTTGATTTCAGGCGGATTATGCTGAAGAATTTGAGCCTTTGTTCAATTACAGCCGCGTTCATCCTCGCTCCGTTGATTGTCTCGATGGTAATAGTTCTCAAGCATGGATGATGTTGGAATTTAACGAAAGTCGGAAATTTTCTATAATTTATAATTCTCGCTTGAGCAAGAATTGTCGAAATTGAGTTTCCTTGTCCTTGCAATTTTGGAAACCGATGGTGATTTTGTGCTTTACTTTCTCCTGTTTGGACTAAAAACATCAGAGGAAGATTCAGACGCGTGCATGTCTCCGGAACCTTTTTCAAAGCGATCAAGGATTTTAAATCCGGCGGTATATTATTCCGTTCGTGTAGTGAAATAGTAGATTTTCTGTCTGCACAATGCTTAAAATTAATGTTCGTTGAAACTGTCAGTGAAAGTAGCCTAAAATGATCGTTCCCTTTCAATCAATATTTAGGTTACGAGTTTGGTGGATGGTAACCCAAAAGAGAAACAAGTGGAAATTGAAGACGAAGAGGAAGATTGGCTGCCTCCTCCACCAAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTATTCACACTTAGTGGTATGCATCTATTGCTTGGTTGATCCATTGATATAATAAAACGGAACTCTTATTCTTTATGTGCGTAAGCTGCTATGGCATGTGTCTCTTCCTGTCCTGATAGGTTAATGAAGCTAGAGTTGGCCTCAGTTACACTATCTGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAAAATGGATGTTGGAAACACGCCCCAGGATCCCCTGGAGCCTGCTTTGGATGACCAAATTCCAATTGCTTCTAAAGAGAGAGCGAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAGGAGCTCAAACAGTTTCGCATTTTCATGGTATGTTCTTATAGTGCAACCATCCTTTTTTGTCAACATATCTCATTGTTTACGATCACTGTTTTTGTTATACGTGCTAGATGCCATTTATTTGCCCTATAATCTTTCATTAGTAAGCATGTTTAGAATAGTATGTAGGGAAATGAATAAATTTTGTGAGTTTGAGTTGAAAAATAAGAGAGAGAACAAATTAGGTATAGACTATCATAGCAAATCTTGAAACATTGATTAATGAAAAAGGGTGTTTTGTGAATAATTGTAATTCTTCCAATTGATCGTTAAAAGGCAGAACAAAACAAACTTAAACTTTCTCCTTTAAATTCCTAACTTCGCAGAGGTTGTCTCTTTAGTATCTTAGACAAAAAAGTTTGGTTAAGGTCTTTTGTTACTTTCTGTTTTAGCCTAAGCCCATCGTGAGTAGGTAATGTCCGCTTCAGCCCGTTACGTATCATGTCAGTCTCACAGTTTTAAAATGTGTCTACTAGGAAGAGGTTTCCACACTTTTATAAGGAATGATTCGTTCTCCTCTCCAACTGATGTGGAATCTCACAATCCACCCTCTTGAGGGTTTTAAAACGTGTCTGCTAGGTTGAGGTTTCCACACTCTTATAAGAAATGGTTCGTTTCCCTTTTCAACCCATATGATATCTTACACTTTCTTTTAGCAAACGTGATTAGCCACATTTACCCTTCAATTTGATTTTCTTGTACTTCCCTTCCACATTATGATGGCCCTAACTTCTCTATTGTTATATGGTGATCATTAGATTTGAACATAGATGCTGAATGTTACTTTTGTTACATTAGTTTCTGTGTACAGTTTCTGCGATTTTGAATGTGCTTGTTTTAGAACAATGATGGGTCTTTCTATGATTCATCCACACTTAGATTATGCTGAAAGTACTATAGATCTCCAATGGTGATGATACTTCTGATGTTATTTGATTGAATTACTTCCTGATCATAGTACAAAATATAATGCACCATGCCCTGTTGGGTTTTTCTTGCCCCTTTCTTATCTTCTTATTTTCTGTCTTCATGTATTGCATACATTACCACGTATGATTATGACACTTCTGGAAGTGTTCCCAAACATACTCTAATGTGGTTTCCAATTTGAATGTTTTTACAGGATGACAAGTTTGAGCGTCTTTTTAAAATGTACGCAGAGAAGCGTAAAATCGATCCCAAGAGTTTGGTTTTCATTTTCGATGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGACATGATAGATGTGAACATTAGGCCGAGTTGAGTAACGTGTCTTTTGAGTTTATATTTGGTGAATTAAAATCACCAGTTTTGGGGATGGGGGA

mRNA sequence

CCGACGAATATTGATCGGGGAAGAAGCGGAAGAGTTTAGATTTCGAGGCCTTTGACAATGGCGGATTATGCTGAAGAATTTGAGCCTTTGTTCAATTACAGCCGCGTTCATCCTCGCTCCGTTGATTGTCTCGATGAGGAAGATTCAGACGCGTGCATGTCTCCGGAACCTTTTTCAAAGCGATCAAGGATTTTAAATCCGGCGGTTACGAGTTTGGTGGATGGTAACCCAAAAGAGAAACAAGTGGAAATTGAAGACGAAGAGGAAGATTGGCTGCCTCCTCCACCAAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTTAATGAAGCTAGAGTTGGCCTCAGTTACACTATCTGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAAAATGGATGTTGGAAACACGCCCCAGGATCCCCTGGAGCCTGCTTTGGATGACCAAATTCCAATTGCTTCTAAAGAGAGAGCGAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAGGAGCTCAAACAGTTTCGCATTTTCATGGATGACAAGTTTGAGCGTCTTTTTAAAATGTACGCAGAGAAGCGTAAAATCGATCCCAAGAGTTTGGTTTTCATTTTCGATGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGACATGATAGATGTGAACATTAGGCCGAGTTGAGTAACGTGTCTTTTGAGTTTATATTTGGTGAATTAAAATCACCAGTTTTGGGGATGGGGGA

Coding sequence (CDS)

ATGGCGGATTATGCTGAAGAATTTGAGCCTTTGTTCAATTACAGCCGCGTTCATCCTCGCTCCGTTGATTGTCTCGATGAGGAAGATTCAGACGCGTGCATGTCTCCGGAACCTTTTTCAAAGCGATCAAGGATTTTAAATCCGGCGGTTACGAGTTTGGTGGATGGTAACCCAAAAGAGAAACAAGTGGAAATTGAAGACGAAGAGGAAGATTGGCTGCCTCCTCCACCAAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTTAATGAAGCTAGAGTTGGCCTCAGTTACACTATCTGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAAAATGGATGTTGGAAACACGCCCCAGGATCCCCTGGAGCCTGCTTTGGATGACCAAATTCCAATTGCTTCTAAAGAGAGAGCGAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAGGAGCTCAAACAGTTTCGCATTTTCATGGATGACAAGTTTGAGCGTCTTTTTAAAATGTACGCAGAGAAGCGTAAAATCGATCCCAAGAGTTTGGTTTTCATTTTCGATGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGACATGATAGATGTGAACATTAGGCCGAGTTGA

Protein sequence

MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKEKQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEESAKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS

Homology

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BLAST of CmaCh04G014830 vs. ExPASy Swiss-Prot
Match: P55853 (Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-05
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 151 IVISVRDSDKEELKQFRIFMDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVGPDDTPVGL 210
           I I V   D  E+  FR+       +L K YA++  +   SL F+FDG ++  DDTP  L
Sbjct: 15  IKIKVVGQDSNEV-HFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTL 74

Query: 211 GMEDDDMIDV 221
            MEDDD+I+V
Sbjct: 75  EMEDDDVIEV 83

[Close]

BLAST of CmaCh04G014830 vs. ExPASy TrEMBL
Match: A0A6J1JEF8 (uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.6e-121
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of CmaCh04G014830 vs. ExPASy TrEMBL
Match: A0A6J1H158 (uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC111458628 PE=3 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.2e-113
Identity = 214/225 (95.11%), Postives = 218/225 (96.89%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MADYAEEFEPLF+YSRV PRSVDCLD+EDSDACMSPEPFSKRSRILNPAVTSLVDG  K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGIRKD 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVALSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFR+FMDDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLFMDDKFERLFKM 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YAEKRKIDPKSLVFIFDGDKV PDDTP GLGMEDDDMIDVNIR S
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVSPDDTPTGLGMEDDDMIDVNIRSS 225

[Close]

BLAST of CmaCh04G014830 vs. ExPASy TrEMBL
Match: A0A0A0KWH7 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 8.0e-94
Identity = 182/225 (80.89%), Postives = 201/225 (89.33%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MAD AEEFEPLF+YSRV P SV CLD+EDSDA  SP PF+KR++I+NPA TS V+GNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIED+EEDWLPPPPKV VDA+N   EDSTLKELRL K ELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AK+DVGNT  DPLEP LD Q P+ASKERAKIVISVRDSDKEELKQ+R+F+DDKFERLFK+
Sbjct: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFERLFKL 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YA+K KIDPKSLVF+FDGDKVGPDDTP GLGMEDDDMI+VNI+ S
Sbjct: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CmaCh04G014830 vs. ExPASy TrEMBL
Match: A0A5A7SVU4 (Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001350 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 175/225 (77.78%), Postives = 195/225 (86.67%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MAD AEEFEPLF+YSRV P SV CLD+EDSDA  SP PF+KR++I N A TS V+GNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIED EEDWLPPPPKV VD  N  GEDSTLKELRL K ELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AK+DVGNT +D LEP LD Q P+ SKERAKIVISVRDSDKEELKQ+R+F+DD FERLFK+
Sbjct: 121 AKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKI 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YA+K KIDP+SLVF+FDGDK+GP+DTP GLGMEDDDMI+VNI+ S
Sbjct: 181 YADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CmaCh04G014830 vs. ExPASy TrEMBL
Match: A0A1S3BF31 (uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489317 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 175/225 (77.78%), Postives = 195/225 (86.67%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MAD AEEFEPLF+YSRV P SV CLD+EDSDA  SP PF+KR++I N A TS V+GNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIED EEDWLPPPPKV VD  N  GEDSTLKELRL K ELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AK+DVGNT +D LEP LD Q P+ SKERAKIVISVRDSDKEELKQ+R+F+DD FERLFK+
Sbjct: 121 AKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKI 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YA+K KIDP+SLVF+FDGDK+GP+DTP GLGMEDDDMI+VNI+ S
Sbjct: 181 YADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of CmaCh04G014830 vs. NCBI nr
Match: XP_022985708.1 (uncharacterized protein LOC111483658 [Cucurbita maxima])

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-120
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of CmaCh04G014830 vs. NCBI nr
Match: XP_023553495.1 (uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 422.5 bits (1085), Expect = 2.2e-114
Identity = 214/225 (95.11%), Postives = 219/225 (97.33%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MADYAEEFEPLF+YSRV PRSVDCLD+EDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEI DEEEDWLPPPPKV VDAKNMCGEDSTLKELRL KLELA V LSAKNLLREVEES
Sbjct: 61  KQVEIVDEEEDWLPPPPKVLVDAKNMCGEDSTLKELRLKKLELALVALSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDS+KEELKQFR+FMDDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSEKEELKQFRLFMDDKFERLFKM 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YAEKRKIDPKSLVFIFDGDKVGPDDTP+GLGMEDDDMIDVNIRPS
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPIGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of CmaCh04G014830 vs. NCBI nr
Match: KAG6601268.1 (hypothetical protein SDJN03_06501, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421.0 bits (1081), Expect = 6.4e-114
Identity = 213/225 (94.67%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MADYAEEFEPLF+YSRV PRSVDCLD+EDSDACMSPEPFSKRSRILNPAVTSLVDGN K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGNRKD 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRL+KLELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLIKLELASVALSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFR+FMDDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLFMDDKFERLFKM 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YAEKRKIDPKSLVFIFDGDKVGPDD+P+GLGMEDDDMID  IRPS
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDSPIGLGMEDDDMIDAIIRPS 225

[Close]

BLAST of CmaCh04G014830 vs. NCBI nr
Match: KAG7032057.1 (hypothetical protein SDJN02_06100 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 419.5 bits (1077), Expect = 1.9e-113
Identity = 212/225 (94.22%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MADYAEEFEPLF+YSRV PRSVDCLD+EDSDACMSPEPFSKRSRILNPAV SLVDGN K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVASLVDGNRKD 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRL+KLELASV LSAKNLLRE+EES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLIKLELASVALSAKNLLREMEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFR+FMDDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLFMDDKFERLFKM 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YAEKRKIDPKSLVFIFDGDKVGPDD+P+GLGMEDDDMIDV IRPS
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDSPIGLGMEDDDMIDVIIRPS 225

[Close]

BLAST of CmaCh04G014830 vs. NCBI nr
Match: XP_022957159.1 (uncharacterized protein LOC111458628 [Cucurbita moschata])

HSP 1 Score: 419.1 bits (1076), Expect = 2.4e-113
Identity = 214/225 (95.11%), Postives = 218/225 (96.89%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           MADYAEEFEPLF+YSRV PRSVDCLD+EDSDACMSPEPFSKRSRILNPAVTSLVDG  K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGIRKD 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVALSAKNLLREVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180
           AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFR+FMDDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLFMDDKFERLFKM 180

Query: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 226
           YAEKRKIDPKSLVFIFDGDKV PDDTP GLGMEDDDMIDVNIR S
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVSPDDTPTGLGMEDDDMIDVNIRSS 225

[Close]

BLAST of CmaCh04G014830 vs. TAIR 10
Match: AT1G68185.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-40
Identity = 98/224 (43.75%), Postives = 141/224 (62.95%), Query Frame = 0


Query: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60
           M    E+ EPLF+Y RV P +  C+D++D DA ++P P   ++   +  V  L D     
Sbjct: 1   MGGEGEDLEPLFDYRRVQPANFVCIDDDDDDASVTPIPKKAKT---SQTVEKLDD---DV 60

Query: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120
           K +E+   ++DWL PPPKV  D      EDST+K LR  K+EL S T +  ++++EVEES
Sbjct: 61  KVIEVTG-DDDWLLPPPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQEVEES 120

Query: 121 AKMDVGNTPQDPLEPALDDQIPI-ASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFK 180
           AK +V  +     E A   Q+P   + +RAKIVI+++D D +  K  R+F D+KFER+ K
Sbjct: 121 AKREVEESRNPSSETAA--QLPSEPTNDRAKIVITIQDKDGQ--KTLRVFADEKFERVIK 180

Query: 181 MYAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIR 224
           +Y +K K+DP++LVFIFDGDK+ P  TP  LGMED DMI+V+ +
Sbjct: 181 LYTDKAKLDPQNLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTK 213

[Close]

BLAST of CmaCh04G014830 vs. TAIR 10
Match: AT5G55160.2 (small ubiquitin-like modifier 2 )

HSP 1 Score: 45.4 bits (106), Expect = 6.8e-05
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 128 TPQDPLEPALDDQIPIASKERAKIVIS---VRDSDKEELKQFRIFMDDKFERLFKMYAEK 187
           TP++  +P     I +  K +A  V+    V D+D  E+  FRI    + ++L   Y ++
Sbjct: 4   TPEEDKKPDQGAHINLKVKGQAFFVVGTWLVIDTDGNEV-FFRIKRSTQLKKLMNAYCDR 63

Query: 188 RKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMID 220
           + +D  S+ F+FDG ++  + TP  L MED D ID
Sbjct: 64  QSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEID 97

[Close]

BLAST of CmaCh04G014830 vs. TAIR 10
Match: AT5G55170.1 (small ubiquitin-like modifier 3 )

HSP 1 Score: 44.7 bits (104), Expect = 1.2e-04
Identity = 25/81 (30.86%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 139 DQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKMYAEKRKIDPKSLVFIFDG 198
           D  PI  ++ A +++ V+  D +E+  F+       ++L  +Y ++R +   +  FIF+G
Sbjct: 6   DDKPIDQEQEAHVILKVKSQDGDEV-LFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 65

Query: 199 DKVGPDDTPVGLGMEDDDMID 220
            ++G  +TP  L MED D+ID
Sbjct: 66  ARIGGLETPDELDMEDGDVID 85

[Close]

BLAST of CmaCh04G014830 vs. TAIR 10
Match: AT4G26840.1 (small ubiquitin-like modifier 1 )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 149 AKIVISVRDSDKEELKQFRIFMDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVGPDDTPV 208
           A I + V+  D  E+  FRI    + ++L   Y +++ +D  S+ F+FDG ++  + TP 
Sbjct: 16  AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPD 75

Query: 209 GLGMEDDDMID 220
            L MED D ID
Sbjct: 76  ELDMEDGDEID 85

[Close]

BLAST of CmaCh04G014830 vs. TAIR 10
Match: AT5G55160.1 (small ubiquitin-like modifier 2 )

HSP 1 Score: 43.1 bits (100), Expect = 3.4e-04
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 149 AKIVISVRDSDKEELKQFRIFMDDKFERLFKMYAEKRKIDPKSLVFIFDGDKVGPDDTPV 208
           A I + V+  D  E+  FRI    + ++L   Y +++ +D  S+ F+FDG ++  + TP 
Sbjct: 15  AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPD 74

Query: 209 GLGMEDDDMID 220
            L MED D ID
Sbjct: 75  ELEMEDGDEID 84

The following BLAST results are available for this feature:

BLAST of CmaCh04G014830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55853	6.7e-05	41.43	Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1...	[more]

BLAST of CmaCh04G014830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEF8	7.6e-121	100.00	uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658...	[more]
A0A6J1H158	1.2e-113	95.11	uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A0A0KWH7	8.0e-94	80.89	Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 P...	[more]
A0A5A7SVU4	1.2e-89	77.78	Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BF31	1.2e-89	77.78	uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmaCh04G014830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985708.1	1.6e-120	100.00	uncharacterized protein LOC111483658 [Cucurbita maxima]	[more]
XP_023553495.1	2.2e-114	95.11	uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo]	[more]
KAG6601268.1	6.4e-114	94.67	hypothetical protein SDJN03_06501, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7032057.1	1.9e-113	94.22	hypothetical protein SDJN02_06100 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022957159.1	2.4e-113	95.11	uncharacterized protein LOC111458628 [Cucurbita moschata]	[more]

BLAST of CmaCh04G014830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68185.1	1.3e-40	43.75	Ubiquitin-like superfamily protein	[more]
AT5G55160.2	6.8e-05	32.63	small ubiquitin-like modifier 2	[more]
AT5G55170.1	1.2e-04	30.86	small ubiquitin-like modifier 3	[more]
AT4G26840.1	1.5e-04	35.21	small ubiquitin-like modifier 1	[more]
AT5G55160.1	3.4e-04	35.21	small ubiquitin-like modifier 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 122..223 e-value: 9.0E-22 score: 79.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..83
None	No IPR available	PANTHER	PTHR47813	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 1..225
None	No IPR available	CDD	cd01763	Ubl_SUMO_like	coord: 150..220 e-value: 3.12839E-24 score: 89.5616
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 151..222 e-value: 5.9E-14 score: 51.6
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 143..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G014830.1	CmaCh04G014830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding